vOTU vOTU-059732

vOTU: vOTU-059732

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059732
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00799 → vGENUS-05164 → vSUBGEN-03198 → vOTU-059732
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Longicatena → Longicatena caecimuris
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0043775
Biosample ID	N/A
Genome length (bp)	37,927 bps
CheckV completeness	92.51% (High-quality)
CDS count	59
CDS density	92.59%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Longicatena → Longicatena caecimuris	Total connections	74	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Longicatena → Longicatena caecimuris	Total connections	42	Host agreement	97.62

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0043775_1	phrog_585	94.8	8.3e-28	N/A	unknown function
UniRef90	UHGV-0043775_1	UniRef90_UPI001F52F0FC	105.0	2.89e-27	N/A	N/A
eggNOG-mapper	UHGV-0043775_1	1280692.AUJL01000009_gene2980	99.8	1.16e-25	N/A	N/A
Pfam	UHGV-0043775_1	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0043775_1	PF10711,TIGR04176,COG5045	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_2	phrog_373	134.8	6.89999e-40	anti-repressor	transcription regulation
UniRef90	UHGV-0043775_2	UniRef90_UPI000246CFB6	473.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0043775_2	1304866.K413DRAFT_3008	201.0	0	Phage regulatory protein	N/A
Pfam	UHGV-0043775_2	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-0043775_2	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0043775_2	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0043775_2	PF10552,PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043775_4	PF10922	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_5	phrog_2139	131.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043775_5	UniRef90_UPI000246CFB3	636.0	0	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0043775_5	428127.EUBDOL_01249	496.0	0	N/A	N/A
Pfam	UHGV-0043775_5	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-0043775_5	PF12705,MF_03030,TIGR04328,COG2251	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_6	phrog_155	148.6	3.36312e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043775_6	UniRef90_UPI000246CFB2	464.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0043775_6	929506.CbC4_1193	150.0	1.59047e-42	ERF superfamily	N/A
Pfam	UHGV-0043775_6	PF04404	N/A	N/A	ERF superfamily	ERF
PHROG	UHGV-0043775_7	phrog_7370	63.6	2.8e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043775_7	UniRef90_UPI000C81F1CB	95.5	1.48e-23	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0043775_7	1232449.BAHV02000016_gene1841	100.0	3.2e-26	HNH nucleases	N/A
PHROG	UHGV-0043775_8	phrog_72	53.7	0.0000000000000019	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0043775_8	428127.EUBDOL_01246	280.0	0	N/A	N/A
Pfam	UHGV-0043775_8	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0043775_8	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_10	phrog_20891	55.8	9.5e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043775_10	UniRef90_UPI000246CFAF	341.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0043775_10	1444310.JANV01000162_gene1198	57.0	0.000000216	HNH endonuclease	N/A
Pfam	UHGV-0043775_10	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0043775_11	phrog_1163	250.9	0	N/A	unknown function
UniRef90	UHGV-0043775_11	UniRef90_UPI000246CFAE	573.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0043775_11	762051.LKI_09560	249.0	0	DnaD domain protein	N/A
Pfam	UHGV-0043775_11	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0043775_11	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0043775_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0043775_11	PF09681,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043775_13	PF02768,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
KOfam	UHGV-0043775_15	K03148	83.4	2.6e-24	thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]	N/A
UniRef90	UHGV-0043775_15	UniRef90_UPI001BCD2645	412.0	0	ThiF family adenylyltransferase	N/A
eggNOG-mapper	UHGV-0043775_15	428127.EUBDOL_01242	307.0	0	ThiF family	N/A
Pfam	UHGV-0043775_15	PF00899	N/A	N/A	ThiF family	ThiF
COG	UHGV-0043775_15	COG0476	N/A	N/A	Molybdopterin or thiamine biosynthesis adenylyltransferase	N/A
structural_annotation	UHGV-0043775_15	PF00899,MF_03049,TIGR03736,COG0476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043775_17	UniRef90_A0A318KPZ6	171.0	0	E2/UBC family protein D	N/A
structural_annotation	UHGV-0043775_17	PF14460,TIGR03737	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_18	phrog_954	205.2	0	DNA methyltransferase	other
UniRef90	UHGV-0043775_18	UniRef90_A0A099I3S3	313.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0043775_18	908340.HMPREF9406_3501	256.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0043775_18	MTase_II_00074	196.2	0	Type II methyltransferase	RM
COG	UHGV-0043775_18	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0043775_18	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_20	phrog_986	88.8	5.6e-26	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043775_20	UniRef90_UPI00143D4F46	82.8	7.8e-19	N/A	N/A
eggNOG-mapper	UHGV-0043775_20	999413.HMPREF1094_04677	79.3	2.53e-18	N/A	N/A
Pfam	UHGV-0043775_20	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0043775_20	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
KOfam	UHGV-0043775_21	K03111	153.2	2.8026e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0043775_21	phrog_44	152.1	2.8026e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043775_21	UniRef90_A0A4R3TFM5	287.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0043775_21	552396.HMPREF0863_00560	229.0	0	COG COG0629 Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0043775_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0043775_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0043775_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0043775_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0043775_21	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_23	phrog_23707	58.0	1.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0043775_23	552398.HMPREF0866_01624	60.5	0.000000000512	N/A	N/A
structural_annotation	UHGV-0043775_30	PF05263,MF_00245,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_31	phrog_4392	50.6	0.000000000000032	N/A	unknown function
KOfam	UHGV-0043775_33	K07474	86.8	4.5e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0043775_33	phrog_2606	238.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0043775_33	UniRef90_UPI000246D58D	556.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0043775_33	1235800.C819_02241	169.0	0	terminase, small subunit	N/A
Pfam	UHGV-0043775_33	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0043775_33	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0043775_33	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0043775_34	K06909	65.1	1.1e-18	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0043775_34	phrog_29775	91.5	5.2e-27	N/A	unknown function
UniRef90	UHGV-0043775_34	UniRef90_UPI000E521D30	881.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0043775_34	1151292.QEW_4394	664.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0043775_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0043775_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0043775_34	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_35	phrog_533	258.3	0	portal protein	head and packaging
UniRef90	UHGV-0043775_35	UniRef90_UPI000E474B3E	894.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0043775_35	1294142.CINTURNW_1024	556.0	0	N/A	N/A
structural_annotation	UHGV-0043775_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_36	phrog_581	311.5	0	minor head protein	head and packaging
UniRef90	UHGV-0043775_36	UniRef90_A0A4R3TEM7	701.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0043775_36	552396.HMPREF0863_01630	689.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0043775_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0043775_36	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_38	phrog_419	101.0	1.6e-29	N/A	unknown function
UniRef90	UHGV-0043775_38	UniRef90_A6MAI4	153.0	0	Gp119	N/A
eggNOG-mapper	UHGV-0043775_38	388452.A6MAI4_9CAUD	153.0	0	N/A	N/A
structural_annotation	UHGV-0043775_38	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_39	phrog_2303	130.9	8e-39	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0043775_39	1304866.K413DRAFT_0806	110.0	2.17e-27	N/A	N/A
PHROG	UHGV-0043775_40	phrog_212	295.8	0	major head protein	head and packaging
UniRef90	UHGV-0043775_40	UniRef90_UPI000E47E686	578.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0043775_40	1262449.CP6013_3199	482.0	0	N/A	N/A
structural_annotation	UHGV-0043775_40	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_41	phrog_10541	48.9	0.00000000000012	N/A	unknown function
UniRef90	UHGV-0043775_41	UniRef90_A0A1M6EXN4	53.5	0.000000373	Rho termination factor, N-terminal domain	N/A
eggNOG-mapper	UHGV-0043775_41	1395587.P364_0122060	64.3	0.00000000000329	N/A	N/A
PHROG	UHGV-0043775_42	phrog_541	88.8	5.1e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0043775_42	552396.HMPREF0863_01637	223.0	0	N/A	N/A
PHROG	UHGV-0043775_43	phrog_8710	101.7	4.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0043775_43	552396.HMPREF0863_01638	139.0	3.80004e-41	N/A	N/A
structural_annotation	UHGV-0043775_43	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_44	phrog_556	76.6	2.9e-22	minor head protein	head and packaging
UniRef90	UHGV-0043775_44	UniRef90_UPI000246D598	265.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0043775_44	552396.HMPREF0863_01639	226.0	0	N/A	N/A
Pfam	UHGV-0043775_44	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-0043775_45	phrog_2595	100.2	1.6e-29	head-tail connector protein	connector
UniRef90	UHGV-0043775_45	UniRef90_UPI001D0A149F	202.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0043775_45	552396.HMPREF0863_01640	241.0	0	N/A	N/A
Pfam	UHGV-0043775_45	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0043775_45	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_46	phrog_820	120.4	1.1e-35	major tail protein	tail
UniRef90	UHGV-0043775_46	UniRef90_A0A7D6ZFT1	207.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0043775_46	552396.HMPREF0863_01641	303.0	0	domain, Protein	N/A
COG	UHGV-0043775_46	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043775_46	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_47	phrog_8300	88.9	4.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0043775_47	658659.HMPREF0983_03300	91.3	2.41e-22	N/A	N/A
structural_annotation	UHGV-0043775_47	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_48	phrog_8355	117.0	4.6e-35	N/A	unknown function
UniRef90	UHGV-0043775_48	UniRef90_A0A4R3TDU8	167.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0043775_48	552396.HMPREF0863_01643	163.0	0	N/A	N/A
PHROG	UHGV-0043775_49	phrog_1535	325.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0043775_49	UniRef90_A0A4R3TDI6	1106.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0043775_49	552396.HMPREF0863_01644	1094.0	0	phage tail tape measure protein	N/A
COG	UHGV-0043775_49	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_50	phrog_1194	62.5	6.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0043775_50	552396.HMPREF0863_01645	226.0	0	N/A	N/A
structural_annotation	UHGV-0043775_50	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_51	phrog_1401	60.9	2.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0043775_51	1262449.CP6013_3212	67.8	0.000000000000734	N/A	N/A
structural_annotation	UHGV-0043775_51	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_52	phrog_16267	128.1	5.60519e-45	N/A	unknown function
UniRef90	UHGV-0043775_52	UniRef90_U5F6T9	2253.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0043775_52	552396.HMPREF0863_01647	2253.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0043775_52	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0043775_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0043775_52	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0043775_54	phrog_199	105.1	6.6e-31	holin	lysis
UniRef90	UHGV-0043775_54	UniRef90_A0A4R3TDP9	232.0	0	Cph1 family holin	N/A
eggNOG-mapper	UHGV-0043775_54	469596.HMPREF9488_01337	174.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0043775_54	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0043775_54	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0043775_54	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0043775_54	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0043775_55	K01448	90.9	1.6e-26	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0043775_55	phrog_435	178.3	0	endolysin	lysis
UniRef90	UHGV-0043775_55	UniRef90_UPI001BD160C7	540.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0043775_55	552396.HMPREF0863_00263	468.0	0	hmm pf01520	N/A
Pfam	UHGV-0043775_55	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0043775_55	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0043775_55	PF01520,PF05036,MF_02022,MF_00562,TIGR02883,COG0860,COG3147	N/A	N/A	N/A	N/A
KOfam	UHGV-0043775_56	K07699	151.7	4.2039e-45	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-0043775_56	phrog_37855	118.3	5.4e-35	N/A	unknown function
UniRef90	UHGV-0043775_56	UniRef90_UPI000246D69D	243.0	0	sporulation initiation factor Spo0A C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0043775_56	1340434.AXVA01000005_gene4943	117.0	5.37e-31	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	N/A
Pfam	UHGV-0043775_56	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0043775_56	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-0043775_56	PF08769,TIGR02875	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043775_58	UniRef90_UPI0018A96F5E	106.0	4.27e-29	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0043775_59	908340.HMPREF9406_0254	104.0	2.5e-26	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0043775	Yes	37,927	36	93	1
UHGV-1692923	No	19,846	38	48	1
UHGV-1680433	No	17,843	38	44	1