vOTU vOTU-059742

vOTU: vOTU-059742

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059742
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01303 → vGENUS-17814 → vSUBGEN-33342 → vOTU-059742
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → KLE1615
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0076087
Biosample ID	SAMEA2580260
Genome length (bp)	41,753 bps
CheckV completeness	96.07% (High-quality)
CDS count	57
CDS density	94.26%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → KLE1615	Total connections	38	Host agreement	94.74
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → KLE1615 → KLE1615 sp900066985	Total connections	15	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0076087_1	394503.Ccel_2974	55.8	0.00000325	N/A	N/A
UniRef90	UHGV-0076087_2	UniRef90_UPI000482B8EB	81.6	0.0000000000000511	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0076087_2	1230341.MJ3_13444	73.2	0.0000000000103	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-0076087_2	PF02037	N/A	N/A	SAP domain	SAP
KOfam	UHGV-0076087_3	K22300	44.9	0.0000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0076087_3	phrog_8	42.9	0.0000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0076087_3	UniRef90_A0A416MNC0	206.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0076087_3	1235792.C808_00647	126.0	4e-35	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0076087_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0076087_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0076087_3	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_11	phrog_3584	216.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0076087_11	411470.RUMGNA_00203	227.0	0	COG NOG14934 non supervised orthologous group	N/A
UniRef90	UHGV-0076087_13	UniRef90_UPI0003F6328F	58.9	0.0000000515	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0076087_13	483218.BACPEC_01167	71.2	0.0000000000003	N/A	N/A
eggNOG-mapper	UHGV-0076087_14	483218.BACPEC_01167	88.2	1.06e-19	N/A	N/A
eggNOG-mapper	UHGV-0076087_15	1280698.AUJS01000007_gene1016	103.0	1.06e-25	N/A	N/A
PHROG	UHGV-0076087_16	phrog_4433	48.6	0.000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0076087_16	665956.HMPREF1032_03097	123.0	4.66e-33	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0076087_16	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0076087_17	phrog_8470	190.7	0	N/A	unknown function
UniRef90	UHGV-0076087_17	UniRef90_UPI001158FAD9	250.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0076087_17	411902.CLOBOL_05697	253.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0076087_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0076087_17	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_18	phrog_15077	109.1	8e-32	N/A	unknown function
UniRef90	UHGV-0076087_18	UniRef90_A0A3A6HZA9	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0076087_18	411902.CLOBOL_05696	176.0	0	N/A	N/A
structural_annotation	UHGV-0076087_18	PF11300,NF033725	N/A	N/A	N/A	N/A
KOfam	UHGV-0076087_19	K03111	130.0	3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0076087_19	phrog_44	131.5	6.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076087_19	UniRef90_A0A176U568	246.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0076087_19	742740.HMPREF9474_02547	212.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0076087_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0076087_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0076087_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0076087_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0076087_19	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_21	phrog_7566	102.9	1.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0076087_21	483218.BACPEC_01171	81.3	1.9e-18	N/A	N/A
KOfam	UHGV-0076087_22	K03469	53.7	0.0000000000000044	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0076087_22	phrog_531	42.8	0.0000000000087	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076087_22	UniRef90_A0A4R5HDS4	82.4	1.48e-17	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0076087_22	439496.RBY4I_1007	70.1	0.000000000000148	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0076087_22	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0076087_22	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0076087_22	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0076087_25	1408312.JNJS01000002_gene68	57.8	0.000000296	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
COG	UHGV-0076087_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0076087_25	PF05225,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0076087_26	K04763	128.4	8.9e-38	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0076087_26	phrog_1	102.2	8.1e-30	integrase	integration and excision
UniRef90	UHGV-0076087_26	UniRef90_A0A373PZR0	197.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0076087_26	1378168.N510_01742	191.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0076087_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0076087_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0076087_26	PF00589,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_27	phrog_5696	82.3	6.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0076087_27	665956.HMPREF1032_03099	62.0	0.000000000353	N-6 DNA Methylase	N/A
COG	UHGV-0076087_27	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
PHROG	UHGV-0076087_28	phrog_5696	72.1	8.5e-21	N/A	unknown function
UniRef90	UHGV-0076087_28	UniRef90_A0A013VF17	55.8	0.0000000407	Restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0076087_28	1245471.PCA10_p0930	69.7	0.000000000000339	N-6 DNA Methylase	N/A
COG	UHGV-0076087_28	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
eggNOG-mapper	UHGV-0076087_30	658655.HMPREF0988_00866	61.6	0.000000000119	N/A	N/A
PHROG	UHGV-0076087_31	phrog_36	60.6	3.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0076087_31	UniRef90_A0A416MN03	212.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0076087_31	1256908.HMPREF0373_00671	109.0	1.35e-28	N/A	N/A
structural_annotation	UHGV-0076087_31	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076087_32	PF04381,MF_00194,NF001460,COG2974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076087_33	UniRef90_UPI00164A4990	313.0	0	restriction endonuclease	N/A
structural_annotation	UHGV-0076087_33	PF19363,PF04471,COG1787,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_34	phrog_509	266.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-0076087_34	UniRef90_A0A3D3U9Y4	376.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0076087_34	1449050.JNLE01000003_gene3896	266.0	0	DNA packaging	N/A
Pfam	UHGV-0076087_34	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0076087_34	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0076087_34	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076087_34	NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0076087_35	K06909	221.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0076087_35	phrog_2	113.5	3e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0076087_35	UniRef90_A0A7G5MSQ6	635.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0076087_35	1235799.C818_04217	625.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0076087_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0076087_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0076087_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0076087_35	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_36	phrog_533	341.4	0	portal protein	head and packaging
UniRef90	UHGV-0076087_36	UniRef90_A0A174L8Y1	484.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0076087_36	1235799.C818_04218	487.0	0	N/A	N/A
structural_annotation	UHGV-0076087_36	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_37	phrog_581	306.8	0	minor head protein	head and packaging
UniRef90	UHGV-0076087_37	UniRef90_A0A3D3U8R6	982.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0076087_37	1235799.C818_04219	369.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0076087_37	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0076087_37	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076087_37	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_38	phrog_15041	115.0	2.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0076087_38	1304866.K413DRAFT_0808	48.9	0.00000126	N/A	N/A
structural_annotation	UHGV-0076087_38	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_39	phrog_1048	100.7	2.3e-29	N/A	unknown function
UniRef90	UHGV-0076087_39	UniRef90_A0A396NPG3	136.0	3.91e-39	N/A	N/A
eggNOG-mapper	UHGV-0076087_39	457412.RSAG_01107	134.0	4.12e-39	N/A	N/A
Pfam	UHGV-0076087_39	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0076087_39	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0076087_39	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_40	phrog_918	89.2	2.9e-26	N/A	unknown function
UniRef90	UHGV-0076087_40	UniRef90_UPI00156D5D02	151.0	0	N/A	N/A
eggNOG-mapper	UHGV-0076087_40	1256908.HMPREF0373_00480	140.0	1.10002e-42	N/A	N/A
Pfam	UHGV-0076087_40	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0076087_40	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_42	phrog_194	75.9	6.6e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0076087_42	UniRef90_UPI001319F292	189.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0076087_42	33035.JPJF01000030_gene2293	201.0	0	PFAM Phage minor structural	N/A
Pfam	UHGV-0076087_42	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
eggNOG-mapper	UHGV-0076087_43	33035.JPJF01000030_gene2294	441.0	0	N/A	N/A
structural_annotation	UHGV-0076087_43	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_44	phrog_541	82.5	4.5e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0076087_44	411902.CLOBOL_00133	69.7	0.000000000000176	N/A	N/A
PHROG	UHGV-0076087_45	phrog_3366	66.4	4.3e-19	N/A	unknown function
structural_annotation	UHGV-0076087_45	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_46	phrog_556	61.1	1.6e-17	minor head protein	head and packaging
UniRef90	UHGV-0076087_46	UniRef90_UPI001C3B04D8	137.0	5.3e-39	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0076087_46	411461.DORFOR_01170	110.0	7.31e-29	Minor capsid protein	N/A
Pfam	UHGV-0076087_46	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0076087_46	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_47	phrog_3266	84.6	1.1e-24	tail completion	connector
eggNOG-mapper	UHGV-0076087_47	663278.Ethha_0098	68.9	0.000000000000757	N/A	N/A
structural_annotation	UHGV-0076087_47	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_48	phrog_820	76.6	2.8e-22	major tail protein	tail
UniRef90	UHGV-0076087_48	UniRef90_A0A174M1L1	232.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0076087_48	411461.DORFOR_01172	219.0	0	N/A	N/A
structural_annotation	UHGV-0076087_48	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_50	phrog_706	158.5	0	N/A	unknown function
UniRef90	UHGV-0076087_50	UniRef90_A0A1M6B1I0	148.0	1.57001e-41	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0076087_50	573061.Clocel_3534	131.0	9.17e-36	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0076087_50	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0076087_50	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_51	phrog_1533	291.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0076087_51	411483.FAEPRAA2165_01911	377.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0076087_51	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0076087_51	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0076087_51	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0076087_51	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076087_52	UniRef90_A0A416L6F4	104.0	5.82e-24	MtfA protein	N/A
eggNOG-mapper	UHGV-0076087_52	1235799.C818_04232	105.0	3.94e-25	phage tail	N/A
COG	UHGV-0076087_52	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0076087_52	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_53	phrog_3558	335.9	0	tail protein	tail
UniRef90	UHGV-0076087_53	UniRef90_A8SKQ2	249.0	0	Phage minor structural protein, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0076087_53	411465.PEPMIC_00746	249.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0076087_53	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0076087_53	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0076087_53	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0076087_53	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0076087_53	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076087_54	UniRef90_A0A3D3UB27	1434.0	0	BppU_N domain-containing protein	N/A
Pfam	UHGV-0076087_54	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0076087_54	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0076087_56	phrog_199	66.7	3.2e-19	holin	lysis
UniRef90	UHGV-0076087_56	UniRef90_A0A3D3UA08	284.0	0	Holin	N/A
eggNOG-mapper	UHGV-0076087_56	411460.RUMTOR_02100	215.0	0	N/A	N/A
Pfam	UHGV-0076087_56	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0076087_56	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0076087_56	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0076087_57	K01448	48.1	0.00000000000017	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0076087_57	phrog_435	70.7	2.4e-20	endolysin	lysis
UniRef90	UHGV-0076087_57	UniRef90_A0A416MN83	453.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0076087_57	1408437.JNJN01000039_gene391	113.0	5.04e-26	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0076087_57	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0076087_57	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0076087_57	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0076087_57	PF01520,TIGR02883,COG0860	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0076087	Yes	41,753	42	96	1
UHGV-0189655	No	41,663	42	96	1
UHGV-2193717	No	41,663	42	96	1
UHGV-1578458	No	11,927	43	33	1