vOTU vOTU-059771

vOTU: vOTU-059771

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059771
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00043 → vGENUS-05110 → vSUBGEN-09957 → vOTU-059771
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1529056
Biosample ID	SAMEA40228168
Genome length (bp)	40,426 bps
CheckV completeness	99.90% (High-quality)
CDS count	56
CDS density	89.62%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	29	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1529056_1	K06400	302.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1529056_1	phrog_95	329.8	0	integrase	integration and excision
UniRef90	UHGV-1529056_1	UniRef90_A0A415FHQ5	754.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1529056_1	33035.JPJF01000109_gene439	645.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1529056_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1529056_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1529056_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1529056_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1529056_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_2	phrog_27136	163.4	0	N/A	unknown function
UniRef90	UHGV-1529056_2	UniRef90_UPI001CED3949	354.0	0	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1529056_2	1260356.D920_00189	73.6	0.000000000000636	Short C-terminal domain	N/A
KOfam	UHGV-1529056_3	K22300	43.2	0.0000000000078	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1529056_3	UniRef90_UPI0009316260	215.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1529056_3	1235793.C809_03587	73.6	0.00000000000000626	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1529056_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1529056_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1529056_3	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1529056_5	PF09202,MF_01819,NF008565,COG3432	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_7	phrog_585	99.1	4.1e-29	N/A	unknown function
UniRef90	UHGV-1529056_7	UniRef90_UPI001654CF6A	127.0	9.17e-36	N/A	N/A
eggNOG-mapper	UHGV-1529056_7	1235798.C817_04760	132.0	1.67e-38	N/A	N/A
Pfam	UHGV-1529056_7	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1529056_7	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_12	phrog_3584	142.4	3.20057e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529056_12	UniRef90_UPI001D0EB55A	306.0	0	helitron helicase-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1529056_12	483218.BACPEC_01173	185.0	0	N/A	N/A
structural_annotation	UHGV-1529056_12	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-1529056_13	UniRef90_A0A1C5RDL1	251.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1529056_13	411461.DORFOR_01140	110.0	1.22e-28	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-1529056_13	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1529056_13	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-1529056_15	K03496	211.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1529056_15	phrog_164	161.1	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529056_15	UniRef90_A0A1C5REE7	428.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1529056_15	97139.C824_00725	274.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1529056_15	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1529056_15	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1529056_15	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1529056_16	K03497	68.7	1.3e-19	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1529056_16	phrog_15077	169.6	0	N/A	unknown function
UniRef90	UHGV-1529056_16	UniRef90_UPI00189D1017	764.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1529056_16	1235792.C808_00610	178.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1529056_16	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1529056_16	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1529056_16	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-1529056_19	UniRef90_UPI001E52B02C	51.2	0.000000493	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1529056_19	500632.CLONEX_03572	50.4	0.000000182	N/A	N/A
structural_annotation	UHGV-1529056_19	PF01381,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_20	phrog_4601	40.3	0.000000000042	N/A	unknown function
PHROG	UHGV-1529056_22	phrog_19011	49.2	0.000000000000072	N/A	unknown function
PHROG	UHGV-1529056_23	phrog_19011	53.5	0.0000000000000033	N/A	unknown function
PHROG	UHGV-1529056_25	phrog_36	49.7	0.000000000000077	transcriptional regulator	transcription regulation
UniRef90	UHGV-1529056_25	UniRef90_UPI000931D7F9	209.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-1529056_25	411459.RUMOBE_00943	212.0	0	N/A	N/A
structural_annotation	UHGV-1529056_25	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-1529056_26	K07474	157.7	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1529056_26	phrog_51	144.7	4.69435e-43	terminase small subunit	head and packaging
UniRef90	UHGV-1529056_26	UniRef90_UPI000E43AB8F	278.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1529056_26	742740.HMPREF9474_03499	209.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-1529056_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1529056_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1529056_26	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1529056_27	K06909	88.4	1.1e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1529056_27	phrog_2	70.9	3e-20	terminase large subunit	head and packaging
UniRef90	UHGV-1529056_27	UniRef90_UPI0011DDB413	858.0	0	terminase	N/A
eggNOG-mapper	UHGV-1529056_27	742740.HMPREF9474_03500	660.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1529056_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1529056_27	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_28	phrog_533	270.2	0	portal protein	head and packaging
UniRef90	UHGV-1529056_28	UniRef90_UPI001C0F908C	828.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-1529056_28	1117108.PAALTS15_13582	514.0	0	N/A	N/A
structural_annotation	UHGV-1529056_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_29	phrog_25639	117.1	4.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-1529056_29	742740.HMPREF9474_03502	81.6	1.32e-19	N/A	N/A
PHROG	UHGV-1529056_30	phrog_581	229.7	0	minor head protein	head and packaging
UniRef90	UHGV-1529056_30	UniRef90_UPI0009303339	816.0	0	putative zinc-binding metallopeptidase	N/A
eggNOG-mapper	UHGV-1529056_30	33035.JPJF01000093_gene2255	492.0	0	N/A	N/A
Pfam	UHGV-1529056_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1529056_30	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-1529056_30	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1529056_30	PF06152,PF21814	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1529056_31	PF02699,MF_00369,TIGR00739,COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_34	phrog_194	161.9	0	head scaffolding protein	head and packaging
UniRef90	UHGV-1529056_34	UniRef90_UPI001D02A5C9	258.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1529056_34	1262449.CP6013_3198	169.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1529056_34	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1529056_34	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_35	phrog_212	291.7	0	major head protein	head and packaging
UniRef90	UHGV-1529056_35	UniRef90_A0A416Q289	583.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1529056_35	1294142.CINTURNW_1029	498.0	0	N/A	N/A
Pfam	UHGV-1529056_35	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1529056_35	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_36	phrog_15682	69.7	3.5e-20	N/A	unknown function
UniRef90	UHGV-1529056_36	UniRef90_J5WK97	69.7	0.0000000000000567	Rho termination factor, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1529056_36	469618.FVAG_01311	65.1	0.00000000000124	N/A	N/A
PHROG	UHGV-1529056_37	phrog_541	95.9	3.2e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1529056_37	1298920.KI911353_gene4848	199.0	0	N/A	N/A
PHROG	UHGV-1529056_38	phrog_8710	150.5	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-1529056_38	742740.HMPREF9474_03508	152.0	0	N/A	N/A
structural_annotation	UHGV-1529056_38	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_39	phrog_556	46.9	0.00000000000045	minor head protein	head and packaging
eggNOG-mapper	UHGV-1529056_39	742740.HMPREF9474_03509	167.0	0	N/A	N/A
PHROG	UHGV-1529056_40	phrog_2595	85.7	4.6e-25	head-tail connector protein	connector
UniRef90	UHGV-1529056_40	UniRef90_UPI001C0EB705	223.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1529056_40	483218.BACPEC_01150	119.0	5.93e-33	N/A	N/A
Pfam	UHGV-1529056_40	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1529056_40	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_41	phrog_820	107.4	9.4e-32	major tail protein	tail
eggNOG-mapper	UHGV-1529056_41	33035.JPJF01000093_gene2246	192.0	0	N/A	N/A
structural_annotation	UHGV-1529056_41	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_42	phrog_8300	77.7	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1529056_42	33035.JPJF01000093_gene2245	59.7	0.00000000026	N/A	N/A
structural_annotation	UHGV-1529056_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_43	phrog_8355	89.9	1.2e-26	N/A	unknown function
UniRef90	UHGV-1529056_43	UniRef90_UPI001F2CFAB2	134.0	2.5e-39	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-1529056_43	33035.JPJF01000093_gene2244	86.3	3.38e-21	N/A	N/A
structural_annotation	UHGV-1529056_43	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_44	phrog_1535	495.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1529056_44	UniRef90_A0A1C5RGR7	1263.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1529056_44	33035.JPJF01000093_gene2243	789.0	0	phage tail tape measure protein	N/A
COG	UHGV-1529056_44	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1529056_44	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_45	phrog_1194	60.0	3.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-1529056_45	33035.JPJF01000093_gene2242	156.0	0	N/A	N/A
structural_annotation	UHGV-1529056_45	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_46	phrog_6616	663.3	0	tail protein	tail
UniRef90	UHGV-1529056_46	UniRef90_R5QUN9	1043.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1529056_46	1121866.AUGK01000003_gene1439	219.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1529056_46	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1529056_46	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1529056_46	PF05113,PF18957,PF16407,NF033848,NF011782,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_47	phrog_11105	53.2	0.0000000000000045	N/A	unknown function
PHROG	UHGV-1529056_48	phrog_16164	274.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1529056_48	457412.RSAG_01113	90.9	3.34e-19	N/A	N/A
structural_annotation	UHGV-1529056_48	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_49	phrog_355	57.0	3.5e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529056_49	UniRef90_UPI0018A09237	161.0	0	N/A	N/A
eggNOG-mapper	UHGV-1529056_49	397290.C810_05229	157.0	0	N/A	N/A
Pfam	UHGV-1529056_49	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1529056_49	PF14359	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1529056_50	457412.RSAG_01112	71.6	0.000000000703	N/A	N/A
structural_annotation	UHGV-1529056_50	PF20942	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_52	phrog_28526	129.2	7.9e-39	N/A	unknown function
UniRef90	UHGV-1529056_52	UniRef90_A0A3D4R9W1	87.8	5.7e-22	Antitoxin	N/A
eggNOG-mapper	UHGV-1529056_52	411462.DORLON_00769	90.9	5.74e-24	N/A	N/A
PHROG	UHGV-1529056_53	phrog_199	76.9	2.2e-22	holin	lysis
UniRef90	UHGV-1529056_53	UniRef90_UPI00033C89C4	277.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1529056_53	411462.DORLON_00766	222.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1529056_53	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1529056_53	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1529056_53	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1529056_53	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1529056_54	K07273	190.7	0	acm; lysozyme	N/A
PHROG	UHGV-1529056_54	phrog_6745	190.9	0	endolysin	lysis
UniRef90	UHGV-1529056_54	UniRef90_A0A1C5L8B5	769.0	0	Lysozyme M1	N/A
eggNOG-mapper	UHGV-1529056_54	1121115.AXVN01000006_gene2170	441.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-1529056_54	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1529056_54	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1529056_54	PF01183,PF18342,PF14603,NF040678,TIGR04303,COG3757,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-1529056_56	phrog_23452	234.2	0	N/A	unknown function
UniRef90	UHGV-1529056_56	UniRef90_A0A6N9LEQ0	407.0	0	Peptidoglycan-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-1529056_56	411459.RUMOBE_02836	407.0	0	N/A	N/A
Pfam	UHGV-1529056_56	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1529056_56	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1529056	Yes	40,426	44	100	1