vOTU vOTU-059784

vOTU: vOTU-059784

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059784
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00309 → vSUBGEN-03893 → vOTU-059784
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0066092
Biosample ID	SAMEA2467077
Genome length (bp)	36,056 bps
CheckV completeness	99.90% (High-quality)
CDS count	55
CDS density	92.54%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter	Total connections	272	Host agreement	87.87
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	48	Host agreement	81.25

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0066092_1	K06400	108.3	9.6e-32	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0066092_1	phrog_95	103.7	1.9e-30	integrase	integration and excision
UniRef90	UHGV-0066092_1	UniRef90_A0A6L9H5B9	182.0	0	Recombinase family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0066092_1	411460.RUMTOR_02053	188.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0066092_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0066092_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-0066092_2	K10716	132.1	4.8e-39	kch, trkA, mthK, pch; voltage-gated potassium channel	N/A
PHROG	UHGV-0066092_2	phrog_7872	203.9	0	N/A	unknown function
UniRef90	UHGV-0066092_2	UniRef90_A0A373MPY2	438.0	0	Ion channel	N/A
eggNOG-mapper	UHGV-0066092_2	411459.RUMOBE_00964	285.0	0	Ion channel	N/A
Pfam	UHGV-0066092_2	PF07885	N/A	N/A	Ion channel	Ion_trans_2
COG	UHGV-0066092_2	COG1226	N/A	N/A	Voltage-gated potassium channel Kch	N/A
structural_annotation	UHGV-0066092_2	PF07885,NF040645	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_3	phrog_38135	60.4	2.7e-17	N/A	unknown function
UniRef90	UHGV-0066092_3	UniRef90_UPI001F3985DB	578.0	0	N/A	N/A
eggNOG-mapper	UHGV-0066092_3	1280673.AUJJ01000019_gene1177	77.0	0.000000000000373	Transcriptional regulator	N/A
Pfam	UHGV-0066092_3	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0066092_3	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-0066092_3	PF14020	N/A	N/A	N/A	N/A
KOfam	UHGV-0066092_5	K18830	68.5	1.1e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0066092_5	phrog_4	51.6	0.000000000000022	transcriptional repressor	transcription regulation
UniRef90	UHGV-0066092_5	UniRef90_A0A1Q6K9L5	232.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0066092_5	1280698.AUJS01000007_gene1002	154.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0066092_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0066092_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0066092_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_11	phrog_20330	82.5	4.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0066092_11	565664.EFXG_02669	62.4	0.000000000111	N/A	N/A
PHROG	UHGV-0066092_13	phrog_4392	47.0	0.00000000000034	N/A	unknown function
UniRef90	UHGV-0066092_13	UniRef90_UPI000E489044	169.0	0	membrane lipoprotein lipid attachment site-containing protein	N/A
PHROG	UHGV-0066092_19	phrog_3584	153.0	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0066092_19	665950.HMPREF1025_02552	313.0	0	N/A	N/A
structural_annotation	UHGV-0066092_19	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0066092_20	K03469	51.8	0.000000000000017	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0066092_20	phrog_531	61.5	1.6e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0066092_20	UniRef90_A0A844KCI1	291.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0066092_20	665950.HMPREF1025_02551	151.0	4.2039e-45	RNase H	N/A
Pfam	UHGV-0066092_20	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0066092_20	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0066092_20	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0066092_21	1280698.AUJS01000007_gene1016	220.0	0	N/A	N/A
PHROG	UHGV-0066092_22	phrog_4433	68.3	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0066092_22	1280698.AUJS01000007_gene1017	214.0	0	N/A	N/A
structural_annotation	UHGV-0066092_22	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_23	phrog_8470	230.8	0	N/A	unknown function
UniRef90	UHGV-0066092_23	UniRef90_UPI001C01E393	587.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0066092_23	1280698.AUJS01000007_gene1018	857.0	0	N/A	N/A
Pfam	UHGV-0066092_23	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0066092_23	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_24	phrog_15077	94.9	1.6e-27	N/A	unknown function
UniRef90	UHGV-0066092_24	UniRef90_A0A3A6HZA9	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-0066092_24	1280698.AUJS01000007_gene1019	377.0	0	N/A	N/A
structural_annotation	UHGV-0066092_24	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_25	phrog_7566	116.2	9.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0066092_25	665950.HMPREF1025_02547	165.0	0	N/A	N/A
PHROG	UHGV-0066092_31	phrog_36	91.3	1.2e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-0066092_31	UniRef90_A0A373STV4	283.0	0	N/A	N/A
eggNOG-mapper	UHGV-0066092_31	411461.DORFOR_00754	159.0	0	sigma factor activity	N/A
Pfam	UHGV-0066092_31	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0066092_31	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0066092_31	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0066092_33	913865.DOT_2911	69.3	0.000000000000768	N/A	N/A
structural_annotation	UHGV-0066092_34	PF14524,NF041178	N/A	N/A	N/A	N/A
KOfam	UHGV-0066092_35	K07451	49.3	0.000000000000094	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0066092_35	phrog_119	82.9	4.1e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0066092_35	UniRef90_UPI00156F1D4A	202.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0066092_35	1232452.BAIB02000007_gene1631	93.6	2.51e-23	HNH nucleases	N/A
Pfam	UHGV-0066092_35	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0066092_35	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0066092_36	phrog_5110	102.0	3.2e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0066092_36	UniRef90_A0A1C5LZF0	102.0	8.52e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0066092_36	1211817.CCAT010000008_gene938	83.2	1.26e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-0066092_36	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0066092_36	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066092_36	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_37	phrog_9	257.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0066092_37	UniRef90_D4M588	1135.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0066092_37	1232452.BAIB02000007_gene1629	535.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0066092_37	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0066092_37	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0066092_37	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0066092_37	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_38	phrog_12	64.8	5.9e-19	portal protein	head and packaging
UniRef90	UHGV-0066092_38	UniRef90_UPI00156D5DC9	589.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0066092_38	1232452.BAIB02000007_gene1627	278.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0066092_38	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0066092_38	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0066092_38	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0066092_39	K01358	113.8	2e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0066092_39	phrog_94	178.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0066092_39	UniRef90_D4M590	504.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0066092_39	1235792.C808_00085	209.0	0	Clp protease	N/A
Pfam	UHGV-0066092_39	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0066092_39	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0066092_39	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_40	phrog_10	89.7	2.7e-26	major head protein	head and packaging
UniRef90	UHGV-0066092_40	UniRef90_D4M591	731.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0066092_40	1232452.BAIB02000007_gene1625	472.0	0	Phage capsid family	N/A
Pfam	UHGV-0066092_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0066092_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0066092_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0066092_40	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_41	phrog_749	40.5	0.000000000046	N/A	unknown function
UniRef90	UHGV-0066092_42	UniRef90_D4M593	245.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
structural_annotation	UHGV-0066092_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066092_43	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_44	phrog_5	47.8	0.00000000000033	tail completion or Neck1 protein	connector
UniRef90	UHGV-0066092_44	UniRef90_D4M595	245.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0066092_44	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0066092_44	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_45	phrog_88	100.6	1.6e-29	major tail protein	tail
UniRef90	UHGV-0066092_45	UniRef90_D4M596	381.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0066092_45	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0066092_45	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0066092_45	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066092_45	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0066092_47	K19326	48.8	0.000000000000004	SYNE1; nesprin-1	N/A
PHROG	UHGV-0066092_47	phrog_1533	460.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0066092_47	UniRef90_A0A374E9U4	1168.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0066092_47	397288.C806_00771	556.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0066092_47	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0066092_47	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0066092_47	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0066092_48	phrog_33	70.5	3.5e-20	distal tail protein Dit	tail
UniRef90	UHGV-0066092_48	UniRef90_D4M599	469.0	0	Phage putative tail component, N-terminal domain	N/A
eggNOG-mapper	UHGV-0066092_48	1235798.C817_02569	208.0	0	tail component	N/A
COG	UHGV-0066092_48	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0066092_48	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_49	phrog_13289	424.8	0	tail protein	tail
UniRef90	UHGV-0066092_49	UniRef90_A0A1Q6KA70	1167.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0066092_49	1235798.C817_02568	479.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0066092_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0066092_49	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0066092_49	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0066092_49	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0066092_50	phrog_14030	131.8	3.4e-39	N/A	unknown function
UniRef90	UHGV-0066092_50	UniRef90_A0A1Q6K9M8	639.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0066092_50	33035.JPJF01000093_gene2240	318.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0066092_50	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0066092_50	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0066092_50	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0066092_50	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0066092_51	K10804	53.6	0.0000000000000025	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
Pfam	UHGV-0066092_51	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-0066092_52	phrog_11541	117.4	1.2e-34	N/A	unknown function
UniRef90	UHGV-0066092_52	UniRef90_UPI001E3B00C2	185.0	0	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-0066092_52	243265.plu2328	90.1	6.18e-18	lipolytic protein G-D-S-L family	N/A
Pfam	UHGV-0066092_52	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0066092_52	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0066092_55	phrog_1863	60.5	4.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0066092_55	1226322.HMPREF1545_04027	64.3	0.00000000000142	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0066092	Yes	36,056	41	100	1
UHGV-0298640	No	18,115	42	51	1