vOTU vOTU-059825

vOTU: vOTU-059825

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059825
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → UBA1234 → UBA1234 sp900765095
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-02769 → vGENUS-11493 → vSUBGEN-16362 → vOTU-059825
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → UBA1234 → UBA1234 sp900753135
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0189147
Biosample ID	SAMN00715252
Genome length (bp)	35,370 bps
CheckV completeness	95.18% (High-quality)
CDS count	46
CDS density	95.17%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → UBA1234 → UBA1234 sp900753135	Total connections	21	Host agreement	71.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → UBA1234 → UBA1234 sp900765095	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0189147_1	K14059	230.5	0	int; integrase	N/A
PHROG	UHGV-0189147_1	phrog_1	203.4	0	integrase	integration and excision
UniRef90	UHGV-0189147_1	UniRef90_R5XPH3	261.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0189147_1	1161902.HMPREF0378_0144	211.0	0	DNA integration	N/A
Pfam	UHGV-0189147_1	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0189147_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0189147_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0189147_1	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0189147_2	K07341	98.8	1.1e-28	doc; death on curing protein	N/A
PHROG	UHGV-0189147_2	phrog_577	60.2	2.8e-17	Doc-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0189147_2	UniRef90_A0A417VUX7	193.0	0	Type II toxin-antitoxin system death-on-curing family toxin	N/A
eggNOG-mapper	UHGV-0189147_2	338966.Ppro_0009	176.0	0	Fic/DOC family	N/A
Pfam	UHGV-0189147_2	PF02661	N/A	N/A	Fic/DOC family	Fic
NCBIFam	UHGV-0189147_2	TIGR01550.1	N/A	N/A	type II toxin-antitoxin system death-on-curing family toxin	N/A
COG	UHGV-0189147_2	COG3654	N/A	N/A	Prophage maintenance system killer protein	N/A
structural_annotation	UHGV-0189147_2	TIGR01550,COG3654	N/A	N/A	N/A	N/A
UniRef90	UHGV-0189147_3	UniRef90_A0A662A8X2	397.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0189147_3	338966.Ppro_0008	364.0	0	bacterial-type flagellum assembly	N/A
COG	UHGV-0189147_3	COG1256	N/A	N/A	Flagellar hook-associated protein FlgK	N/A
structural_annotation	UHGV-0189147_3	PF10543,NF033622,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-0189147_6	K01356	108.8	8.6e-32	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0189147_6	phrog_4	124.7	8.8e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-0189147_6	UniRef90_B6FWU0	151.0	1.37047e-42	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-0189147_6	500633.CLOHIR_00339	151.0	2.29813e-43	Peptidase S24-like	N/A
Pfam	UHGV-0189147_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0189147_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0189147_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0189147_6	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0189147_7	UniRef90_A0A096DPD8	50.8	0.000000822	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0189147_7	511437.Lbuc_1451	50.1	0.000000259	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0189147_7	retron_type_VI_hth_cluster2_1	40.8	0.000000000068	N/A	Retron
Pfam	UHGV-0189147_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0189147_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0189147_8	UniRef90_UPI001C9138F3	51.6	0.00000121	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0189147_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0189147_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0189147_12	phrog_674	154.0	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0189147_12	UniRef90_A0A7X9AE52	238.0	0	N/A	N/A
eggNOG-mapper	UHGV-0189147_12	665956.HMPREF1032_03103	191.0	0	N/A	N/A
Pfam	UHGV-0189147_12	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0189147_12	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_13	phrog_59	136.0	1.4e-40	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189147_13	UniRef90_A0A3B8SWR8	133.0	4.29e-36	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0189147_13	357276.EL88_11520	112.0	4.45e-29	HNH endonuclease domain protein	N/A
PADLOC	UHGV-0189147_13	HEase_00016	94.1	3e-27	homing endonuclease	RM
Pfam	UHGV-0189147_13	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0189147_13	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0189147_13	PF07463,PF07453	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_14	phrog_2760	189.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189147_14	UniRef90_R7FH02	387.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0189147_14	1031288.AXAA01000044_gene1973	182.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-0189147_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0189147_14	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0189147_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0189147_14	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_15	phrog_392	139.8	2.20004e-41	metal-dependent hydrolase	other
UniRef90	UHGV-0189147_15	UniRef90_R5PYB3	399.0	0	Metallo-beta-lactamase domain protein	N/A
eggNOG-mapper	UHGV-0189147_15	665956.HMPREF1032_03101	200.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0189147_15	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0189147_15	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0189147_15	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_16	phrog_72	57.9	1.9e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189147_16	UniRef90_A0A8D9PDS2	137.0	4.55e-38	NinB protein	N/A
eggNOG-mapper	UHGV-0189147_16	508419.F8J186_9CAUD	139.0	1.9e-39	N/A	N/A
structural_annotation	UHGV-0189147_16	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_17	phrog_8048	40.1	0.00000000005	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0189147_17	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0189147_19	K03111	131.0	1.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0189147_19	phrog_44	138.2	4.90006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189147_19	UniRef90_R5PVH7	153.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0189147_19	398512.JQKC01000002_gene1869	137.0	9.5e-40	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0189147_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0189147_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0189147_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0189147_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0189147_19	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0189147_20	K02086	65.9	6.5e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-0189147_20	phrog_186	89.3	4.9e-26	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189147_20	UniRef90_R6N6L5	115.0	6e-29	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0189147_20	1158294.JOMI01000009_gene1122	76.6	0.0000000000000428	N/A	N/A
Pfam	UHGV-0189147_20	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0189147_20	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0189147_20	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0189147_20	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_21	phrog_4973	53.0	0.0000000000000054	N/A	unknown function
UniRef90	UHGV-0189147_21	UniRef90_A0A843HM15	54.3	0.0000000436	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0189147_21	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0189147_21	PF14090,NF040939	N/A	N/A	N/A	N/A
KOfam	UHGV-0189147_23	K01160	42.6	0.000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0189147_23	phrog_1682	85.1	9.3e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189147_23	UniRef90_R7FGZ0	171.0	0	Gp63	N/A
eggNOG-mapper	UHGV-0189147_23	428125.CLOLEP_01819	96.7	3.26e-24	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0189147_23	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0189147_23	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_24	phrog_7839	128.4	3.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-0189147_24	226185.EF_2126	108.0	5.41e-29	N/A	N/A
KOfam	UHGV-0189147_27	K14415	337.7	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-0189147_27	phrog_1075	426.8	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189147_27	UniRef90_A0A843GTF7	582.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-0189147_27	1410653.JHVC01000007_gene540	506.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-0189147_27	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-0189147_27	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-0189147_27	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_29	phrog_36	64.1	2.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0189147_29	UniRef90_UPI001D08678F	54.7	0.00000101	N/A	N/A
eggNOG-mapper	UHGV-0189147_29	903814.ELI_1292	60.8	0.000000000683	N/A	N/A
structural_annotation	UHGV-0189147_29	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_30	phrog_2412	69.4	5.5e-20	N/A	unknown function
UniRef90	UHGV-0189147_30	UniRef90_R5AAQ5	63.2	0.000000000354	N/A	N/A
eggNOG-mapper	UHGV-0189147_30	1203554.HMPREF1476_00247	58.9	0.0000000018	N/A	N/A
KOfam	UHGV-0189147_31	K21523	50.1	2.5e-24	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0189147_31	phrog_2	81.7	1.3e-23	terminase large subunit	head and packaging
UniRef90	UHGV-0189147_31	UniRef90_A0A0M2NP28	539.0	0	N/A	N/A
eggNOG-mapper	UHGV-0189147_31	693746.OBV_23980	460.0	0	phage Terminase large subunit	N/A
COG	UHGV-0189147_31	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0189147_31	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_33	phrog_156	166.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0189147_33	693746.OBV_01670	279.0	0	N/A	N/A
structural_annotation	UHGV-0189147_33	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0189147_36	phrog_422	179.7	0	major head protein	head and packaging
UniRef90	UHGV-0189147_36	UniRef90_UPI001E4754F4	259.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0189147_36	755731.Clo1100_2434	263.0	0	N/A	N/A
structural_annotation	UHGV-0189147_36	PF19821,MF_04119,TIGR04387,COG1659	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0189147_37	693746.OBV_01730	57.4	0.000000015	N/A	N/A
structural_annotation	UHGV-0189147_37	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-0189147_38	UniRef90_A0A4D7ASB8	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-0189147_38	755731.Clo1100_2431	370.0	0	N/A	N/A
structural_annotation	UHGV-0189147_38	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0189147_40	755731.Clo1100_2422	97.1	9.27e-19	N/A	N/A
PHROG	UHGV-0189147_41	phrog_13543	103.3	1.4e-30	N/A	unknown function
UniRef90	UHGV-0189147_41	UniRef90_A0A7X1I7W3	285.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0189147_41	1131462.DCF50_p1798	219.0	0	N/A	N/A
KOfam	UHGV-0189147_43	K16617	65.4	5.2e-19	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-0189147_43	phrog_5073	82.4	4.3e-24	tail fiber protein	tail
eggNOG-mapper	UHGV-0189147_43	1136534.J9PUL9_9CAUD	77.4	0.000000000000245	N/A	N/A
Pfam	UHGV-0189147_43	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0189147_45	phrog_18593	52.3	0.0000000000000073	N/A	unknown function
UniRef90	UHGV-0189147_45	UniRef90_A0A1C6ALA8	128.0	2.63e-34	Carbohydrate binding domain	N/A
eggNOG-mapper	UHGV-0189147_45	552398.HMPREF0866_03095	122.0	5.87e-32	N/A	N/A
Pfam	UHGV-0189147_45	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0189147	Yes	35,370	31	95	1