vOTU vOTU-059853

vOTU: vOTU-059853

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059853
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00033 → vGENUS-00350 → vSUBGEN-12883 → vOTU-059853
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1982132
Biosample ID	SAMN03922515
Genome length (bp)	35,553 bps
CheckV completeness	99.90% (High-quality)
CDS count	48
CDS density	91.96%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	60	Host agreement	88.33
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium sp900539945	Total connections	50	Host agreement	86

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1982132_1	K01681	75.8	3.5e-22	ACO, acnA; aconitate hydratase [EC:4.2.1.3]	N/A
PHROG	UHGV-1982132_1	phrog_17467	291.2	0	N/A	unknown function
UniRef90	UHGV-1982132_1	UniRef90_D4K5R8	377.0	0	Aconitase A	N/A
eggNOG-mapper	UHGV-1982132_1	748224.HMPREF9436_00126	379.0	0	aconitate hydratase	N/A
Pfam	UHGV-1982132_1	PF00330	N/A	N/A	Aconitase family (aconitate hydratase)	Aconitase
COG	UHGV-1982132_1	COG1048	N/A	N/A	Aconitase A	N/A
KOfam	UHGV-1982132_2	K14059	161.9	0	int; integrase	N/A
PHROG	UHGV-1982132_2	phrog_1	146.9	1.79366e-43	integrase	integration and excision
UniRef90	UHGV-1982132_2	UniRef90_A0A316RZQ6	538.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1982132_2	693746.OBV_25530	278.0	0	Phage integrase family	N/A
Pfam	UHGV-1982132_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1982132_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1982132_2	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1982132_3	748224.HMPREF9436_01443	590.0	0	vancomycin resistance protein	N/A
COG	UHGV-1982132_3	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-1982132_5	K22300	45.8	0.0000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1982132_5	phrog_2967	46.6	0.00000000000049	transcriptional regulator	transcription regulation
UniRef90	UHGV-1982132_5	UniRef90_E2ZIF0	188.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1982132_5	748224.HMPREF9436_01444	188.0	0	N/A	N/A
Pfam	UHGV-1982132_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1982132_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1982132_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_6	phrog_14088	44.2	0.0000000000017	N/A	unknown function
UniRef90	UHGV-1982132_6	UniRef90_UPI001D07CB3C	53.5	0.000000054	carboxypeptidase	N/A
eggNOG-mapper	UHGV-1982132_6	1235802.C823_04730	55.8	0.000000000986	N/A	N/A
PHROG	UHGV-1982132_7	phrog_1305	92.4	4.5e-27	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1982132_7	UniRef90_A0A3A6EAL3	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-1982132_7	748224.HMPREF9436_01446	199.0	0	N/A	N/A
Pfam	UHGV-1982132_7	PF13643	N/A	N/A	N/A	DUF4145
UniRef90	UHGV-1982132_11	UniRef90_A0A2A7BGV7	76.6	1.11e-16	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1982132_11	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1982132_11	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1982132_11	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1982132_13	PF12270,NF040944	N/A	N/A	N/A	N/A
UniRef90	UHGV-1982132_15	UniRef90_UPI001D0E65C2	147.0	1.5134e-43	N/A	N/A
structural_annotation	UHGV-1982132_15	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_16	phrog_1733	57.6	1.1e-16	N/A	unknown function
UniRef90	UHGV-1982132_16	UniRef90_UPI00196846D9	270.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-1982132_16	665956.HMPREF1032_03597	190.0	0	DNA binding	N/A
COG	UHGV-1982132_16	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-1982132_17	K03546	60.0	3e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1982132_17	phrog_1499	468.3	0	N/A	unknown function
UniRef90	UHGV-1982132_17	UniRef90_A0A3A6KBP8	733.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-1982132_17	1235798.C817_04766	492.0	0	AAA ATPase domain	N/A
Pfam	UHGV-1982132_17	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1982132_17	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1982132_17	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_18	phrog_124	228.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1982132_18	UniRef90_UPI00122C2B12	574.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1982132_18	645991.Sgly_0321	367.0	0	AAA domain	N/A
Pfam	UHGV-1982132_18	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1982132_18	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_19	phrog_2698	193.2	0	N/A	unknown function
UniRef90	UHGV-1982132_19	UniRef90_A0A291T9B6	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-1982132_19	394503.Ccel_3308	132.0	3.49e-37	N/A	N/A
structural_annotation	UHGV-1982132_19	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-1982132_20	K17677	352.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1982132_20	phrog_16	274.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1982132_20	UniRef90_A0A3A6K1C0	993.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1982132_20	610130.Closa_1369	767.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1982132_20	mREase_IV_00005	139.1	3.50002e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1982132_20	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1982132_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1982132_20	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1982132_20	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1982132_21	K07505	370.1	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1982132_21	phrog_2597	1096.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1982132_21	UniRef90_A0A2A6Z731	1391.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1982132_21	742738.HMPREF9460_01357	869.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1982132_21	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1982132_21	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1982132_21	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1982132_21	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1982132_22	K01160	46.9	0.00000000000069	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1982132_22	phrog_140	91.5	9.8e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1982132_22	UniRef90_UPI00122CFAB3	257.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1982132_22	478749.BRYFOR_07588	147.0	9.94922e-44	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1982132_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1982132_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1982132_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_23	phrog_36	78.3	1.1e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1982132_23	UniRef90_A0A3A6JSY6	92.4	2.04e-21	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1982132_23	748224.HMPREF9436_01463	101.0	1.29e-25	N/A	N/A
structural_annotation	UHGV-1982132_23	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1982132_25	K06909	81.9	9.1e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1982132_25	phrog_2	117.5	1.8e-34	terminase large subunit	head and packaging
UniRef90	UHGV-1982132_25	UniRef90_A0A844EGH8	755.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1982132_25	1449050.JNLE01000003_gene3895	396.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1982132_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1982132_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1982132_25	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_26	phrog_533	274.6	0	portal protein	head and packaging
UniRef90	UHGV-1982132_26	UniRef90_A0A7G9WF85	372.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1982132_26	718252.FP2_06700	872.0	0	N/A	N/A
structural_annotation	UHGV-1982132_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_27	phrog_581	351.0	0	minor head protein	head and packaging
UniRef90	UHGV-1982132_27	UniRef90_UPI001C0164DE	965.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1982132_27	718252.FP2_06690	649.0	0	N/A	N/A
Pfam	UHGV-1982132_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1982132_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1982132_27	PF06152,PF12106	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_28	phrog_27009	48.7	0.00000000000012	N/A	unknown function
PHROG	UHGV-1982132_29	phrog_194	75.3	1e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-1982132_29	UniRef90_D4K444	288.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1982132_29	748224.HMPREF9436_03336	237.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1982132_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1982132_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_30	phrog_267	67.2	2e-19	major head protein	head and packaging
UniRef90	UHGV-1982132_30	UniRef90_A0A0D8J2H9	348.0	0	p22 coat protein 5	N/A
eggNOG-mapper	UHGV-1982132_30	718252.FP2_06660	454.0	0	N/A	N/A
structural_annotation	UHGV-1982132_30	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_31	phrog_541	84.4	1.1e-24	head-tail adaptor	connector
PHROG	UHGV-1982132_32	phrog_3366	107.1	1.4e-31	N/A	unknown function
Pfam	UHGV-1982132_32	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1982132_32	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_33	phrog_556	104.9	4.2e-31	minor head protein	head and packaging
UniRef90	UHGV-1982132_33	UniRef90_UPI000B10EF5E	240.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1982132_33	718252.FP2_06630	224.0	0	Minor capsid protein	N/A
Pfam	UHGV-1982132_33	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1982132_33	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_34	phrog_3266	138.4	2.50006e-41	tail completion	connector
UniRef90	UHGV-1982132_34	UniRef90_A0A848BCA5	81.6	5.96e-17	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-1982132_34	748224.HMPREF9436_03331	221.0	0	N/A	N/A
structural_annotation	UHGV-1982132_34	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_35	phrog_820	102.2	3.5e-30	major tail protein	tail
eggNOG-mapper	UHGV-1982132_35	748224.HMPREF9436_03330	258.0	0	N/A	N/A
structural_annotation	UHGV-1982132_35	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_36	phrog_4450	119.1	1.8e-35	N/A	unknown function
structural_annotation	UHGV-1982132_36	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_37	phrog_706	125.5	3.3e-37	N/A	unknown function
UniRef90	UHGV-1982132_37	UniRef90_E2ZNP9	255.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1982132_37	748224.HMPREF9436_03328	255.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1982132_37	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1982132_37	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_38	phrog_28775	659.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1982132_38	UniRef90_A0A3F3JUJ4	817.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1982132_38	411470.RUMGNA_02228	200.0	0	tape measure	N/A
Pfam	UHGV-1982132_38	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-1982132_38	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1982132_38	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_39	phrog_28775	139.3	2.4e-41	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1982132_39	748224.HMPREF9436_03326	102.0	1.74e-24	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1982132_39	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1982132_40	phrog_36410	43.2	0.0000000000054	N/A	unknown function
UniRef90	UHGV-1982132_40	UniRef90_UPI00130E98E0	300.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1982132_40	748224.HMPREF9436_03325	466.0	0	Phage tail protein	N/A
structural_annotation	UHGV-1982132_40	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_41	phrog_538	185.9	0	minor tail protein	tail
UniRef90	UHGV-1982132_41	UniRef90_UPI001899858F	108.0	2.61e-23	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1982132_41	748224.HMPREF9436_03324	603.0	0	N/A	N/A
Pfam	UHGV-1982132_41	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1982132_41	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_42	phrog_9534	265.7	0	head protein	head and packaging
eggNOG-mapper	UHGV-1982132_42	748224.HMPREF9436_03323	278.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1982132_42	PF21567	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_43	phrog_2310	51.5	0.0000000000000098	N/A	unknown function
KOfam	UHGV-1982132_44	K08640	101.4	1.5e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1982132_44	phrog_894	110.6	1.6e-32	endolysin	lysis
UniRef90	UHGV-1982132_44	UniRef90_A0A1C5NY12	233.0	0	Zinc D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-1982132_44	748224.HMPREF9436_03320	230.0	0	Peptidase M15	N/A
Pfam	UHGV-1982132_44	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1982132_44	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1982132_44	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_45	phrog_199	91.8	7e-27	holin	lysis
UniRef90	UHGV-1982132_45	UniRef90_A0A2A6Z8T2	249.0	0	Holin	N/A
eggNOG-mapper	UHGV-1982132_45	742740.HMPREF9474_02333	190.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1982132_45	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1982132_45	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1982132_45	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1982132_45	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1982132_46	phrog_13712	80.4	2.2e-23	holin	lysis
eggNOG-mapper	UHGV-1982132_46	397291.C804_01108	77.0	2.61e-16	N/A	N/A
structural_annotation	UHGV-1982132_46	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-1982132_48	K00763	54.8	0.0000000000000012	pncB, NAPRT1; nicotinate phosphoribosyltransferase [EC:6.3.4.21]	N/A
UniRef90	UHGV-1982132_48	UniRef90_A0A316LYV5	89.0	1.25e-19	Nicotinate phosphoribosyltransferase	N/A
eggNOG-mapper	UHGV-1982132_48	657322.FPR_28390	280.0	0	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	N/A
Pfam	UHGV-1982132_48	PF17956	N/A	N/A	Nicotinate phosphoribosyltransferase C-terminal domain	NAPRTase_C
COG	UHGV-1982132_48	COG1488	N/A	N/A	Nicotinic acid phosphoribosyltransferase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1982132	Yes	35,553	61	100	1
UHGV-2200600	No	22,449	62	64	1
UHGV-1981174	No	15,439	62	44	1