vOTU vOTU-059970

vOTU: vOTU-059970

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059970
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-03398 → vGENUS-13740 → vSUBGEN-22360 → vOTU-059970
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0213056
Biosample ID	SAMN09781788
Genome length (bp)	35,985 bps
CheckV completeness	98.53% (High-quality)
CDS count	63
CDS density	95.15%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	70	Host agreement	81.43
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0213056_3	UniRef90_A0A3D1I232	78.6	4.38e-17	zinc_ribbon_2 domain-containing protein	N/A
structural_annotation	UHGV-0213056_3	TIGR04165,COG3478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213056_4	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0213056_5	K14059	94.1	2.1e-27	int; integrase	N/A
PHROG	UHGV-0213056_5	phrog_1	120.6	1.4e-35	integrase	integration and excision
UniRef90	UHGV-0213056_5	UniRef90_UPI00195CC1EE	441.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0213056_5	411471.SUBVAR_05816	120.0	2.15e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0213056_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0213056_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0213056_5	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213056_6	1226322.HMPREF1545_00079	54.7	0.0000000336	N/A	N/A
UniRef90	UHGV-0213056_7	UniRef90_A0A843GWV6	90.9	1.06e-21	Rubrerythrin domain-containing protein	N/A
structural_annotation	UHGV-0213056_8	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213056_9	397290.C810_05212	55.5	0.00000121	N/A	N/A
PHROG	UHGV-0213056_10	phrog_22984	42.5	0.000000000012	N/A	unknown function
structural_annotation	UHGV-0213056_11	PF20477,NF033819	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213056_12	UniRef90_A0A8D9PDT6	83.6	2.82e-19	Transcriptional regulatory protein	N/A
PHROG	UHGV-0213056_13	phrog_1129	69.7	2.9e-20	holin	lysis
UniRef90	UHGV-0213056_13	UniRef90_A0A2V2CUX8	126.0	3.4e-36	Enolase	N/A
eggNOG-mapper	UHGV-0213056_13	1226322.HMPREF1545_00069	117.0	2.06e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0213056_13	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0213056_13	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_14	phrog_937	59.6	6.1e-17	hemolysin	other
eggNOG-mapper	UHGV-0213056_14	1297617.JPJD01000099_gene2176	71.6	0.0000000000000053	N/A	N/A
PHROG	UHGV-0213056_15	phrog_1493	57.0	4.5e-16	endolysin	lysis
UniRef90	UHGV-0213056_15	UniRef90_A0A1C6GMR6	197.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0213056_15	871963.Desdi_1346	117.0	4.34e-28	NLP P60 protein	N/A
Pfam	UHGV-0213056_15	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0213056_15	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0213056_15	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_16	phrog_59	142.8	1.10002e-42	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213056_16	UniRef90_UPI0018E45219	174.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0213056_16	51369.Q8LTA0_9CAUD	159.0	0	HNH endonuclease	N/A
PADLOC	UHGV-0213056_16	HEase_00016	98.2	9.1e-29	homing endonuclease	RM
Pfam	UHGV-0213056_16	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0213056_16	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0213056_16	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_18	phrog_9994	210.4	0	N/A	unknown function
UniRef90	UHGV-0213056_18	UniRef90_A0A7K3I4P1	144.0	5.4e-39	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0213056_18	411468.CLOSCI_00275	126.0	1.47e-32	N/A	N/A
structural_annotation	UHGV-0213056_18	PF20747	N/A	N/A	N/A	N/A
KOfam	UHGV-0213056_19	K13925	54.9	6.3e-16	pfbA; plasmin and fibronectin-binding protein A	N/A
PHROG	UHGV-0213056_19	phrog_538	194.1	0	minor tail protein	tail
eggNOG-mapper	UHGV-0213056_19	1256908.HMPREF0373_00466	291.0	0	N/A	N/A
Pfam	UHGV-0213056_19	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
Pfam	UHGV-0213056_19	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0213056_19	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
PHROG	UHGV-0213056_20	phrog_33	59.8	6.7e-17	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0213056_20	1256908.HMPREF0373_00467	265.0	0	N/A	N/A
structural_annotation	UHGV-0213056_20	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_21	phrog_6900	132.2	5.7e-39	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0213056_21	1111121.HMPREF1247_0787	192.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0213056_21	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0213056_21	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_23	phrog_18646	67.5	1.7e-19	N/A	unknown function
UniRef90	UHGV-0213056_23	UniRef90_B6CXF0	81.3	1.69e-17	Peptidase-colicin	N/A
PHROG	UHGV-0213056_24	phrog_885	87.7	1.2e-25	major tail protein	tail
UniRef90	UHGV-0213056_24	UniRef90_A0A843J9F0	189.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0213056_24	1504822.CCNO01000012_gene492	207.0	0	N/A	N/A
structural_annotation	UHGV-0213056_24	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213056_25	UniRef90_A0A415JI88	90.1	7.57e-21	N/A	N/A
structural_annotation	UHGV-0213056_25	PF11367	N/A	N/A	N/A	N/A
Pfam	UHGV-0213056_26	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0213056_26	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0213056_26	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_28	phrog_267	186.2	0	major head protein	head and packaging
UniRef90	UHGV-0213056_28	UniRef90_UPI001F06E68A	259.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0213056_28	673376.F2VHW8_9CAUD	248.0	0	viral capsid	N/A
Pfam	UHGV-0213056_28	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
structural_annotation	UHGV-0213056_28	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213056_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_30	phrog_5	54.4	0.0000000000000034	tail completion or Neck1 protein	connector
UniRef90	UHGV-0213056_30	UniRef90_A0A7X5E1T2	94.4	3.79e-22	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0213056_30	1158602.I590_02569	66.2	0.00000000000565	N/A	N/A
structural_annotation	UHGV-0213056_30	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_32	phrog_2468	106.4	1.2e-32	head morphogenesis	head and packaging
UniRef90	UHGV-0213056_32	UniRef90_A0A7X5E1T7	331.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0213056_32	1111121.HMPREF1247_0797	137.0	3.86e-32	cell adhesion	N/A
Pfam	UHGV-0213056_32	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0213056_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213056_32	PF04233,PF21814,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_33	phrog_64	158.5	0	portal protein	head and packaging
UniRef90	UHGV-0213056_33	UniRef90_UPI0018A8A301	583.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0213056_33	673376.F2VHW1_9CAUD	205.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0213056_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0213056_33	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_34	phrog_38	165.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0213056_34	UniRef90_UPI00166CA12B	451.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0213056_34	742722.HMPREF9463_00238	448.0	0	N/A	N/A
structural_annotation	UHGV-0213056_34	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
KOfam	UHGV-0213056_37	K07319	121.8	6.5e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0213056_37	phrog_498	433.5	0	DNA methyltransferase	other
UniRef90	UHGV-0213056_37	UniRef90_UPI0012DE0D94	426.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0213056_37	693746.OBV_19980	405.0	0	DNA methylase	N/A
PADLOC	UHGV-0213056_37	MTase_II_00015	226.2	0	Type II methyltransferase	RM
Pfam	UHGV-0213056_37	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0213056_37	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0213056_37	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0213056_37	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0213056_38	K07729	47.2	0.00000000000047	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0213056_38	phrog_8	56.5	6.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213056_38	UniRef90_UPI0012AB93AE	81.6	7.38e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0213056_38	1226322.HMPREF1545_00039	71.2	0.00000000000000186	sequence-specific DNA binding	N/A
Pfam	UHGV-0213056_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213056_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213056_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_39	phrog_190	116.6	2e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213056_39	UniRef90_UPI000367648A	110.0	9.64e-29	N/A	N/A
eggNOG-mapper	UHGV-0213056_39	445974.CLORAM_02947	108.0	3.01e-29	N/A	N/A
Pfam	UHGV-0213056_39	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0213056_39	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_41	phrog_924	43.0	0.0000000000023	N/A	unknown function
UniRef90	UHGV-0213056_41	UniRef90_A0A417H740	144.0	2.90994e-41	N/A	N/A
eggNOG-mapper	UHGV-0213056_41	1316932.MHH_c17560	56.6	0.0000000786	N/A	N/A
Pfam	UHGV-0213056_41	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0213056_45	phrog_111	157.7	0	DNA methyltransferase	other
UniRef90	UHGV-0213056_45	UniRef90_A0A316S635	210.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0213056_45	1450694.BTS2_0497	186.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0213056_45	oMTase_00015	185.0	0	orphan methyltransferase	RM
Pfam	UHGV-0213056_45	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0213056_45	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_46	phrog_757	228.1	0	DNA methyltransferase	other
UniRef90	UHGV-0213056_46	UniRef90_UPI0006A41431	252.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0213056_46	1235790.C805_00032	248.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0213056_46	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0213056_46	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0213056_47	K05840	41.9	0.000000000011	DRD5; dopamine receptor D5	N/A
PHROG	UHGV-0213056_47	phrog_15773	69.1	3.8e-20	N/A	unknown function
dbAPIS	UHGV-0213056_47	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-0213056_48	phrog_7566	73.8	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0213056_48	693746.OBV_25470	73.6	0.00000000000000167	N/A	N/A
PHROG	UHGV-0213056_49	phrog_72	44.6	0.0000000000016	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213056_49	UniRef90_A0A2Z4Q9W9	127.0	4.81e-34	NinB	N/A
eggNOG-mapper	UHGV-0213056_49	1304866.K413DRAFT_1197	70.9	0.000000000000484	N/A	N/A
structural_annotation	UHGV-0213056_49	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_50	phrog_9804	128.4	5.3e-38	N/A	unknown function
UniRef90	UHGV-0213056_50	UniRef90_A0A174S716	167.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0213056_50	585394.RHOM_14005	117.0	6.63e-31	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0213056_50	cluster_137185	112.0	8.75e-34	NA	N/A
structural_annotation	UHGV-0213056_50	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_51	phrog_270	87.8	1.5e-25	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213056_51	UniRef90_A0A417QFV0	131.0	9.89e-34	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0213056_51	411490.ANACAC_00800	136.0	3.45e-36	N/A	N/A
structural_annotation	UHGV-0213056_51	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0213056_52	K03111	141.2	1.10002e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0213056_52	phrog_44	139.1	2.50006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213056_52	UniRef90_A0A316NQ75	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0213056_52	1007096.BAGW01000023_gene151	167.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0213056_52	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0213056_52	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0213056_52	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0213056_52	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0213056_52	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_53	phrog_155	136.3	2.29999e-40	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213056_53	UniRef90_UPI000985D1CB	186.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0213056_53	97138.C820_00777	170.0	0	ERF superfamily	N/A
Pfam	UHGV-0213056_53	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0213056_53	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_55	phrog_253	100.1	2.2e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213056_55	UniRef90_A0A1C5N4H2	141.0	7.09e-40	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0213056_55	1410670.JHXF01000015_gene2268	110.0	1.67e-28	Siphovirus Gp157	N/A
Pfam	UHGV-0213056_55	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0213056_55	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0213056_56	phrog_2113	44.0	0.0000000000017	N/A	unknown function
UniRef90	UHGV-0213056_56	UniRef90_A0A8D9UH91	108.0	1.88e-26	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0213056_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0213056_56	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213056_61	1235835.C814_03153	57.8	0.000000000351	N/A	N/A
structural_annotation	UHGV-0213056_61	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0213056	Yes	35,985	54	99	1
UHGV-0172524	No	30,134	53	83	1
UHGV-0135359	No	16,982	54	47	1
UHGV-1581928	No	16,962	54	46	1