vOTU vOTU-059992

vOTU: vOTU-059992

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059992
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vSUBGEN-23445 → vOTU-059992
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0022568
Biosample ID	SAMEA4766167
Genome length (bp)	45,278 bps
CheckV completeness	99.90% (High-quality)
CDS count	71
CDS density	89.77%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	264	Host agreement	98.11
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	14	Host agreement	78.57

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0022568_4	UniRef90_R6T064	80.1	0.00000000000000557	NUMOD4 domain-containing protein	N/A
structural_annotation	UHGV-0022568_4	PF13392,PF07453	N/A	N/A	N/A	N/A
KOfam	UHGV-0022568_5	K02315	117.7	1.3e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0022568_5	phrog_50	104.0	1.8e-30	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022568_5	UniRef90_A0A395WER8	532.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0022568_5	1211844.CBLM010000016_gene1509	135.0	1.23e-35	N/A	N/A
Pfam	UHGV-0022568_5	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0022568_5	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0022568_5	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_6	phrog_428	144.6	7.90332e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022568_6	UniRef90_A0A395WBX6	392.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0022568_6	279808.SH2379	147.0	3.17e-40	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0022568_6	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0022568_6	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0022568_6	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0022568_6	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0022568_10	K04763	131.8	7.7e-39	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0022568_10	phrog_1	113.9	1.8e-33	integrase	integration and excision
UniRef90	UHGV-0022568_10	UniRef90_A0A395W9T7	572.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0022568_10	908340.HMPREF9406_2589	223.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0022568_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022568_10	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0022568_10	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0022568_14	K18830	60.9	1.1e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0022568_14	phrog_2967	53.3	0.0000000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022568_14	UniRef90_A0A395WA05	206.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0022568_14	999413.HMPREF1094_02045	100.0	1.95e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0022568_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022568_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022568_14	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022568_15	UniRef90_A0A4R1RC20	109.0	7.85e-27	Putative heavy-metal-binding protein	N/A
eggNOG-mapper	UHGV-0022568_15	517418.Ctha_1419	110.0	1.17e-25	Putative heavy-metal-binding	N/A
Pfam	UHGV-0022568_15	PF01906	N/A	N/A	Putative heavy-metal-binding	YbjQ_1
COG	UHGV-0022568_15	COG0393	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_16	phrog_5059	182.5	0	N/A	unknown function
UniRef90	UHGV-0022568_16	UniRef90_A0A395WDV4	493.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022568_16	1232446.BAIE02000002_gene792	172.0	0	N/A	N/A
Pfam	UHGV-0022568_16	PF08861	N/A	N/A	N/A	DUF1828
Pfam	UHGV-0022568_16	PF08862	N/A	N/A	N/A	DUF1829
structural_annotation	UHGV-0022568_16	PF08862,PF08861,MF_00722,COG3372	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022568_17	UniRef90_A0A2A2EE23	72.8	0.000000000000181	N/A	N/A
eggNOG-mapper	UHGV-0022568_17	428127.EUBDOL_01263	96.3	2.3e-23	N/A	N/A
KOfam	UHGV-0022568_18	K14059	198.4	0	int; integrase	N/A
PHROG	UHGV-0022568_18	phrog_1	177.4	0	integrase	integration and excision
UniRef90	UHGV-0022568_18	UniRef90_A0A395WBW7	738.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0022568_18	1235796.C815_00955	299.0	0	DNA integration	N/A
Pfam	UHGV-0022568_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022568_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0022568_18	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0022568_19	K01447	60.1	4.3e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0022568_19	phrog_7698	153.2	2.8026e-45	endolysin	lysis
UniRef90	UHGV-0022568_19	UniRef90_UPI001D0AA402	543.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0022568_19	1125712.HMPREF1316_2631	145.0	2.41e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0022568_19	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0022568_19	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0022568_19	COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_21	phrog_443	51.6	0.000000000000026	holin	lysis
UniRef90	UHGV-0022568_21	UniRef90_A0A2U2ELA1	77.4	2.62e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-0022568_21	476272.RUMHYD_01759	83.6	2.2e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0022568_21	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0022568_21	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_23	phrog_20016	64.3	1.5e-18	N/A	unknown function
UniRef90	UHGV-0022568_23	UniRef90_A0A395WF88	261.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0022568_23	1226322.HMPREF1545_00077	58.2	0.00000000877	N/A	N/A
Pfam	UHGV-0022568_23	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0022568_23	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022568_24	UniRef90_A0A8F0WFQ8	69.7	0.000000000103	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0022568_24	476272.RUMHYD_01770	114.0	1.27e-28	N/A	N/A
KOfam	UHGV-0022568_29	K21478	61.8	1.2e-18	icaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]	N/A
PHROG	UHGV-0022568_29	phrog_11541	41.8	8.6e-16	N/A	unknown function
Pfam	UHGV-0022568_29	PF01522	N/A	N/A	Polysaccharide deacetylase	Polysacc_deac_1
COG	UHGV-0022568_29	COG0726	N/A	N/A	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	N/A
structural_annotation	UHGV-0022568_30	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022568_31	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022568_32	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_33	phrog_1067	49.6	5.6e-24	minor head protein	head and packaging
eggNOG-mapper	UHGV-0022568_33	1232446.BAIE02000002_gene836	62.8	0.000000186	Phage minor structural protein	N/A
Pfam	UHGV-0022568_33	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-0022568_33	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0022568_33	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0022568_33	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_34	phrog_33	53.6	0.0000000000000057	distal tail protein Dit	tail
UniRef90	UHGV-0022568_34	UniRef90_A0A1C6JHE5	65.5	0.00000000456	Phage-related protein	N/A
Pfam	UHGV-0022568_34	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0022568_34	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0022568_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0022568_34	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0022568_35	K10352	44.1	0.00000000000056	MYH9s; myosin heavy chain 9/10/11/14	N/A
PHROG	UHGV-0022568_35	phrog_13339	330.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0022568_35	UniRef90_A0A395WD11	1929.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0022568_35	411490.ANACAC_00710	249.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0022568_35	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0022568_35	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0022568_35	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0022568_35	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_36	phrog_709	46.6	0.00000000000052	N/A	unknown function
structural_annotation	UHGV-0022568_36	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_37	phrog_88	141.0	6.30024e-42	major tail protein	tail
UniRef90	UHGV-0022568_37	UniRef90_A0A395WA58	399.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0022568_37	1033744.CAEL01000029_gene1276	152.0	5.1848e-44	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0022568_37	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0022568_37	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022568_38	UniRef90_A0A374RUJ8	142.0	7.14999e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0022568_38	86416.Clopa_0344	57.8	0.00000000894	N/A	N/A
structural_annotation	UHGV-0022568_38	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022568_39	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_40	phrog_1951	73.0	2.8e-21	head-tail adaptor	connector
UniRef90	UHGV-0022568_40	UniRef90_A0A395WC07	227.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0022568_40	588581.Cpap_1270	62.8	0.0000000000334	N/A	N/A
structural_annotation	UHGV-0022568_40	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_41	phrog_5223	52.7	0.0000000000000058	neck protein	connector
UniRef90	UHGV-0022568_41	UniRef90_A0A374RXD1	82.8	1.09e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-0022568_41	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_42	phrog_10	79.1	6.1e-23	major head protein	head and packaging
UniRef90	UHGV-0022568_42	UniRef90_A0A395WF70	788.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0022568_42	1536774.H70357_10630	168.0	1.26117e-44	Phage capsid family	N/A
Pfam	UHGV-0022568_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0022568_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0022568_42	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0022568_42	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0022568_43	K06904	88.2	1.1e-25	N/A	N/A
PHROG	UHGV-0022568_43	phrog_80	117.5	1.8e-34	head maturation protease	head and packaging
UniRef90	UHGV-0022568_43	UniRef90_A0A413UET6	352.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0022568_43	411470.RUMGNA_02064	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0022568_43	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0022568_43	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0022568_43	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0022568_43	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_44	phrog_12	107.0	1.4e-31	portal protein	head and packaging
UniRef90	UHGV-0022568_44	UniRef90_A0A395W9X2	815.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0022568_44	1203606.HMPREF1526_01337	292.0	0	Portal protein	N/A
Pfam	UHGV-0022568_44	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0022568_44	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0022568_44	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_45	phrog_9	310.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0022568_45	UniRef90_A0A395WD03	1123.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0022568_45	742740.HMPREF9474_04307	548.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0022568_45	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0022568_45	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0022568_45	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0022568_45	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_46	phrog_361	74.5	1.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0022568_46	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0022568_46	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-0022568_46	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0022568_46	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0022568_46	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_47	phrog_119	59.0	8.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022568_47	UniRef90_A0A395WA48	262.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0022568_47	1211814.CAPG01000074_gene3460	66.6	0.00000000000135	HNH endonuclease	N/A
Pfam	UHGV-0022568_47	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0022568_47	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0022568_51	1403948.Q618_VCMC00003G0140	98.6	2.27e-23	N/A	N/A
PHROG	UHGV-0022568_56	phrog_4525	66.1	6.5e-19	N/A	unknown function
PHROG	UHGV-0022568_57	phrog_2316	41.5	0.000000000024	N/A	unknown function
UniRef90	UHGV-0022568_57	UniRef90_A0A3E4YBW5	125.0	1.48e-35	N/A	N/A
eggNOG-mapper	UHGV-0022568_57	1280676.AUJO01000024_gene3262	63.9	0.00000000000428	N/A	N/A
structural_annotation	UHGV-0022568_57	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022568_58	PF10879	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_59	phrog_478	106.2	1.9e-31	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0022568_59	UniRef90_A0A0J8Z1B9	175.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0022568_59	272623.L62008	80.9	9.63e-18	N/A	N/A
UniRef90	UHGV-0022568_60	UniRef90_A0A413UEX6	296.0	0	N/A	N/A
structural_annotation	UHGV-0022568_60	PF07374,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_66	phrog_954	247.7	0	DNA methyltransferase	other
UniRef90	UHGV-0022568_66	UniRef90_A0A413UEW6	339.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0022568_66	1321779.HMPREF1984_00119	251.0	0	methyltransferase	N/A
PADLOC	UHGV-0022568_66	MTase_II_00074	248.3	0	Type II methyltransferase	RM
COG	UHGV-0022568_66	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0022568_66	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_69	phrog_2715	124.9	4.7e-37	N/A	unknown function
eggNOG-mapper	UHGV-0022568_69	642492.Clole_0950	130.0	1.37e-36	N/A	N/A
structural_annotation	UHGV-0022568_69	PF18406	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_70	phrog_4601	42.2	0.0000000000011	N/A	unknown function
structural_annotation	UHGV-0022568_70	PF17888	N/A	N/A	N/A	N/A
PHROG	UHGV-0022568_71	phrog_173	95.3	6.7e-28	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022568_71	UniRef90_UPI001C25836D	253.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-0022568_71	387092.NIS_1015	57.0	0.000000153	PFAM dUTPase	N/A
Pfam	UHGV-0022568_71	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0022568_71	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0022568_71	PF08761,COG4508	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0022568	Yes	45,278	33	100	1