vOTU vOTU-060037

vOTU: vOTU-060037

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060037
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000 → CAG-1000 sp000434555
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00604 → vGENUS-14085 → vSUBGEN-23299 → vOTU-060037
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0017061
Biosample ID	SAMEA4766006
Genome length (bp)	36,033 bps
CheckV completeness	95.67% (High-quality)
CDS count	61
CDS density	91.52%
tRNA count	2
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000	Total connections	20	Host agreement	70
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000 → CAG-1000 sp000434555	Total connections	10	Host agreement	70

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0017061_1	phrog_7566	43.2	0.0000000000067	N/A	unknown function
KOfam	UHGV-0017061_2	K08640	83.9	2.8e-24	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0017061_2	phrog_894	73.6	2.5e-21	endolysin	lysis
UniRef90	UHGV-0017061_2	UniRef90_A0A8A2W3W1	99.4	1.84e-22	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0017061_2	903814.ELI_0060	88.6	1.46e-18	Peptidase M15	N/A
Pfam	UHGV-0017061_2	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0017061_2	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017061_3	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_5	phrog_372	199.3	0	tail protein	tail
UniRef90	UHGV-0017061_5	UniRef90_UPI001E5C78A4	107.0	1.07e-20	N/A	N/A
eggNOG-mapper	UHGV-0017061_5	658655.HMPREF0988_00525	89.4	0.00000000000000121	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0017061_5	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0017061_5	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0017061_5	PF05895,MF_04116,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_6	phrog_6616	72.0	4e-21	tail protein	tail
eggNOG-mapper	UHGV-0017061_6	1305708.M9Q2I5_9CAUD	65.9	0.0000000282	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-0017061_6	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_7	phrog_1194	68.0	1.2e-19	N/A	unknown function
structural_annotation	UHGV-0017061_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_8	phrog_1535	112.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0017061_8	UniRef90_R5A122	680.0	0	ETS domain-containing protein	N/A
eggNOG-mapper	UHGV-0017061_8	645991.Sgly_0352	261.0	0	SLT domain	N/A
COG	UHGV-0017061_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0017061_9	phrog_8355	83.3	1.3e-24	N/A	unknown function
UniRef90	UHGV-0017061_9	UniRef90_UPI001D0684E3	71.6	0.0000000000000465	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0017061_9	1123263.AUKY01000051_gene1072	72.4	0.00000000000000343	N/A	N/A
Pfam	UHGV-0017061_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
PHROG	UHGV-0017061_10	phrog_8300	80.7	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0017061_10	1507.HMPREF0262_01185	53.1	0.000000162	N/A	N/A
structural_annotation	UHGV-0017061_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_11	phrog_820	81.5	8.7e-24	major tail protein	tail
UniRef90	UHGV-0017061_11	UniRef90_R6DLA9	103.0	2.58e-25	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0017061_11	1282664.H354_06691	110.0	8.54e-29	N/A	N/A
structural_annotation	UHGV-0017061_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_12	phrog_2595	62.8	5.1e-18	head-tail connector protein	connector
eggNOG-mapper	UHGV-0017061_12	394503.Ccel_3286	78.2	1.01e-16	N/A	N/A
Pfam	UHGV-0017061_12	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0017061_12	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_13	phrog_556	73.0	3.4e-21	minor head protein	head and packaging
UniRef90	UHGV-0017061_13	UniRef90_UPI00058FDD53	122.0	1.84e-33	minor capsid protein	N/A
eggNOG-mapper	UHGV-0017061_13	742740.HMPREF9474_03509	115.0	1.14e-31	N/A	N/A
PHROG	UHGV-0017061_14	phrog_8710	126.2	1e-37	N/A	unknown function
UniRef90	UHGV-0017061_14	UniRef90_UPI0018A9BDCF	75.9	0.0000000000000015	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0017061_14	1294142.CINTURNW_1032	87.0	1.07e-20	N/A	N/A
structural_annotation	UHGV-0017061_14	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_15	phrog_541	92.0	4.6e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0017061_15	483218.BACPEC_01153	93.2	1.02e-22	N/A	N/A
PHROG	UHGV-0017061_18	phrog_422	230.5	0	major head protein	head and packaging
UniRef90	UHGV-0017061_18	UniRef90_W0U896	377.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0017061_18	1160721.RBI_II00538	377.0	0	N/A	N/A
structural_annotation	UHGV-0017061_18	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_19	phrog_2303	82.9	4.8e-24	head scaffolding protein	head and packaging
structural_annotation	UHGV-0017061_19	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_21	phrog_581	118.1	0	minor head protein	head and packaging
UniRef90	UHGV-0017061_21	UniRef90_R5A5Z0	626.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0017061_21	1151292.QEW_4396	258.0	0	COG3209 Rhs family protein	N/A
Pfam	UHGV-0017061_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0017061_21	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0017061_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017061_21	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_23	phrog_533	244.7	0	portal protein	head and packaging
UniRef90	UHGV-0017061_23	UniRef90_R5A3Z5	984.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0017061_23	1117108.PAALTS15_13582	443.0	0	N/A	N/A
structural_annotation	UHGV-0017061_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017061_24	UniRef90_R5A0K2	970.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0017061_24	645991.Sgly_0335	477.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0017061_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0017061_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_25	phrog_2412	69.4	4.5e-20	N/A	unknown function
UniRef90	UHGV-0017061_25	UniRef90_R5AAQ5	253.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017061_25	1122981.AUME01000026_gene531	75.9	0.00000000000000104	N/A	N/A
PHROG	UHGV-0017061_27	phrog_17273	41.3	0.0000000000053	N/A	unknown function
Pfam	UHGV-0017061_27	PF03382	N/A	N/A	N/A	DUF285
NCBIFam	UHGV-0017061_27	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-0017061_28	PF17790,NF011770	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017061_29	PF15456	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_30	phrog_20735	190.4	0	N/A	unknown function
UniRef90	UHGV-0017061_30	UniRef90_R5A140	421.0	0	RNA_ligase domain-containing protein	N/A
Pfam	UHGV-0017061_30	PF09414	N/A	N/A	RNA ligase	RNA_ligase
structural_annotation	UHGV-0017061_30	PF09414,MF_04150,TIGR01209,COG1423	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017061_31	PF16360	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_32	phrog_98	75.4	6.7e-22	N/A	unknown function
UniRef90	UHGV-0017061_32	UniRef90_UPI0018CFC757	85.1	1.02e-18	YopX family protein	N/A
eggNOG-mapper	UHGV-0017061_32	888055.HMPREF9015_01088	59.7	0.00000000126	YopX protein	N/A
Pfam	UHGV-0017061_32	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0017061_32	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0017061_32	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017061_39	PF09947	N/A	N/A	N/A	N/A
KOfam	UHGV-0017061_43	K03111	122.1	6.9e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0017061_43	phrog_44	130.2	1.4e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017061_43	UniRef90_R5A082	159.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017061_43	397291.C804_00927	124.0	1.49e-34	Single-strand binding protein family	N/A
Pfam	UHGV-0017061_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017061_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017061_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0017061_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017061_43	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_44	phrog_1123	56.7	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0017061_44	1308863.U5J9F3_9CAUD	56.6	0.0000000279	N/A	N/A
PHROG	UHGV-0017061_45	phrog_72	55.4	8.3e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017061_45	UniRef90_UPI000C7BF263	124.0	3.28e-33	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0017061_45	508419.F8J186_9CAUD	132.0	7.19e-37	N/A	N/A
structural_annotation	UHGV-0017061_45	PF05772,NF007281	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017061_47	1123263.AUKY01000096_gene1822	56.6	0.000000225	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0017061_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0017061_50	phrog_434	78.6	9.1e-23	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0017061_50	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0017061_50	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_51	phrog_155	79.0	6.4e-23	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017061_51	UniRef90_UPI0018AB5C6B	124.0	1.9e-31	ERF family protein	N/A
eggNOG-mapper	UHGV-0017061_51	536232.CLM_1632	107.0	4.7e-26	ERF superfamily	N/A
Pfam	UHGV-0017061_51	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0017061_51	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0017061_53	K02086	79.0	5.4e-23	dnaD; DNA replication protein	N/A
PHROG	UHGV-0017061_53	phrog_5708	244.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017061_53	UniRef90_UPI000EA32791	192.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0017061_53	1415774.U728_1701	181.0	0	DnaD domain protein	N/A
Pfam	UHGV-0017061_53	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0017061_53	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0017061_53	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0017061_53	TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_55	phrog_989	42.7	0.0000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0017061_55	1449343.JQLQ01000002_gene672	47.4	0.00000217	N/A	N/A
KOfam	UHGV-0017061_56	K07729	46.3	0.00000000000081	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0017061_56	phrog_3	42.4	0.000000000025	transcriptional repressor	transcription regulation
UniRef90	UHGV-0017061_56	UniRef90_UPI00177C904A	79.0	6.38e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0017061_56	1321784.HMPREF1987_01097	52.8	0.0000000356	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0017061_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017061_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0017061_57	phrog_2967	59.1	7.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017061_57	UniRef90_A0A410PX63	107.0	1.95e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0017061_57	1111454.HMPREF1250_0782	102.0	1.36e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0017061_57	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0017061_57	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0017061_57	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0017061_58	K02342	180.8	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0017061_58	phrog_192	176.8	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017061_58	UniRef90_R5A0N0	528.0	0	DNA polymerase III epsilon subunit	N/A
eggNOG-mapper	UHGV-0017061_58	1232449.BAHV02000018_gene1555	227.0	0	EXOIII	N/A
PADLOC	UHGV-0017061_58	cd06127	133.1	2.8e-39	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0017061_58	PF05154	N/A	N/A	TM2 domain	TM2
Pfam	UHGV-0017061_58	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0017061_58	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0017061_58	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
structural_annotation	UHGV-0017061_58	PF00929,MF_00045,NF004964,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-0017061_59	phrog_87	41.3	0.000000000016	metallo-protease	other
UniRef90	UHGV-0017061_59	UniRef90_R5AAT8	187.0	0	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-0017061_59	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0017061_59	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0017061_60	K14623	308.2	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0017061_60	phrog_8036	307.5	0	N/A	unknown function
UniRef90	UHGV-0017061_60	UniRef90_R7P4T0	363.0	0	DNA-damage-inducible protein	N/A
eggNOG-mapper	UHGV-0017061_60	1514668.JOOA01000001_gene65	276.0	0	BRO family, N-terminal domain	N/A
AcrCatalog	UHGV-0017061_60	cluster_17589	158.0	0	NA	N/A
PADLOC	UHGV-0017061_60	Specificity_I_00032	288.9	0	Type I specificity subunit	RM
Pfam	UHGV-0017061_60	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0017061_60	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0017061_60	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0017061_60	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0017061_61	K14059	175.8	0	int; integrase	N/A
PHROG	UHGV-0017061_61	phrog_1	161.2	0	integrase	integration and excision
UniRef90	UHGV-0017061_61	UniRef90_R5A639	648.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0017061_61	764291.STRUR_2196	103.0	1.01e-21	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0017061_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017061_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0017061_61	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017061	Yes	36,033	28	96	1
UHGV-0026500	No	28,605	28	76	1