vOTU vOTU-060050

vOTU: vOTU-060050

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060050
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-510 → CAG-510 sp000434615
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00342 → vGENUS-15811 → vSUBGEN-27907 → vOTU-060050
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-510 → CAG-510 sp000434615
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0002942
Biosample ID	SAMEA4766198
Genome length (bp)	30,688 bps
CheckV completeness	90.88% (High-quality)
CDS count	46
CDS density	92.18%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-510 → CAG-510 sp000434615	Total connections	97	Host agreement	83.51
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-510 → CAG-510 sp000434615	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0002942_2	K22300	70.8	2.9e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0002942_2	phrog_4	59.4	8.6e-17	transcriptional repressor	transcription regulation
UniRef90	UHGV-0002942_2	UniRef90_A0A6N7W070	187.0	0	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0002942_2	641107.CDLVIII_1309	120.0	1.8e-33	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0002942_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0002942_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0002942_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002942_4	PF21662,NF038384,TIGR03090	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_6	phrog_2044	98.7	2.6e-29	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0002942_6	1123511.KB905868_gene195	75.9	4.7e-17	N/A	N/A
structural_annotation	UHGV-0002942_6	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_7	phrog_1891	179.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002942_7	UniRef90_A0A1G5CNK8	176.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0002942_7	293826.Amet_2599	171.0	0	HNH endonuclease	N/A
Pfam	UHGV-0002942_7	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0002942_7	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_10	phrog_625	62.7	4.5e-18	N/A	unknown function
UniRef90	UHGV-0002942_10	UniRef90_A0A395V9H0	148.0	5.46506e-44	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0002942_10	397290.C810_01502	125.0	7.96e-36	N/A	N/A
structural_annotation	UHGV-0002942_10	PF12961	N/A	N/A	N/A	N/A
KOfam	UHGV-0002942_12	K03111	70.5	2.6e-21	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0002942_12	phrog_26861	131.9	3.3e-39	N/A	unknown function
UniRef90	UHGV-0002942_12	UniRef90_A0A6N7WGM1	270.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0002942_12	1121335.Clst_1307	104.0	4.96e-25	PFAM single-strand binding protein	N/A
Pfam	UHGV-0002942_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0002942_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0002942_12	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_14	phrog_3584	211.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0002942_14	411470.RUMGNA_02047	325.0	0	N/A	N/A
structural_annotation	UHGV-0002942_14	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_15	phrog_824	127.1	6.7e-38	N/A	unknown function
UniRef90	UHGV-0002942_15	UniRef90_A0A6N7W260	281.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0002942_15	411470.RUMGNA_02049	155.0	0	VRR-NUC domain	N/A
Pfam	UHGV-0002942_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0002942_16	K03496	196.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0002942_16	phrog_164	160.8	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002942_16	UniRef90_A0A6N7W8U8	436.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0002942_16	610130.Closa_0717	248.0	0	AAA domain	N/A
Pfam	UHGV-0002942_16	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0002942_16	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0002942_16	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0002942_17	K03497	51.6	0.00000000000002	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0002942_17	phrog_15982	223.3	0	N/A	unknown function
UniRef90	UHGV-0002942_17	UniRef90_A0A6N7WQC9	647.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0002942_17	397290.C810_00410	295.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0002942_17	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0002942_17	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0002942_17	PF02195,PF07506,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0002942_22	K03111	90.8	2.5e-26	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0002942_22	phrog_44	109.7	3e-32	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002942_22	UniRef90_A0A6N7WLU2	198.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0002942_22	411470.RUMGNA_02057	176.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0002942_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0002942_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0002942_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0002942_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_23	phrog_1558	135.5	2.29999e-40	N/A	unknown function
UniRef90	UHGV-0002942_23	UniRef90_UPI001EE9266C	144.0	1.92999e-40	sigma-70 region 4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002942_23	411470.RUMGNA_02058	213.0	0	N/A	N/A
structural_annotation	UHGV-0002942_23	PF08281,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0002942_24	K07451	40.6	0.000000000043	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0002942_24	phrog_119	65.7	6.6e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002942_24	UniRef90_A0A6N7W8S4	180.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0002942_24	397290.C810_00416	145.0	5.1848e-44	HNH endonuclease	N/A
Pfam	UHGV-0002942_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0002942_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0002942_25	phrog_1066	107.9	6e-32	N/A	unknown function
eggNOG-mapper	UHGV-0002942_25	397290.C810_00417	148.0	1.12104e-44	N/A	N/A
structural_annotation	UHGV-0002942_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_26	phrog_9	355.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0002942_26	UniRef90_A0A6N7W8T4	1041.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0002942_26	411470.RUMGNA_02062	877.0	0	N/A	N/A
Pfam	UHGV-0002942_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0002942_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0002942_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0002942_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_27	phrog_12	90.2	1.7e-26	portal protein	head and packaging
UniRef90	UHGV-0002942_27	UniRef90_A0A6N7WQB7	696.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0002942_27	397290.C810_00419	568.0	0	Phage portal protein	N/A
Pfam	UHGV-0002942_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0002942_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0002942_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0002942_28	K06904	88.0	1.3e-25	N/A	N/A
PHROG	UHGV-0002942_28	phrog_80	110.6	2.2e-32	head maturation protease	head and packaging
UniRef90	UHGV-0002942_28	UniRef90_A0A6N7WM98	369.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0002942_28	397290.C810_00420	264.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0002942_28	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0002942_28	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0002942_28	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_29	phrog_10	211.4	0	major head protein	head and packaging
UniRef90	UHGV-0002942_29	UniRef90_A0A6N7W8S7	728.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0002942_29	397290.C810_00421	531.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0002942_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0002942_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0002942_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0002942_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_30	phrog_5223	102.5	1.6e-30	neck protein	connector
UniRef90	UHGV-0002942_30	UniRef90_A0A6N7WPD3	208.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0002942_30	411470.RUMGNA_02067	127.0	2.12e-36	N/A	N/A
PHROG	UHGV-0002942_31	phrog_1951	106.5	1.1e-31	head-tail adaptor	connector
UniRef90	UHGV-0002942_31	UniRef90_A0A6N7WPN6	219.0	0	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0002942_31	411470.RUMGNA_02070	108.0	4.56e-29	N/A	N/A
NCBIFam	UHGV-0002942_31	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0002942_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002942_32	UniRef90_R9KQ46	198.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0002942_32	397290.C810_00425	198.0	0	N/A	N/A
structural_annotation	UHGV-0002942_32	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002942_33	411470.RUMGNA_02072	107.0	8.44e-29	N/A	N/A
structural_annotation	UHGV-0002942_33	PF05657,NF040576,COG3978	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_34	phrog_88	151.0	5.60519e-45	major tail protein	tail
UniRef90	UHGV-0002942_34	UniRef90_A0A6N7W8R8	330.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0002942_34	397290.C810_00427	230.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0002942_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0002942_34	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_35	phrog_2115	75.0	9.5e-22	tail protein	tail
eggNOG-mapper	UHGV-0002942_35	397290.C810_00428	142.0	8.31951e-42	N/A	N/A
structural_annotation	UHGV-0002942_35	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_36	phrog_6900	272.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0002942_36	411470.RUMGNA_02076	336.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0002942_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0002942_37	phrog_36410	146.7	4.34403e-44	N/A	unknown function
UniRef90	UHGV-0002942_37	UniRef90_A0A6N7WM83	540.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0002942_37	411470.RUMGNA_02077	357.0	0	COG NOG18823 non supervised orthologous group	N/A
Pfam	UHGV-0002942_37	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0002942_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0002942_37	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_38	phrog_538	198.2	0	minor tail protein	tail
UniRef90	UHGV-0002942_38	UniRef90_UPI001111490C	402.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0002942_38	397290.C810_00431	400.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0002942_38	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0002942_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_39	phrog_1220	263.1	0	head protein	head and packaging
UniRef90	UHGV-0002942_39	UniRef90_A0A098AU84	186.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0002942_39	431943.CKL_4054	182.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0002942_39	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_42	phrog_134	56.6	3.3e-16	N/A	unknown function
UniRef90	UHGV-0002942_42	UniRef90_A0A6L6L8A0	74.7	1e-16	XkdX family protein	N/A
eggNOG-mapper	UHGV-0002942_42	1298920.KI911353_gene543	65.1	0.000000000000103	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0002942_42	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0002942_42	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0002942_43	phrog_199	57.2	2.2e-16	holin	lysis
UniRef90	UHGV-0002942_43	UniRef90_A0A6N7WQE2	259.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0002942_43	411470.RUMGNA_02086	176.0	0	N/A	N/A
Pfam	UHGV-0002942_43	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0002942_43	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0002942_43	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-0002942_44	K01448	95.4	6.1e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0002942_44	phrog_12727	157.2	0	endolysin	lysis
UniRef90	UHGV-0002942_44	UniRef90_A0A6N7W8R7	822.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0002942_44	665950.HMPREF1025_02673	214.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0002942_44	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0002942_44	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0002942_44	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0002942_44	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0002942_44	PF01832,PF01510,PF18342,NF038016,NF041850,COG1705,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0002942_46	K03658	44.1	0.0000000000011	helD; DNA helicase IV [EC:5.6.2.4]	N/A
UniRef90	UHGV-0002942_46	UniRef90_R5CJP9	263.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0002942_46	1280682.AUKA01000002_gene764	254.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-0002942_46	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0002942	Yes	30,688	45	91	1
UHGV-0001441	No	30,688	45	91	1
UHGV-0012872	No	30,648	45	91	1