vOTU vOTU-060141

vOTU: vOTU-060141

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060141
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00520 → vGENUS-00507 → vSUBGEN-35500 → vOTU-060141
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0036617
Biosample ID	N/A
Genome length (bp)	39,691 bps
CheckV completeness	99.90% (High-quality)
CDS count	60
CDS density	89.24%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	16	Host agreement	75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → MGYG000003978	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0036617_1	phrog_15773	41.6	2.4e-22	N/A	unknown function
Pfam	UHGV-0036617_1	PF06692	N/A	N/A	Melon necrotic spot virus P7B protein	MNSV_P7B
PHROG	UHGV-0036617_2	phrog_1770	100.4	1.7e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036617_2	UniRef90_A0A1L8CM45	99.4	8.19e-24	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0036617_2	994601.G9BW80_9CAUD	95.5	5.26e-23	nucleic acid binding	N/A
structural_annotation	UHGV-0036617_2	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_3	phrog_2562	108.9	6.4e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036617_3	UniRef90_A0A2Z4Q9Z3	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036617_3	290402.Cbei_1623	141.0	6.69e-38	N/A	N/A
Pfam	UHGV-0036617_3	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0036617_3	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0036617_3	PF14297,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036617_4	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_6	phrog_561	129.7	7.1e-39	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036617_6	UniRef90_A0A174RC35	228.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0036617_6	33035.JPJF01000071_gene4462	156.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0036617_6	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0036617_6	PF03837,TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_8	phrog_298	81.1	3.4e-24	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036617_8	UniRef90_A0A1C5T0L2	89.4	1.5e-18	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0036617_8	1218075.BAYA01000003_gene606	78.2	0.00000000000000374	N/A	N/A
structural_annotation	UHGV-0036617_8	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036617_12	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0036617_13	K22300	53.3	0.0000000000000064	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0036617_13	phrog_7241	41.3	0.000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036617_13	UniRef90_A0A644YPM1	63.2	0.0000000000135	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0036617_13	411467.BACCAP_02820	49.7	0.00000731	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0036617_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036617_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0036617_18	K22300	43.0	0.0000000000086	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0036617_18	phrog_8	70.0	4.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036617_18	UniRef90_A0A8J6PFI8	81.6	8.59e-18	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0036617_18	1378168.N510_01712	78.2	4.8e-16	N/A	N/A
Pfam	UHGV-0036617_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0036617_18	NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0036617_19	K14059	97.1	2.6e-28	int; integrase	N/A
PHROG	UHGV-0036617_19	phrog_1	92.6	5.4e-27	integrase	integration and excision
UniRef90	UHGV-0036617_19	UniRef90_R6RH38	228.0	0	Prophage LambdaCh01 site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0036617_19	411468.CLOSCI_00325	203.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0036617_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036617_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0036617_19	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036617_20	UniRef90_A0A8F0WD75	72.4	0.00000000000101	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0036617_20	1408437.JNJN01000043_gene801	67.8	0.00000000000997	N/A	N/A
structural_annotation	UHGV-0036617_23	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_26	phrog_15863	153.6	0	N/A	unknown function
UniRef90	UHGV-0036617_26	UniRef90_A0A1Y3R3M0	223.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0036617_26	693746.OBV_01780	175.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0036617_26	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
eggNOG-mapper	UHGV-0036617_28	1504823.CCMM01000008_gene725	45.8	0.00000784	N/A	N/A
structural_annotation	UHGV-0036617_28	PF10723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036617_29	1378168.N510_01472	61.2	0.00000000000269	N/A	N/A
KOfam	UHGV-0036617_30	K06909	121.3	9.7e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036617_30	phrog_979	142.4	2.20004e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0036617_30	UniRef90_A0A1M5YHQ5	489.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0036617_30	693746.OBV_01690	458.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0036617_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0036617_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036617_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_32	phrog_156	92.2	2e-28	portal protein	head and packaging
eggNOG-mapper	UHGV-0036617_32	693746.OBV_01670	536.0	0	N/A	N/A
structural_annotation	UHGV-0036617_32	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_34	phrog_422	117.4	1.1e-34	major head protein	head and packaging
UniRef90	UHGV-0036617_34	UniRef90_A0A8J6JH37	290.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0036617_34	693746.OBV_01700	210.0	0	N/A	N/A
Pfam	UHGV-0036617_34	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0036617_34	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_35	phrog_1863	66.9	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0036617_35	748224.HMPREF9436_01412	99.8	9.48e-27	N/A	N/A
PHROG	UHGV-0036617_36	phrog_1129	62.5	5e-18	holin	lysis
UniRef90	UHGV-0036617_36	UniRef90_A0A0D8J2M2	118.0	6.65e-33	Enolase	N/A
eggNOG-mapper	UHGV-0036617_36	665956.HMPREF1032_03272	116.0	6.26e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0036617_36	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0036617_36	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036617_37	1519439.JPJG01000011_gene57	125.0	8.98e-35	N/A	N/A
structural_annotation	UHGV-0036617_37	PF11650	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036617_38	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_39	phrog_5107	41.1	0.000000000014	amidase	lysis
UniRef90	UHGV-0036617_39	UniRef90_A0A4D7ASB8	507.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036617_39	1519439.JPJG01000011_gene54	513.0	0	N/A	N/A
structural_annotation	UHGV-0036617_39	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_40	phrog_892	54.0	2.8e-27	tail fiber protein	tail
eggNOG-mapper	UHGV-0036617_40	1408422.JHYF01000026_gene3527	85.1	2.2e-17	nuclear chromosome segregation	N/A
COG	UHGV-0036617_40	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0036617_41	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_44	phrog_30034	112.6	4.2e-33	N/A	unknown function
UniRef90	UHGV-0036617_44	UniRef90_A0A2Y9CAD1	149.0	5.74532e-44	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0036617_44	411460.RUMTOR_02099	127.0	1.02e-34	N/A	N/A
Pfam	UHGV-0036617_44	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0036617_44	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_45	phrog_20388	89.5	3.6e-26	endolysin	lysis
UniRef90	UHGV-0036617_45	UniRef90_UPI00189D4A1D	96.3	2.46e-20	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0036617_45	1203606.HMPREF1526_00253	104.0	8.67e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0036617_45	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0036617_45	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0036617_45	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0036617_45	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036617_46	693746.OBV_01600	57.0	0.00000374	N/A	N/A
UniRef90	UHGV-0036617_47	UniRef90_A0A810QFN4	483.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036617_47	693746.OBV_01590	327.0	0	N/A	N/A
Pfam	UHGV-0036617_47	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0036617_48	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
eggNOG-mapper	UHGV-0036617_50	1121405.dsmv_2591	57.8	0.0000000295	N/A	N/A
KOfam	UHGV-0036617_51	K01520	165.6	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0036617_51	phrog_135	131.8	3.6e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036617_51	UniRef90_UPI001873736C	192.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0036617_51	1282887.AUJG01000016_gene1113	158.0	0	N/A	N/A
Pfam	UHGV-0036617_51	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0036617_51	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0036617_51	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0036617_51	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0036617_52	K03091	86.0	6.6e-25	sigH; RNA polymerase sporulation-specific sigma factor	N/A
Pfam	UHGV-0036617_52	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0036617_52	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0036617_52	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0036617_52	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0036617_52	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0036617_56	phrog_22543	40.8	0.000000000032	N/A	unknown function
eggNOG-mapper	UHGV-0036617_59	749222.Nitsa_1823	82.8	0.00000000000000221	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0036617_59	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
dbAPIS	UHGV-0036617_60	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0036617	Yes	39,691	53	100	1