vOTU vOTU-060169

vOTU: vOTU-060169

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060169
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00132 → vSUBFAM-00871 → vGENUS-00763 → vSUBGEN-03039 → vOTU-060169
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0207089
Biosample ID	SAMN10290180
Genome length (bp)	40,670 bps
CheckV completeness	95.59% (High-quality)
CDS count	66
CDS density	91.15%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae	Total connections	19	Host agreement	73.68
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0207089_3	UniRef90_A0A6N7WVF3	54.3	0.00000126	Restriction endonuclease subunit S	N/A
PHROG	UHGV-0207089_4	phrog_5968	163.6	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207089_4	UniRef90_A0A1S8PH11	206.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0207089_4	457412.RSAG_04664	140.0	1.1e-38	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-0207089_4	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0207089_4	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0207089_4	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0207089_7	K03111	51.4	0.000000000000025	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0207089_7	phrog_44	56.4	7.1e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207089_7	UniRef90_A0A6G7Y1U6	59.7	0.00000000929	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0207089_7	406818.XBJ1_3380	57.0	0.0000000318	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0207089_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0207089_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0207089_7	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0207089_8	K01160	52.0	0.000000000000019	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0207089_8	phrog_1682	67.1	2.8e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207089_8	UniRef90_F8J189	100.0	6.6e-25	Putative Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0207089_8	508419.F8J189_9CAUD	100.0	1.11e-25	magnesium ion binding	N/A
Pfam	UHGV-0207089_8	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0207089_8	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_9	phrog_1389	43.4	0.0000000000052	N/A	unknown function
eggNOG-mapper	UHGV-0207089_9	1347392.CCEZ01000060_gene3269	56.6	0.00000000879	N/A	N/A
structural_annotation	UHGV-0207089_9	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_10	phrog_7566	72.0	6.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0207089_10	508419.F8J187_9CAUD	64.3	0.00000000000338	N/A	N/A
KOfam	UHGV-0207089_11	K16898	40.9	0.000000000014	addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]	N/A
PHROG	UHGV-0207089_11	phrog_298	81.9	4.3e-24	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207089_11	UniRef90_A0A3D5XTJ3	119.0	4.39e-30	Cas_Cas4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0207089_11	1399942.U3PDT7_9CAUD	92.8	1.4e-20	nuclease activity	N/A
Pfam	UHGV-0207089_11	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-0207089_11	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_12	phrog_6244	79.6	4.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0207089_12	1399942.U3PIX9_9CAUD	52.8	0.000000179	N/A	N/A
structural_annotation	UHGV-0207089_12	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_13	phrog_155	76.5	4.1e-22	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207089_13	UniRef90_UPI001E498420	115.0	2.24e-28	ERF family protein	N/A
eggNOG-mapper	UHGV-0207089_13	318464.IO99_00460	97.1	3.54e-22	ERF superfamily	N/A
Pfam	UHGV-0207089_13	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0207089_13	PF04404	N/A	N/A	N/A	N/A
Pfam	UHGV-0207089_15	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
UniRef90	UHGV-0207089_16	UniRef90_UPI00192C10ED	56.2	0.0000000123	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0207089_16	PF05339	N/A	N/A	N/A	DUF739
KOfam	UHGV-0207089_17	K22300	68.9	1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0207089_17	phrog_8	67.2	3.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0207089_17	UniRef90_UPI0007C5307C	69.3	0.000000000000178	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0207089_17	1000569.HMPREF1040_0380	57.0	0.0000000273	Peptidase S24-like	N/A
PADLOC	UHGV-0207089_17	retron_type_VI_hth_cluster2_1	41.5	0.000000000037	N/A	Retron
Pfam	UHGV-0207089_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0207089_17	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0207089_18	K14059	177.0	0	int; integrase	N/A
PHROG	UHGV-0207089_18	phrog_1	161.4	0	integrase	integration and excision
UniRef90	UHGV-0207089_18	UniRef90_UPI00189AE8E1	222.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0207089_18	1123263.AUKY01000072_gene2117	130.0	1.32e-31	Phage integrase family	N/A
Pfam	UHGV-0207089_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0207089_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0207089_18	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_20	phrog_5073	44.5	0.000000000002	tail fiber protein	tail
Pfam	UHGV-0207089_20	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0207089_21	K16628	66.5	6.1e-20	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0207089_21	phrog_819	97.2	4.9e-36	tail protein	tail
eggNOG-mapper	UHGV-0207089_21	290402.Cbei_3387	91.3	3.09e-19	N/A	N/A
Pfam	UHGV-0207089_21	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0207089_22	K23619	53.6	0.0000000000000012	COL28A; collagen type XXVIII alpha	N/A
PHROG	UHGV-0207089_22	phrog_819	51.1	0.000000000000016	tail protein	tail
Pfam	UHGV-0207089_22	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0207089_23	PF16640,TIGR04488	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207089_24	871968.DESME_08840	117.0	3.39e-23	N/A	N/A
PHROG	UHGV-0207089_26	phrog_37604	80.7	1.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0207089_26	1232443.BAIA02000078_gene10	77.8	2.74e-16	N/A	N/A
PHROG	UHGV-0207089_27	phrog_881	66.6	2.4e-19	holin	lysis
UniRef90	UHGV-0207089_27	UniRef90_UPI0018A8FD4D	77.0	8.72e-17	phage holin	N/A
eggNOG-mapper	UHGV-0207089_27	1680.BADO_1216	71.6	0.00000000000000212	Putative phage holin Dp-1	N/A
Pfam	UHGV-0207089_27	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0207089_27	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_28	phrog_11037	48.7	0.0000000000001	N/A	unknown function
UniRef90	UHGV-0207089_28	UniRef90_A0A2V2EB84	91.7	2.16e-18	EF-hand domain-containing protein	N/A
eggNOG-mapper	UHGV-0207089_28	428127.EUBDOL_01569	78.6	0.0000000000000475	N/A	N/A
structural_annotation	UHGV-0207089_28	PF08460,PF01551,NF040883,NF033202,COG0739,COG4991	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0207089_29	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0207089_29	NF040910	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207089_30	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_31	phrog_24267	79.1	6.5e-23	N/A	unknown function
UniRef90	UHGV-0207089_31	UniRef90_R5LPM8	82.0	3.92e-17	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-0207089_31	1123302.KB904167_gene530	84.3	8.67e-17	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0207089_31	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0207089_31	COG4675	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207089_33	UniRef90_A0A847CX66	469.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207089_33	755731.Clo1100_2431	128.0	3.02e-28	N/A	N/A
structural_annotation	UHGV-0207089_33	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207089_34	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_35	phrog_422	106.6	2.4e-31	major head protein	head and packaging
UniRef90	UHGV-0207089_35	UniRef90_UPI00082A3F03	199.0	0	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0207089_35	1408437.JNJN01000001_gene1710	179.0	0	N/A	N/A
structural_annotation	UHGV-0207089_35	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207089_36	755731.Clo1100_2435	63.5	0.00000000855	N/A	N/A
PHROG	UHGV-0207089_37	phrog_156	159.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0207089_37	1408437.JNJN01000001_gene1708	336.0	0	N/A	N/A
structural_annotation	UHGV-0207089_37	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0207089_39	K21523	66.8	1.1e-20	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0207089_39	phrog_2	96.7	3.9e-28	terminase large subunit	head and packaging
UniRef90	UHGV-0207089_39	UniRef90_UPI00189AAAC0	442.0	0	DNA packaging protein	N/A
eggNOG-mapper	UHGV-0207089_39	693746.OBV_23980	422.0	0	phage Terminase large subunit	N/A
COG	UHGV-0207089_39	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0207089_39	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0207089_40	phrog_606	48.3	0.000000000000019	terminase small subunit	head and packaging
Pfam	UHGV-0207089_40	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
eggNOG-mapper	UHGV-0207089_43	97139.C824_00043	61.2	0.0000000000629	N/A	N/A
PHROG	UHGV-0207089_44	phrog_7245	111.7	5.2e-33	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0207089_44	UniRef90_A0A416JQF5	128.0	4.91e-30	N/A	N/A
eggNOG-mapper	UHGV-0207089_44	97139.C824_00155	130.0	1.9e-31	N/A	N/A
Pfam	UHGV-0207089_44	PF08401	N/A	N/A	N-terminal domain of anti-restriction factor ArdC	ArdcN
Pfam	UHGV-0207089_44	PF18818	N/A	N/A	Zincin-like metallopeptidase	MPTase-PolyVal
COG	UHGV-0207089_44	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
structural_annotation	UHGV-0207089_44	PF18818,PF08401,COG4227	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0207089	Yes	40,670	39	96	1
UHGV-1595551	No	16,661	41	39	1
UHGV-0063543	No	13,120	41	31	1
UHGV-1721016	No	13,120	41	31	1