vOTU vOTU-060222

vOTU: vOTU-060222

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060222
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00604 → vGENUS-17952 → vSUBGEN-33722 → vOTU-060222
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-628
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0018834
Biosample ID	SAMEA4765999
Genome length (bp)	36,506 bps
CheckV completeness	97.34% (High-quality)
CDS count	66
CDS density	93.42%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-628	Total connections	4	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0018834_1	K06400	336.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0018834_1	phrog_95	322.5	0	integrase	integration and excision
UniRef90	UHGV-0018834_1	UniRef90_UPI001BAD55EF	348.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0018834_1	537013.CLOSTMETH_01697	340.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0018834_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0018834_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0018834_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0018834_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0018834_1	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0018834_2	K14623	115.0	9.9e-34	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0018834_2	phrog_15286	306.0	0	N/A	unknown function
UniRef90	UHGV-0018834_2	UniRef90_A0A351SRQ2	389.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0018834_2	525255.HMPREF0077_0944	286.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0018834_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0018834_2	COG5380	N/A	N/A	Lipase chaperone LimK	N/A
structural_annotation	UHGV-0018834_2	PF09669,NF008573,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_3	phrog_581	53.9	0.000000000000003	minor head protein	head and packaging
eggNOG-mapper	UHGV-0018834_3	1415775.U729_2602	97.4	1.11e-21	Phage minor capsid protein 2	N/A
Pfam	UHGV-0018834_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
KOfam	UHGV-0018834_4	K01356	103.9	2.5e-30	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0018834_4	phrog_4	121.0	1.2e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0018834_4	UniRef90_A0A3D0X8J2	149.0	1.49e-41	LexA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0018834_4	1118055.CAGU01000029_gene53	130.0	3.1e-35	Peptidase S24-like	N/A
Pfam	UHGV-0018834_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0018834_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0018834_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0018834_4	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0018834_5	K07729	55.7	0.0000000000000012	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0018834_5	UniRef90_A0A1Z5IZ68	80.1	2.85e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0018834_5	12360.Q8SDX1_BPPHA	69.7	0.00000000000000632	sequence-specific DNA binding	N/A
Pfam	UHGV-0018834_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0018834_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_7	phrog_9607	88.3	1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0018834_7	1378168.N510_03161	97.4	4.55e-23	N/A	N/A
structural_annotation	UHGV-0018834_7	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_9	phrog_585	106.8	1.7e-31	N/A	unknown function
UniRef90	UHGV-0018834_9	UniRef90_A0A5M8RDL8	110.0	9.06e-29	N/A	N/A
eggNOG-mapper	UHGV-0018834_9	1158602.I590_03003	94.0	4.73e-23	N/A	N/A
Pfam	UHGV-0018834_9	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0018834_9	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_12	phrog_9327	44.4	0.0000000000017	primosomal protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018834_12	UniRef90_A0A7X9QA29	62.4	0.0000000301	N/A	N/A
eggNOG-mapper	UHGV-0018834_12	927704.SELR_18440	76.3	0.000000000000128	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
COG	UHGV-0018834_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0018834_12	PF19808	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018834_16	UniRef90_A0A858BRQ4	232.0	0	N/A	N/A
eggNOG-mapper	UHGV-0018834_16	33035.JPJF01000135_gene5082	190.0	0	N/A	N/A
Pfam	UHGV-0018834_16	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0018834_16	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_17	phrog_434	41.4	0.000000000017	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0018834_17	1462526.BN990_01808	60.5	0.0000000103	N/A	N/A
Pfam	UHGV-0018834_17	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0018834_17	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_18	phrog_72	62.5	8e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0018834_18	1304866.K413DRAFT_1197	61.2	0.00000000147	N/A	N/A
structural_annotation	UHGV-0018834_18	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_20	phrog_7545	87.6	4.9e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018834_20	UniRef90_R7BGM2	161.0	0	Gp148	N/A
eggNOG-mapper	UHGV-0018834_20	1052673.G1FGL3_9CAUD	76.3	0.0000000000000083	HNH endonuclease	N/A
Pfam	UHGV-0018834_20	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
Pfam	UHGV-0018834_20	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0018834_20	PF13392,PF13384,TIGR04381,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0018834_21	K03111	107.2	2.7e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0018834_21	phrog_44	115.7	4.8e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018834_21	UniRef90_A0A350H2L8	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0018834_21	345219.Bcoa_1304	119.0	5.94e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0018834_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0018834_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0018834_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0018834_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0018834_21	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018834_24	PF20384,COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_25	phrog_478	133.9	5.70001e-40	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-0018834_25	324057.Pjdr2_1537	111.0	7.98e-30	N/A	N/A
structural_annotation	UHGV-0018834_27	NF038044	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_30	phrog_803	50.2	0.000000000000054	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0018834_30	UniRef90_B0YL92	59.3	0.000000000187	Orf42	N/A
eggNOG-mapper	UHGV-0018834_30	1145276.T479_16305	70.9	8.35e-16	N/A	N/A
PHROG	UHGV-0018834_31	phrog_625	73.7	1.8e-21	N/A	unknown function
UniRef90	UHGV-0018834_31	UniRef90_A0A3E3EHP8	117.0	6.32e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0018834_31	397290.C810_01502	94.7	9.65e-24	N/A	N/A
structural_annotation	UHGV-0018834_31	PF12961,NF003443,COG2947	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_32	phrog_11947	46.3	0.00000000000069	N/A	unknown function
structural_annotation	UHGV-0018834_33	PF10654	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018834_35	PF15456	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018834_36	PF17790,NF011770	N/A	N/A	N/A	N/A
Pfam	UHGV-0018834_37	PF03382	N/A	N/A	N/A	DUF285
NCBIFam	UHGV-0018834_37	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-0018834_37	PF03382	N/A	N/A	N/A	N/A
KOfam	UHGV-0018834_39	K07474	115.2	1.2e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0018834_39	phrog_51	129.8	1.9e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0018834_39	UniRef90_A0A350H3S5	215.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0018834_39	536232.CLM_2664	111.0	2.93e-28	Terminase small subunit	N/A
Pfam	UHGV-0018834_39	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0018834_39	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0018834_39	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018834_40	UniRef90_R5A0K2	961.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0018834_40	645991.Sgly_0335	476.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0018834_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0018834_40	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_41	phrog_533	243.2	0	portal protein	head and packaging
UniRef90	UHGV-0018834_41	UniRef90_R5A3Z5	933.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0018834_41	1117108.PAALTS15_13582	429.0	0	N/A	N/A
structural_annotation	UHGV-0018834_41	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_43	phrog_581	120.7	0	minor head protein	head and packaging
UniRef90	UHGV-0018834_43	UniRef90_R5A5Z0	647.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0018834_43	1151292.QEW_4396	285.0	0	COG3209 Rhs family protein	N/A
Pfam	UHGV-0018834_43	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0018834_43	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0018834_43	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018834_43	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_46	phrog_2303	80.8	2.5e-23	head scaffolding protein	head and packaging
structural_annotation	UHGV-0018834_46	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_47	phrog_422	231.4	0	major head protein	head and packaging
UniRef90	UHGV-0018834_47	UniRef90_W0U896	383.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0018834_47	1160721.RBI_II00538	383.0	0	N/A	N/A
structural_annotation	UHGV-0018834_47	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_50	phrog_541	100.2	1.5e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0018834_50	1151292.QEW_2431	88.2	8.2e-21	N/A	N/A
PHROG	UHGV-0018834_51	phrog_8710	120.8	5.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-0018834_51	1304866.K413DRAFT_0782	80.5	4.43e-18	N/A	N/A
structural_annotation	UHGV-0018834_51	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_52	phrog_556	65.5	8.1e-19	minor head protein	head and packaging
UniRef90	UHGV-0018834_52	UniRef90_UPI00058FDD53	106.0	2.83e-27	minor capsid protein	N/A
eggNOG-mapper	UHGV-0018834_52	742740.HMPREF9474_03509	105.0	9.27e-28	N/A	N/A
PHROG	UHGV-0018834_53	phrog_2595	62.2	8.8e-18	head-tail connector protein	connector
UniRef90	UHGV-0018834_53	UniRef90_UPI0016BCEC89	92.4	1.41e-21	minor capsid protein	N/A
eggNOG-mapper	UHGV-0018834_53	1151292.QEW_2427	95.5	1.47e-23	N/A	N/A
Pfam	UHGV-0018834_53	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0018834_53	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_54	phrog_820	80.4	2.1e-23	major tail protein	tail
eggNOG-mapper	UHGV-0018834_54	1282664.H354_06691	109.0	1.6e-28	N/A	N/A
Pfam	UHGV-0018834_54	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
structural_annotation	UHGV-0018834_54	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_55	phrog_8300	74.0	1.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0018834_55	1507.HMPREF0262_01185	53.1	0.000000144	N/A	N/A
structural_annotation	UHGV-0018834_55	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_56	phrog_991	109.9	9.6e-36	tail length tape measure protein	tail
UniRef90	UHGV-0018834_56	UniRef90_R5A122	587.0	0	ETS domain-containing protein	N/A
eggNOG-mapper	UHGV-0018834_56	645991.Sgly_0352	259.0	0	SLT domain	N/A
COG	UHGV-0018834_56	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0018834_56	PF06791,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_57	phrog_1194	43.6	0.0000000000049	N/A	unknown function
structural_annotation	UHGV-0018834_57	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_58	phrog_6616	61.4	9.6e-18	tail protein	tail
eggNOG-mapper	UHGV-0018834_58	469596.HMPREF9488_01330	82.8	0.000000000000128	N/A	N/A
structural_annotation	UHGV-0018834_58	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0018834_59	phrog_372	153.5	1.4013e-45	tail protein	tail
UniRef90	UHGV-0018834_59	UniRef90_UPI0002BB22B5	71.6	0.0000000016	N/A	N/A
eggNOG-mapper	UHGV-0018834_59	1211844.CBLM010000016_gene1479	67.8	0.00000000337	N/A	N/A
Pfam	UHGV-0018834_59	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0018834_59	PF05895,MF_04116,NF010681,COG3291,COG2967	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018834_65	UniRef90_R7MHG2	77.0	0.000000000000187	Peptidoglycan DL-endopeptidase CwlO	N/A
eggNOG-mapper	UHGV-0018834_65	28042.GU90_10165	58.9	0.000000176	PFAM Peptidase family M23	N/A
COG	UHGV-0018834_65	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0018834_66	phrog_7566	54.7	0.0000000000000019	N/A	unknown function
UniRef90	UHGV-0018834_66	UniRef90_UPI000E542A38	67.8	0.00000000000494	phosphoenolpyruvate carboxykinase	N/A
Pfam	UHGV-0018834_66	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0018834	Yes	36,506	28	97	1