vOTU vOTU-060355

vOTU: vOTU-060355

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060355
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00143 → vGENUS-00097 → vSUBGEN-00058 → vOTU-060355
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0157820
Biosample ID	N/A
Genome length (bp)	39,928 bps
CheckV completeness	99.90% (High-quality)
CDS count	56
CDS density	93.15%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	117	Host agreement	81.2
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Absicoccus → Absicoccus sp000434355	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0157820_1	phrog_9605	54.4	0.0000000000000021	N/A	unknown function
UniRef90	UHGV-0157820_1	UniRef90_R5Z4C3	77.0	8.1e-18	PF12358 family protein	N/A
eggNOG-mapper	UHGV-0157820_1	1054460.SPPN_11080	67.8	0.000000000000631	N/A	N/A
Pfam	UHGV-0157820_1	PF12358	N/A	N/A	N/A	DUF3644
PHROG	UHGV-0157820_2	phrog_9605	279.6	0	N/A	unknown function
UniRef90	UHGV-0157820_2	UniRef90_R5ZD98	525.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157820_2	862971.SANR_1133	388.0	0	N/A	N/A
Pfam	UHGV-0157820_2	PF12358	N/A	N/A	N/A	DUF3644
Pfam	UHGV-0157820_2	PF18740	N/A	N/A	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
structural_annotation	UHGV-0157820_2	PF12358,COG1895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157820_6	PF19824,TIGR03090	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_7	phrog_1863	40.3	0.000000000024	N/A	unknown function
PHROG	UHGV-0157820_8	phrog_443	60.7	4.5e-17	holin	lysis
UniRef90	UHGV-0157820_8	UniRef90_UPI001896A9B9	131.0	7.66e-39	holin	N/A
eggNOG-mapper	UHGV-0157820_8	1125712.HMPREF1316_2355	77.4	4.49e-18	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0157820_8	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0157820_8	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157820_9	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_10	phrog_16490	43.7	0.00000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0157820_10	1235790.C805_00060	57.4	0.000000305	N/A	N/A
PHROG	UHGV-0157820_11	phrog_22984	57.0	3.9e-16	N/A	unknown function
PHROG	UHGV-0157820_12	phrog_21718	54.7	0.0000000000000017	N/A	unknown function
UniRef90	UHGV-0157820_12	UniRef90_A0A8D9PDT7	52.4	0.00000168	Membrane fusogenic activity protein	N/A
eggNOG-mapper	UHGV-0157820_12	476272.RUMHYD_01768	53.5	0.000000325	N/A	N/A
PHROG	UHGV-0157820_14	phrog_11037	79.2	5.3e-23	N/A	unknown function
UniRef90	UHGV-0157820_14	UniRef90_UPI001D0AE32A	575.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0157820_14	428127.EUBDOL_01569	278.0	0	N/A	N/A
Pfam	UHGV-0157820_14	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
structural_annotation	UHGV-0157820_14	PF08460,PF01551,NF040883,NF033202,COG0739,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_16	phrog_19280	73.9	1.8e-21	N/A	unknown function
UniRef90	UHGV-0157820_16	UniRef90_A0A413UF00	667.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157820_16	1160721.RBI_I01569	118.0	1.3e-26	N/A	N/A
Pfam	UHGV-0157820_16	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0157820_16	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_19	phrog_31	50.5	0.000000000000017	baseplate hub protein Tal	tail
UniRef90	UHGV-0157820_19	UniRef90_UPI001D0A6980	367.0	0	fibronectin type III domain-containing protein	N/A
eggNOG-mapper	UHGV-0157820_19	555500.I215_02753	65.1	0.000000019	Fibronectin type III domain	N/A
Pfam	UHGV-0157820_19	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0157820_19	COG2335	N/A	N/A	Uncaracterized surface protein containing fasciclin (FAS1) repeats	N/A
structural_annotation	UHGV-0157820_19	PF05895,MF_04116,NF010681,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_20	phrog_9534	111.4	1.2e-32	head protein	head and packaging
UniRef90	UHGV-0157820_20	UniRef90_UPI0011598740	67.4	0.00000000168	structural protein	N/A
eggNOG-mapper	UHGV-0157820_20	226185.EF_0351	61.2	0.0000000379	N/A	N/A
structural_annotation	UHGV-0157820_20	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_21	phrog_538	159.0	0	minor tail protein	tail
UniRef90	UHGV-0157820_21	UniRef90_UPI001D0B76DC	491.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0157820_21	1321782.HMPREF1986_02278	118.0	2.02e-27	N/A	N/A
Pfam	UHGV-0157820_21	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0157820_21	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_22	phrog_33	83.1	5.4e-24	distal tail protein Dit	tail
UniRef90	UHGV-0157820_22	UniRef90_UPI001D0AA3C9	443.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0157820_22	428127.EUBDOL_01213	179.0	0	phage tail	N/A
COG	UHGV-0157820_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0157820_22	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_23	phrog_1686	250.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0157820_23	UniRef90_UPI001D0A3DB9	1036.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0157820_23	999413.HMPREF1094_00207	308.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0157820_23	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0157820_23	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0157820_23	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0157820_24	phrog_706	139.7	1.79997e-41	N/A	unknown function
UniRef90	UHGV-0157820_24	UniRef90_UPI001D0AAED0	367.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0157820_24	999413.HMPREF1094_00208	147.0	2.64986e-42	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0157820_24	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0157820_24	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157820_25	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_26	phrog_3099	87.1	2.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0157820_26	632245.CLP_1654	61.6	0.00000000453	N/A	N/A
structural_annotation	UHGV-0157820_26	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157820_27	UniRef90_UPI001D09DA0D	301.0	0	ABC transporter permease	N/A
structural_annotation	UHGV-0157820_27	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_28	phrog_556	50.4	0.000000000000036	minor head protein	head and packaging
UniRef90	UHGV-0157820_28	UniRef90_UPI001D09B824	283.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0157820_28	642492.Clole_0824	65.5	0.0000000000133	Minor capsid protein	N/A
Pfam	UHGV-0157820_28	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0157820_28	PF11114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157820_29	UniRef90_UPI001E2BB5D0	82.8	5.48e-18	minor capsid protein	N/A
structural_annotation	UHGV-0157820_29	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_31	phrog_212	230.3	0	major head protein	head and packaging
UniRef90	UHGV-0157820_31	UniRef90_UPI00189A455D	617.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0157820_31	552396.HMPREF0863_00277	384.0	0	N/A	N/A
structural_annotation	UHGV-0157820_31	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_32	phrog_194	102.3	5.9e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0157820_32	UniRef90_UPI001D0A686C	322.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0157820_32	1232449.BAHV02000010_gene2713	99.0	2.04e-23	N/A	N/A
Pfam	UHGV-0157820_32	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0157820_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_34	phrog_581	280.8	0	minor head protein	head and packaging
UniRef90	UHGV-0157820_34	UniRef90_UPI001D0B3D9B	769.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0157820_34	552396.HMPREF0863_00280	262.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0157820_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0157820_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157820_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_35	phrog_533	255.2	0	portal protein	head and packaging
UniRef90	UHGV-0157820_35	UniRef90_UPI001430A874	572.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0157820_35	552396.HMPREF0863_00281	471.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0157820_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0157820_36	K06909	82.7	5.3e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0157820_36	phrog_2	105.2	1.2e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0157820_36	UniRef90_UPI001D0AA0D4	830.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0157820_36	552396.HMPREF0863_00282	469.0	0	DNA packaging	N/A
Pfam	UHGV-0157820_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0157820_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0157820_36	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_37	phrog_2412	66.6	5e-19	N/A	unknown function
UniRef90	UHGV-0157820_37	UniRef90_UPI000427CABE	59.3	0.0000000359	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0157820_37	1232449.BAHV02000018_gene1532	70.5	0.000000000000501	N/A	N/A
KOfam	UHGV-0157820_38	K07319	131.5	8.4e-39	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0157820_38	phrog_498	450.6	0	DNA methyltransferase	other
UniRef90	UHGV-0157820_38	UniRef90_UPI001D0A8584	872.0	0	DNA modification methylase	N/A
eggNOG-mapper	UHGV-0157820_38	521003.COLINT_02335	432.0	0	DNA methylase	N/A
PADLOC	UHGV-0157820_38	MTase_II_00015	255.0	0	Type II methyltransferase	RM
Pfam	UHGV-0157820_38	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0157820_38	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0157820_38	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0157820_38	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157820_39	TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-0157820_40	K14440	81.1	1.6e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0157820_40	phrog_62	390.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157820_40	UniRef90_UPI001E5F6A13	881.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0157820_40	552396.HMPREF0863_00284	540.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0157820_40	ZorD1_00007	99.3	4.7e-29	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0157820_40	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0157820_40	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0157820_40	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0157820_40	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_41	phrog_93	71.3	1.4e-20	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157820_41	UniRef90_UPI00189BA373	209.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0157820_41	1122146.AUHP01000010_gene1025	94.4	6.88e-24	VRR_NUC	N/A
structural_annotation	UHGV-0157820_41	PF01870,MF_00130,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_43	phrog_2245	72.5	6.4e-21	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0157820_43	UniRef90_A0A373NRP8	59.3	0.00000000547	MazG domain-containing protein	N/A
PHROG	UHGV-0157820_44	phrog_256	976.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157820_44	UniRef90_UPI001D0A1C03	1585.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0157820_44	552396.HMPREF0863_00286	896.0	0	N/A	N/A
Pfam	UHGV-0157820_44	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0157820_44	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0157820_44	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0157820_46	K02334	785.9	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0157820_46	phrog_17	405.6	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157820_46	UniRef90_UPI001D0A031A	1269.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0157820_46	552396.HMPREF0863_00289	601.0	0	DNA polymerase	N/A
Pfam	UHGV-0157820_46	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0157820_46	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0157820_46	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_47	phrog_112	129.2	3.2e-38	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157820_47	UniRef90_UPI0018993946	378.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157820_47	552396.HMPREF0863_00290	149.0	1.02995e-42	N/A	N/A
Pfam	UHGV-0157820_47	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0157820_47	PF10991,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_48	phrog_69	327.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157820_48	UniRef90_UPI001D0AE809	706.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157820_48	1235796.C815_00944	341.0	0	N/A	N/A
Pfam	UHGV-0157820_48	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0157820_48	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0157820_48	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157820_50	NF040990	N/A	N/A	N/A	N/A
KOfam	UHGV-0157820_53	K18830	54.4	0.0000000000000033	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0157820_53	phrog_8	44.6	0.00000000000079	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157820_53	UniRef90_UPI00189831EE	143.0	5.95972e-42	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0157820_53	525254.HMPREF0072_0267	81.6	1.81e-18	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0157820_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157820_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157820_53	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0157820_55	phrog_2967	45.5	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157820_55	UniRef90_UPI001D09EDED	382.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0157820_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157820_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157820_55	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0157820_56	K14059	210.0	0	int; integrase	N/A
PHROG	UHGV-0157820_56	phrog_1	199.7	0	integrase	integration and excision
UniRef90	UHGV-0157820_56	UniRef90_UPI00189BAE2B	488.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0157820_56	1232449.BAHV02000018_gene1556	175.0	0	Site-specific recombinase, phage integrase family	N/A
Pfam	UHGV-0157820_56	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0157820_56	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0157820_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0157820_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0157820_56	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0157820	Yes	39,928	43	100	1