vOTU vOTU-060397

vOTU: vOTU-060397

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060397
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01513 → vGENUS-01525 → vSUBGEN-00871 → vOTU-060397
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → RUG472 → RUG472 sp900545265
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0173787
Biosample ID	SAMN09781790
Genome length (bp)	33,700 bps
CheckV completeness	96.31% (High-quality)
CDS count	58
CDS density	93.38%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → RUG472 → RUG472 sp900545265	Total connections	288	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0173787_4	phrog_924	43.8	0.0000000000038	N/A	unknown function
UniRef90	UHGV-0173787_4	UniRef90_A0A355JDC2	60.1	0.0000000108	N/A	N/A
Pfam	UHGV-0173787_4	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0173787_6	phrog_24658	118.5	3.5e-35	N/A	unknown function
UniRef90	UHGV-0173787_6	UniRef90_R6HTM1	181.0	0	Gp50	N/A
KOfam	UHGV-0173787_7	K01491	145.4	1.12104e-44	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	N/A
PHROG	UHGV-0173787_7	phrog_7320	131.3	2.8e-40	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UniRef90	UHGV-0173787_7	UniRef90_A0A7C6YJZ7	140.0	8.56e-37	Bifunctional protein FolD	N/A
eggNOG-mapper	UHGV-0173787_7	1463864.JOGO01000016_gene4597	127.0	1.12e-32	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	N/A
Pfam	UHGV-0173787_7	PF02882	N/A	N/A	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
COG	UHGV-0173787_7	COG0190	N/A	N/A	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	N/A
structural_annotation	UHGV-0173787_7	PF02882,MF_01576,NF010769,COG0190	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_8	phrog_36	60.4	3.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173787_8	UniRef90_A0A1C6LD55	70.1	0.00000000000124	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0173787_8	1121335.Clst_0383	75.1	0.00000000000000264	N/A	N/A
structural_annotation	UHGV-0173787_8	PF02996	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173787_9	665950.HMPREF1025_02545	62.8	0.0000000000248	DNA methylase	N/A
COG	UHGV-0173787_9	COG0863	N/A	N/A	DNA modification methylase	N/A
KOfam	UHGV-0173787_10	K07319	72.4	7e-21	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0173787_10	phrog_67	69.0	9.2e-20	DNA methyltransferase	other
UniRef90	UHGV-0173787_10	UniRef90_A0A413FXK5	108.0	2.44e-27	Methyltransferase	N/A
eggNOG-mapper	UHGV-0173787_10	1566990.A0A0A0YX44_9CAUD	101.0	3.8e-25	helicase activity	N/A
PADLOC	UHGV-0173787_10	MTase_II_00172	61.1	4.1e-17	Type II methyltransferase	RM
Pfam	UHGV-0173787_10	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0173787_10	PF01170	N/A	N/A	N/A	N/A
KOfam	UHGV-0173787_11	K07451	47.9	0.00000000000027	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0173787_11	phrog_119	85.5	7.1e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173787_11	UniRef90_A0A0D8IV26	125.0	4.98e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0173787_11	1226322.HMPREF1545_00111	113.0	4.59e-32	HNH nucleases	N/A
Pfam	UHGV-0173787_11	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0173787_11	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0173787_11	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_12	phrog_361	63.4	4.2e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0173787_12	UniRef90_A0A1C6H6I9	142.0	1.12006e-41	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0173787_12	1033744.CAEL01000029_gene1286	82.4	1.25e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-0173787_12	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0173787_12	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_13	phrog_9	295.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173787_13	UniRef90_A0A2V2GQ67	1008.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0173787_13	1226322.HMPREF1545_00113	909.0	0	Phage Terminase	N/A
Pfam	UHGV-0173787_13	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0173787_13	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0173787_13	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0173787_13	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_14	phrog_12	182.0	0	portal protein	head and packaging
UniRef90	UHGV-0173787_14	UniRef90_A0A0D8IVL0	579.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0173787_14	1226322.HMPREF1545_00114	479.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0173787_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0173787_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0173787_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0173787_14	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0173787_15	K06904	145.5	4.59626e-43	N/A	N/A
PHROG	UHGV-0173787_15	phrog_80	165.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0173787_15	UniRef90_U2SBX0	291.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0173787_15	1226322.HMPREF1545_00115	291.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0173787_15	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0173787_15	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0173787_15	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0173787_15	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_16	phrog_10	216.9	0	major head protein	head and packaging
UniRef90	UHGV-0173787_16	UniRef90_A0A1C6H720	647.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0173787_16	1226322.HMPREF1545_00116	574.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0173787_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0173787_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0173787_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0173787_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_17	phrog_2550	80.6	1.1e-23	N/A	unknown function
UniRef90	UHGV-0173787_17	UniRef90_R5V091	77.8	7.63e-17	Phage related protein	N/A
eggNOG-mapper	UHGV-0173787_17	1226322.HMPREF1545_00117	92.0	3.06e-23	N/A	N/A
structural_annotation	UHGV-0173787_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_18	phrog_19734	80.7	2.2e-23	N/A	unknown function
UniRef90	UHGV-0173787_18	UniRef90_A0A3R6AW46	97.1	1.01e-23	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0173787_18	1235798.C817_04587	78.6	2.82e-17	N/A	N/A
structural_annotation	UHGV-0173787_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173787_19	1235798.C817_04588	78.2	2.68e-17	N/A	N/A
structural_annotation	UHGV-0173787_19	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_20	phrog_5	46.3	0.00000000000095	tail completion or Neck1 protein	connector
UniRef90	UHGV-0173787_20	UniRef90_R6UNR2	144.0	5.57002e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0173787_20	908340.HMPREF9406_2573	144.0	9.33965e-42	N/A	N/A
structural_annotation	UHGV-0173787_20	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_21	phrog_88	91.4	9.3e-27	major tail protein	tail
NCBIFam	UHGV-0173787_21	TIGR01603.1	N/A	N/A	major tail protein	N/A
KOfam	UHGV-0173787_23	K20478	45.1	0.00000000000021	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0173787_23	phrog_3981	76.2	5.6e-22	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0173787_23	720554.Clocl_3669	230.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0173787_23	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0173787_23	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_24	phrog_33	65.0	2.1e-18	distal tail protein Dit	tail
UniRef90	UHGV-0173787_24	UniRef90_A0A173Z1X4	188.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0173787_24	1123263.AUKY01000068_gene490	107.0	1.28e-25	tail component	N/A
COG	UHGV-0173787_24	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0173787_24	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_25	phrog_1067	210.6	0	minor head protein	head and packaging
UniRef90	UHGV-0173787_25	UniRef90_A0A1C6H6B4	344.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0173787_25	1123263.AUKY01000068_gene489	281.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0173787_25	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0173787_25	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0173787_25	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0173787_25	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_26	phrog_372	164.4	0	tail protein	tail
UniRef90	UHGV-0173787_26	UniRef90_UPI00195FD9F2	100.0	3.13e-18	N/A	N/A
eggNOG-mapper	UHGV-0173787_26	658659.HMPREF0983_03294	127.0	1.68e-28	N/A	N/A
Pfam	UHGV-0173787_26	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0173787_26	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0173787_26	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
KOfam	UHGV-0173787_28	K21471	72.4	1.1e-20	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0173787_28	phrog_329	50.5	0.0000000000000026	minor tail protein	tail
UniRef90	UHGV-0173787_28	UniRef90_A0A316PD96	88.2	1.09e-17	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173787_28	1033740.CAEW01000032_gene2157	58.5	0.000000491	NlpC/P60 family	N/A
Pfam	UHGV-0173787_28	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0173787_28	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0173787_28	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0173787_28	PF00877,PF18342,NF033742,NF041850,COG0791,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_29	phrog_1863	60.0	2.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0173787_29	1235797.C816_02840	108.0	1.51e-29	N/A	N/A
eggNOG-mapper	UHGV-0173787_30	394503.Ccel_1297	52.0	0.000000417	N/A	N/A
eggNOG-mapper	UHGV-0173787_31	1304866.K413DRAFT_4686	69.3	0.00000000000000626	N/A	N/A
PHROG	UHGV-0173787_32	phrog_18108	68.3	1e-19	N/A	unknown function
UniRef90	UHGV-0173787_32	UniRef90_UPI001EF69CCF	65.1	0.00000000315	helix-turn-helix domain-containing protein	N/A
AcrCatalog	UHGV-0173787_32	cluster_115962	61.6	0.000000000000146	NA	N/A
structural_annotation	UHGV-0173787_32	PF07443	N/A	N/A	N/A	N/A
Pfam	UHGV-0173787_34	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0173787_34	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0173787_35	K14059	125.5	7.6e-37	int; integrase	N/A
PHROG	UHGV-0173787_35	phrog_1	123.3	2.8e-36	integrase	integration and excision
UniRef90	UHGV-0173787_35	UniRef90_UPI00030B7B7C	322.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0173787_35	1007096.BAGW01000023_gene159	321.0	0	Phage integrase family	N/A
Pfam	UHGV-0173787_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0173787_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0173787_35	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0173787_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173787_37	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0173787_39	K18830	69.9	5.7e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0173787_39	phrog_4	50.8	0.000000000000041	transcriptional repressor	transcription regulation
UniRef90	UHGV-0173787_39	UniRef90_UPI001A9C6895	129.0	2.25e-36	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0173787_39	903814.ELI_1263	118.0	1.14e-32	Helix-turn-helix domain	N/A
Pfam	UHGV-0173787_39	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0173787_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173787_39	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0173787_40	K22300	53.5	0.000000000000006	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0173787_40	phrog_2967	53.9	0.0000000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173787_40	UniRef90_UPI001EDCF802	127.0	4.03e-35	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0173787_40	748224.HMPREF9436_01444	105.0	5.15e-27	N/A	N/A
Pfam	UHGV-0173787_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173787_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173787_40	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173787_42	PF09202,MF_01177,TIGR01889,COG5631	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173787_45	PF05339,MF_00535,NF002773,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173787_49	UniRef90_UPI000C7BF263	80.9	3.87e-16	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0173787_49	445972.ANACOL_01825	92.4	2.74e-21	N/A	N/A
PHROG	UHGV-0173787_50	phrog_7566	85.3	5.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0173787_50	483218.BACPEC_01171	77.4	4.11e-17	N/A	N/A
KOfam	UHGV-0173787_51	K03111	131.2	1.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0173787_51	phrog_44	124.7	6.7e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173787_51	UniRef90_A0A2N2A191	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0173787_51	1042163.BRLA_c031440	124.0	1.01e-34	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0173787_51	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0173787_51	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0173787_51	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0173787_51	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0173787_51	PF00436,MF_00984,NF006445,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_52	phrog_16304	62.0	1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0173787_52	445972.ANACOL_03338	55.5	0.0000029	DnaD domain protein	N/A
Pfam	UHGV-0173787_52	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0173787_52	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0173787_54	phrog_2245	73.1	4.4e-21	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0173787_54	UniRef90_A0A1E7GWT5	49.7	0.00000864	MazG domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0173787_54	428127.EUBDOL_01514	52.4	0.000000147	N/A	N/A
structural_annotation	UHGV-0173787_54	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0173787_56	phrog_599	45.7	0.0000000000014	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0173787_56	UniRef90_UPI000EF4F8BA	103.0	4.26e-27	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0173787_56	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0173787	Yes	33,700	53	96	1