vOTU vOTU-060424

vOTU: vOTU-060424

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060424
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-02179 → vGENUS-03187 → vSUBGEN-28513 → vOTU-060424
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-611
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0000129
Biosample ID	SAMEA4766166
Genome length (bp)	41,710 bps
CheckV completeness	99.90% (High-quality)
CDS count	64
CDS density	90.60%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-611	Total connections	56	Host agreement	83.93
PHIST-predicted host lineage	Bacteria → Firmicutes	Total connections	5	Host agreement	60

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0000129_1	phrog_7566	70.4	2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0000129_1	508419.F8J187_9CAUD	63.5	0.00000000000549	N/A	N/A
KOfam	UHGV-0000129_2	K19304	107.4	1.6e-31	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0000129_2	phrog_7767	64.8	1.3e-18	metallo-endopeptidase	other
UniRef90	UHGV-0000129_2	UniRef90_A0A7C6RR32	120.0	2.76e-28	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0000129_2	742723.HMPREF9477_01627	62.0	0.0000000633	Peptidase family M23	N/A
Pfam	UHGV-0000129_2	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0000129_2	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
structural_annotation	UHGV-0000129_3	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000129_4	PF07041	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000129_6	PF17790,NF011770	N/A	N/A	N/A	N/A
PHROG	UHGV-0000129_7	phrog_13632	54.3	0.0000000000000028	N/A	unknown function
eggNOG-mapper	UHGV-0000129_7	1399942.U3PIX4_9CAUD	52.8	0.00000018	N/A	N/A
PHROG	UHGV-0000129_8	phrog_372	135.3	5.70001e-40	tail protein	tail
eggNOG-mapper	UHGV-0000129_8	207656.S6B662_9CAUD	86.3	0.0000000000000133	N-acetylmuramoyl-L-alanine amidase activity	N/A
PHROG	UHGV-0000129_9	phrog_21973	170.4	0	tail protein	tail
eggNOG-mapper	UHGV-0000129_9	1391188.A0A068EMP3_9CAUD	168.0	6.34001e-40	N/A	N/A
Pfam	UHGV-0000129_9	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0000129_10	phrog_31411	81.0	1.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0000129_10	445971.ANASTE_00728	320.0	0	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	N/A
Pfam	UHGV-0000129_10	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0000129_10	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0000129_10	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
UniRef90	UHGV-0000129_13	UniRef90_UPI001407F823	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000129_13	445971.ANASTE_00721	314.0	0	N/A	N/A
structural_annotation	UHGV-0000129_13	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0000129_14	phrog_13046	65.2	9.6e-19	N/A	unknown function
structural_annotation	UHGV-0000129_14	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000129_16	78344.BIGA_0457	59.7	0.000000331	N/A	N/A
structural_annotation	UHGV-0000129_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0000129_18	phrog_156	88.9	5.7e-27	portal protein	head and packaging
eggNOG-mapper	UHGV-0000129_18	445971.ANASTE_00716	441.0	0	N/A	N/A
structural_annotation	UHGV-0000129_18	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_21	K06909	109.4	4.1e-32	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0000129_21	phrog_979	171.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0000129_21	UniRef90_A0A843HPA6	587.0	0	Terminase family protein	N/A
eggNOG-mapper	UHGV-0000129_21	1408437.JNJN01000002_gene1397	468.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0000129_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0000129_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0000129_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_22	K07474	59.9	8.7e-17	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0000129_22	phrog_1595	71.9	1.1e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0000129_22	UniRef90_A0A139MD41	87.8	1.43e-19	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0000129_22	764299.STRIC_2523	67.4	0.00000000000334	DNA packaging	N/A
Pfam	UHGV-0000129_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0000129_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0000129_22	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000129_24	PF15456	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000129_31	PF09654,TIGR02652	N/A	N/A	N/A	N/A
Pfam	UHGV-0000129_34	PF04570	N/A	N/A	zinc-finger of the FCS-type, C2-C2	zf-FLZ
PHROG	UHGV-0000129_40	phrog_4601	40.8	0.0000000000088	N/A	unknown function
PHROG	UHGV-0000129_44	phrog_72	64.7	1.5e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000129_44	445972.ANACOL_01825	79.7	1.61e-16	N/A	N/A
structural_annotation	UHGV-0000129_44	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_45	K03111	136.8	2.29999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000129_45	phrog_44	148.4	3.64338e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000129_45	UniRef90_A0A7X6SI00	139.0	2.09e-39	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000129_45	1545701.LACWKB10_1167	125.0	3.03e-35	Single-strand binding protein family	N/A
Pfam	UHGV-0000129_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0000129_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0000129_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0000129_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000129_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0000129_47	phrog_434	61.5	1.4e-17	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000129_47	1462526.BN990_01808	82.8	6.44e-17	N/A	N/A
Pfam	UHGV-0000129_47	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0000129_47	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000129_48	UniRef90_UPI00122ECE7D	135.0	3.4e-36	N/A	N/A
eggNOG-mapper	UHGV-0000129_48	445972.ANACOL_01823	117.0	8.73e-30	N/A	N/A
Pfam	UHGV-0000129_48	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0000129_48	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_52	K02086	64.8	1.4e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0000129_52	phrog_186	57.4	3.3e-16	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000129_52	148814.JI66_02290	55.5	0.0000000925	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0000129_52	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0000129_52	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0000129_52	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0000129_55	phrog_989	49.0	0.000000000000062	N/A	unknown function
Pfam	UHGV-0000129_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0000129_56	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_57	K07729	40.0	0.000000000078	K07729; putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0000129_57	1121289.JHVL01000065_gene320	48.9	0.00000408	sequence-specific DNA binding	N/A
Pfam	UHGV-0000129_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000129_57	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0000129_57	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_58	K07729	63.2	5.3e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0000129_58	phrog_8	66.8	2.8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000129_58	UniRef90_A0A353JBB9	112.0	1.79e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0000129_58	153721.MYP_1445	60.5	0.000000000734	sequence-specific DNA binding	N/A
Pfam	UHGV-0000129_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000129_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000129_58	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_60	K14059	157.6	0	int; integrase	N/A
PHROG	UHGV-0000129_60	phrog_1	150.9	1.12104e-44	integrase	integration and excision
UniRef90	UHGV-0000129_60	UniRef90_R7IG47	343.0	0	Putative phage integrase	N/A
eggNOG-mapper	UHGV-0000129_60	224308.BSU04800	110.0	1.9e-24	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0000129_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0000129_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0000129_60	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_62	K22300	67.9	2.3e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0000129_62	phrog_8	62.6	6.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000129_62	UniRef90_R5YNU8	335.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0000129_62	428126.CLOSPI_01253	116.0	3.48e-31	sequence-specific DNA binding	N/A
PADLOC	UHGV-0000129_62	retron_type_VI_hth_cluster2_1	40.1	0.00000000011	N/A	Retron
Pfam	UHGV-0000129_62	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000129_62	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0000129_63	UniRef90_R5Z2T8	160.0	0	Transcriptional regulator Cro/CI family	N/A
eggNOG-mapper	UHGV-0000129_63	1122216.AUHW01000006_gene368	65.5	0.000000000000519	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0000129_63	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0000129_63	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0000129_63	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0000129_64	K01934	127.9	1.3e-37	MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]	N/A
UniRef90	UHGV-0000129_64	UniRef90_R5YED9	343.0	0	5-formyltetrahydrofolate cyclo-ligase	N/A
eggNOG-mapper	UHGV-0000129_64	697329.Rumal_1955	125.0	7.59e-34	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family	N/A
Pfam	UHGV-0000129_64	PF01812	N/A	N/A	5-formyltetrahydrofolate cyclo-ligase family	5-FTHF_cyc-lig
NCBIFam	UHGV-0000129_64	TIGR02727.1	N/A	N/A	5-formyltetrahydrofolate cyclo-ligase	N/A
COG	UHGV-0000129_64	COG0212	N/A	N/A	5-formyltetrahydrofolate cyclo-ligase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0000129	Yes	41,710	27	100	1
UHGV-0107901	No	20,454	28	55	1