vOTU vOTU-060431

vOTU: vOTU-060431

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060431
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00043 → vGENUS-17830 → vSUBGEN-33385 → vOTU-060431
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0001835
Biosample ID	SAMEA4766414
Genome length (bp)	39,297 bps
CheckV completeness	99.90% (High-quality)
CDS count	48
CDS density	89.03%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	9	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Blautia_A → Blautia_A sp900066145	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0001835_1	phrog_38078	46.6	0.000000000000024	N/A	unknown function
UniRef90	UHGV-0001835_1	UniRef90_A0A412SB50	451.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0001835_1	476272.RUMHYD_00843	206.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0001835_1	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0001835_1	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0001835_1	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0001835_1	PF08239,PF09953,NF040678,COG3942,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_2	phrog_199	72.2	5.9e-21	holin	lysis
UniRef90	UHGV-0001835_2	UniRef90_A0A417CRV5	279.0	0	Holin	N/A
eggNOG-mapper	UHGV-0001835_2	411460.RUMTOR_02100	221.0	0	N/A	N/A
Pfam	UHGV-0001835_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0001835_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0001835_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0001835_3	K14054	46.6	0.00000000000045	mpaA; murein peptide amidase A	N/A
PHROG	UHGV-0001835_3	phrog_4722	115.3	3.3e-34	zinc carboxypeptidase	other
UniRef90	UHGV-0001835_3	UniRef90_UPI000B10DD3D	111.0	2.27e-25	M14 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0001835_3	1147042.H9A0W3_9CAUD	109.0	1.17e-23	metallocarboxypeptidase activity	N/A
Pfam	UHGV-0001835_3	PF00246	N/A	N/A	Zinc carboxypeptidase	Peptidase_M14
KOfam	UHGV-0001835_4	K10804	48.2	0.000000000000064	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0001835_4	phrog_26878	47.3	0.0000000000000011	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0001835_4	1122931.AUAE01000019_gene984	78.2	0.00000000000226	GDSL-like Lipase/Acylhydrolase family	N/A
PHROG	UHGV-0001835_5	phrog_18444	72.5	3.9e-21	N/A	unknown function
UniRef90	UHGV-0001835_5	UniRef90_UPI00156E9A45	68.2	0.0000000000001	peptide chain release factor 2	N/A
PHROG	UHGV-0001835_6	phrog_6616	667.2	0	tail protein	tail
UniRef90	UHGV-0001835_6	UniRef90_R5QUN9	783.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0001835_6	33035.JPJF01000043_gene1002	194.0	0	N/A	N/A
structural_annotation	UHGV-0001835_6	PF05113,PF18957,PF16407,NF033848,NF011782,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_7	phrog_1194	70.4	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0001835_7	33035.JPJF01000093_gene2242	160.0	0	N/A	N/A
structural_annotation	UHGV-0001835_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_8	phrog_1535	280.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0001835_8	UniRef90_A0A1C5PIN9	950.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0001835_8	33035.JPJF01000093_gene2243	561.0	0	phage tail tape measure protein	N/A
COG	UHGV-0001835_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0001835_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_10	phrog_8355	107.9	3e-32	N/A	unknown function
UniRef90	UHGV-0001835_10	UniRef90_UPI001D093271	112.0	2.19e-30	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0001835_10	33035.JPJF01000093_gene2244	111.0	2.54e-31	N/A	N/A
PHROG	UHGV-0001835_11	phrog_8300	93.2	2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0001835_11	742740.HMPREF9474_03512	97.1	5.2e-25	N/A	N/A
structural_annotation	UHGV-0001835_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_12	phrog_820	122.8	1.7e-36	major tail protein	tail
eggNOG-mapper	UHGV-0001835_12	1282664.H354_06691	214.0	0	N/A	N/A
structural_annotation	UHGV-0001835_12	PF06199,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_13	phrog_2595	75.0	9.3e-22	head-tail connector protein	connector
UniRef90	UHGV-0001835_13	UniRef90_UPI001C00BA9C	182.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0001835_13	585501.HMPREF6123_0830	92.0	4.58e-22	N/A	N/A
Pfam	UHGV-0001835_13	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0001835_13	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_14	phrog_556	41.1	0.00000000000045	minor head protein	head and packaging
eggNOG-mapper	UHGV-0001835_14	742740.HMPREF9474_03509	159.0	0	N/A	N/A
PHROG	UHGV-0001835_15	phrog_8710	141.7	1.80067e-42	N/A	unknown function
eggNOG-mapper	UHGV-0001835_15	1304866.K413DRAFT_0782	151.0	0	N/A	N/A
structural_annotation	UHGV-0001835_15	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_16	phrog_541	87.3	1.5e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0001835_16	742740.HMPREF9474_03507	202.0	0	N/A	N/A
PHROG	UHGV-0001835_17	phrog_15682	71.1	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0001835_17	469618.FVAG_01311	72.4	0.00000000000000142	N/A	N/A
PHROG	UHGV-0001835_18	phrog_212	284.7	0	major head protein	head and packaging
UniRef90	UHGV-0001835_18	UniRef90_A0A416Q289	566.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0001835_18	1151292.QEW_2433	480.0	0	N/A	N/A
Pfam	UHGV-0001835_18	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0001835_18	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_19	phrog_194	168.9	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0001835_19	UniRef90_UPI001D02A5C9	344.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0001835_19	1262449.CP6013_3198	160.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0001835_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0001835_19	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001835_22	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_23	phrog_581	250.7	0	minor head protein	head and packaging
UniRef90	UHGV-0001835_23	UniRef90_A0A1C5PIA8	768.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0001835_23	33035.JPJF01000093_gene2255	499.0	0	N/A	N/A
Pfam	UHGV-0001835_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0001835_23	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0001835_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_24	phrog_533	270.0	0	portal protein	head and packaging
UniRef90	UHGV-0001835_24	UniRef90_UPI0011DCF338	1028.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0001835_24	1294142.CINTURNW_1024	506.0	0	N/A	N/A
Pfam	UHGV-0001835_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0001835_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0001835_25	K06909	72.9	4.9e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0001835_25	phrog_2	53.9	0.0000000000000046	terminase large subunit	head and packaging
UniRef90	UHGV-0001835_25	UniRef90_UPI0011DDB413	815.0	0	terminase	N/A
eggNOG-mapper	UHGV-0001835_25	742740.HMPREF9474_03500	595.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0001835_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0001835_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_26	phrog_309	194.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0001835_26	UniRef90_UPI001C0F3787	259.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0001835_26	742733.HMPREF9469_01828	181.0	0	transposase activity	N/A
Pfam	UHGV-0001835_26	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0001835_26	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0001835_26	PF07141	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0001835_27	41431.PCC8801_3065	54.7	0.00000121	N/A	N/A
structural_annotation	UHGV-0001835_27	PF11026	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001835_28	UniRef90_A0A841KYH0	169.0	0	Ribosome-associated translation inhibitor RaiA	N/A
eggNOG-mapper	UHGV-0001835_28	41431.PCC8801_3064	87.8	5.59e-17	N/A	N/A
structural_annotation	UHGV-0001835_28	PF20505,NF001461	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_29	phrog_36	63.4	4.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0001835_29	UniRef90_R6ZAS5	146.0	5.62061e-42	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0001835_29	476272.RUMHYD_02841	194.0	0	N/A	N/A
structural_annotation	UHGV-0001835_29	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001835_30	UniRef90_K1T9Q6	97.4	2.03e-24	N/A	N/A
PHROG	UHGV-0001835_32	phrog_954	220.0	0	DNA methyltransferase	other
UniRef90	UHGV-0001835_32	UniRef90_UPI00189C6FDE	315.0	0	methyltransferase	N/A
eggNOG-mapper	UHGV-0001835_32	1280698.AUJS01000007_gene1028	206.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0001835_32	MTase_II_00074	212.4	0	Type II methyltransferase	RM
COG	UHGV-0001835_32	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0001835_32	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0001835_34	1196322.A370_05726	50.4	0.000000522	N/A	N/A
PHROG	UHGV-0001835_35	phrog_15077	215.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0001835_35	411459.RUMOBE_00949	183.0	0	N/A	N/A
COG	UHGV-0001835_35	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-0001835_36	K03469	57.5	2.9e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0001835_36	phrog_531	51.4	0.00000000000002	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001835_36	UniRef90_A0A417CPS0	122.0	3.41e-33	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0001835_36	411459.RUMOBE_00952	101.0	8.67e-26	RNase H	N/A
Pfam	UHGV-0001835_36	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0001835_36	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0001835_36	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_37	phrog_3584	147.0	1.09301e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0001835_37	1280698.AUJS01000007_gene1013	313.0	0	N/A	N/A
structural_annotation	UHGV-0001835_37	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001835_40	UniRef90_UPI00129DCFE7	107.0	7.14e-28	HTH domain-containing protein	N/A
structural_annotation	UHGV-0001835_40	PF20063	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001835_41	PF17950	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_43	phrog_8	56.4	7.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0001835_43	UniRef90_UPI00130E3D9D	125.0	1.86e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0001835_43	411459.RUMOBE_00960	101.0	7.28e-28	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0001835_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0001835_43	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0001835_44	K22300	53.6	0.0000000000000047	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0001835_44	phrog_8	69.1	9.1e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0001835_44	UniRef90_A0A355NMI4	207.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0001835_44	411460.RUMTOR_02056	194.0	0	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0001835_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0001835_44	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0001835_44	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001835_45	UniRef90_A0A1C5W1A8	173.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0001835_45	748727.CLJU_c39230	110.0	1.57e-29	N/A	N/A
Pfam	UHGV-0001835_45	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-0001835_45	PF18812,TIGR00053,COG2929	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_46	phrog_87	100.3	1.3e-29	metallo-protease	other
UniRef90	UHGV-0001835_46	UniRef90_A0A1C5Z1C1	284.0	0	Metallopeptidase immA	N/A
eggNOG-mapper	UHGV-0001835_46	411460.RUMTOR_02055	190.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0001835_46	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0001835_46	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0001835_46	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0001835_47	phrog_1847	347.8	0	N/A	unknown function
UniRef90	UHGV-0001835_47	UniRef90_A0A1C5Z1C0	826.0	0	T5orf172 domain	N/A
eggNOG-mapper	UHGV-0001835_47	1256908.HMPREF0373_00641	483.0	0	T5orf172	N/A
Pfam	UHGV-0001835_47	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0001835_47	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0001835_47	PF13250,NF041454	N/A	N/A	N/A	N/A
KOfam	UHGV-0001835_48	K14059	184.7	0	int; integrase	N/A
PHROG	UHGV-0001835_48	phrog_1	187.2	0	integrase	integration and excision
UniRef90	UHGV-0001835_48	UniRef90_A0A1C5Z1D0	655.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0001835_48	1280698.AUJS01000007_gene999	325.0	0	Phage integrase family	N/A
Pfam	UHGV-0001835_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0001835_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0001835_48	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0001835	Yes	39,297	42	100	1