vOTU vOTU-060494

vOTU: vOTU-060494

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060494
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-01788 → vSUBGEN-34824 → vOTU-060494
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0372570
Biosample ID	N/A
Genome length (bp)	33,741 bps
CheckV completeness	91.52% (High-quality)
CDS count	52
CDS density	90.58%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	678	Host agreement	85.99
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	195	Host agreement	92.82

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0372570_1	UniRef90_A0A413K9A1	67.8	0.0000000000000196	Transposase (Fragment)	N/A
eggNOG-mapper	UHGV-0372570_1	877420.ATVW01000040_gene1753	83.2	9.1e-21	Transposase	N/A
COG	UHGV-0372570_1	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0372570_2	1410653.JHVC01000001_gene1475	50.1	0.000000416	COG3209 Rhs family protein	N/A
COG	UHGV-0372570_2	COG3209	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0372570_3	PF12305	N/A	N/A	N/A	N/A
KOfam	UHGV-0372570_4	K14059	217.0	0	int; integrase	N/A
PHROG	UHGV-0372570_4	phrog_1	189.3	0	integrase	integration and excision
UniRef90	UHGV-0372570_4	UniRef90_A0A2N0ULT2	468.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0372570_4	428125.CLOLEP_02743	317.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0372570_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0372570_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0372570_4	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_5	phrog_1847	526.8	0	N/A	unknown function
UniRef90	UHGV-0372570_5	UniRef90_A0A355NQ11	446.0	0	N/A	N/A
eggNOG-mapper	UHGV-0372570_5	1200557.JHWV01000022_gene2461	394.0	0	T5orf172	N/A
Pfam	UHGV-0372570_5	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0372570_5	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-0372570_5	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0372570_5	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
UniRef90	UHGV-0372570_6	UniRef90_A0A374E958	63.2	0.0000000000126	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0372570_6	1232443.BAIA02000106_gene3117	70.9	0.000000000000014	N/A	N/A
structural_annotation	UHGV-0372570_6	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_7	phrog_2967	72.5	5.9e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0372570_7	UniRef90_A0A412UNH6	211.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0372570_7	861450.HMPREF0080_02022	88.6	8.79e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0372570_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0372570_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0372570_7	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0372570_8	K07729	50.5	0.000000000000048	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0372570_8	phrog_6499	44.2	0.0000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0372570_8	UniRef90_A0A348ZC94	113.0	1.84e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0372570_8	1235801.C822_00106	63.5	0.00000000000142	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0372570_8	retron_type_VI_hth_cluster2_1	44.6	0.0000000000042	N/A	Retron
Pfam	UHGV-0372570_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0372570_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0372570_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0372570_11	UniRef90_UPI0005510EBF	64.7	0.00000000000484	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0372570_12	COG1862	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0372570_15	PF04570,COG2075	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_16	phrog_674	135.2	5e-40	N/A	unknown function
UniRef90	UHGV-0372570_16	UniRef90_A0A374N9T8	353.0	0	N/A	N/A
eggNOG-mapper	UHGV-0372570_16	641112.ACOK01000103_gene524	177.0	0	N/A	N/A
Pfam	UHGV-0372570_16	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0372570_16	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0372570_17	K07455	193.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0372570_17	phrog_148	208.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0372570_17	UniRef90_A0A374N9W0	505.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0372570_17	428127.EUBDOL_01509	277.0	0	RecT family	N/A
Pfam	UHGV-0372570_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0372570_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0372570_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0372570_17	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0372570_18	K06167	53.2	0.0000000000000047	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0372570_18	phrog_392	125.3	5.9e-37	metal-dependent hydrolase	other
UniRef90	UHGV-0372570_18	UniRef90_A0A373XYI8	349.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0372570_18	665956.HMPREF1032_03101	156.0	5.60519e-45	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0372570_18	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0372570_18	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0372570_18	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_19	phrog_398	208.2	0	N/A	unknown function
UniRef90	UHGV-0372570_19	UniRef90_UPI000C7B20DA	192.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0372570_19	293826.Amet_2584	176.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0372570_19	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0372570_19	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_20	phrog_2562	138.5	5.79997e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0372570_20	UniRef90_A0A374NA85	322.0	0	N/A	N/A
eggNOG-mapper	UHGV-0372570_20	1235790.C805_00030	146.0	1.71e-39	N/A	N/A
Pfam	UHGV-0372570_20	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0372570_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0372570_20	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0372570_21	K02315	130.3	1.9e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0372570_21	phrog_50	128.4	6.9e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0372570_21	UniRef90_A0A374UPV4	515.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0372570_21	445972.ANACOL_01829	205.0	0	N/A	N/A
Pfam	UHGV-0372570_21	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0372570_21	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0372570_21	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0372570_22	K01160	52.9	0.000000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0372570_22	phrog_140	98.8	6e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0372570_22	UniRef90_A0A374US90	221.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0372570_22	411462.DORLON_00806	186.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0372570_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0372570_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0372570_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0372570_23	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0372570_24	PF02796,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_26	phrog_8684	107.2	1.1e-32	N/A	unknown function
UniRef90	UHGV-0372570_26	UniRef90_A0A374DV44	177.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0372570_26	1458852.A0A059T7V5_9CAUD	86.7	6.88e-20	YopX protein	N/A
Pfam	UHGV-0372570_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0372570_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0372570_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_27	phrog_22543	61.0	2e-17	N/A	unknown function
PHROG	UHGV-0372570_28	phrog_25754	65.6	3.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0372570_28	97139.C824_00736	69.3	0.000000000000085	N/A	N/A
structural_annotation	UHGV-0372570_28	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0372570_29	NF041288,COG4830	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_31	phrog_954	201.6	0	DNA methyltransferase	other
UniRef90	UHGV-0372570_31	UniRef90_A0A2N0ULX9	319.0	0	Methyltransf_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-0372570_31	1284352.AOIG01000022_gene3791	199.0	0	methyltransferase	N/A
PADLOC	UHGV-0372570_31	MTase_II_00074	205.7	0	Type II methyltransferase	RM
Pfam	UHGV-0372570_31	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0372570_31	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0372570_31	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0372570_32	1540257.JQMW01000004_gene433	50.8	0.0000026	N/A	N/A
structural_annotation	UHGV-0372570_32	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_33	phrog_309	149.3	7.00649e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0372570_33	UniRef90_UPI001A9BCC34	226.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0372570_33	693746.OBV_18020	147.0	1.13505e-43	transposase activity	N/A
Pfam	UHGV-0372570_33	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0372570_33	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0372570_33	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0372570_34	K06909	76.0	5.4e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0372570_34	phrog_2	86.7	4.4e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0372570_34	UniRef90_UPI00189AB5B3	862.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0372570_34	1304866.K413DRAFT_3034	609.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0372570_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0372570_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0372570_34	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_35	phrog_533	327.7	0	portal protein	head and packaging
UniRef90	UHGV-0372570_35	UniRef90_UPI00189C53D6	807.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0372570_35	1304866.K413DRAFT_3035	471.0	0	N/A	N/A
structural_annotation	UHGV-0372570_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_36	phrog_581	300.0	0	minor head protein	head and packaging
UniRef90	UHGV-0372570_36	UniRef90_UPI001897AC3D	1092.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0372570_36	1449050.JNLE01000003_gene3892	358.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0372570_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0372570_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0372570_36	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_37	phrog_419	86.6	3.2e-27	N/A	unknown function
UniRef90	UHGV-0372570_37	UniRef90_UPI001E40EA70	108.0	5.79e-30	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0372570_37	203119.Cthe_2457	101.0	8.13e-28	N/A	N/A
structural_annotation	UHGV-0372570_37	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_39	phrog_194	102.9	3.9e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0372570_39	UniRef90_UPI0018995066	342.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0372570_39	742765.HMPREF9457_02126	171.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0372570_39	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0372570_39	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_40	phrog_422	235.4	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0372570_40	693746.OBV_18090	384.0	0	N/A	N/A
structural_annotation	UHGV-0372570_40	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_41	phrog_541	77.0	2.4e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-0372570_41	1449050.JNLE01000003_gene3888	78.2	5.28e-17	N/A	N/A
PHROG	UHGV-0372570_42	phrog_3366	64.2	1.6e-18	N/A	unknown function
Pfam	UHGV-0372570_42	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0372570_42	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_43	phrog_556	110.4	2.3e-33	minor head protein	head and packaging
UniRef90	UHGV-0372570_43	UniRef90_UPI00189BC4F9	316.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0372570_43	1449050.JNLE01000003_gene3886	144.0	7.04993e-42	N/A	N/A
Pfam	UHGV-0372570_43	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0372570_43	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_44	phrog_3266	96.0	3e-28	tail completion	connector
eggNOG-mapper	UHGV-0372570_44	1449050.JNLE01000003_gene3885	142.0	1.85994e-41	N/A	N/A
structural_annotation	UHGV-0372570_44	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_45	phrog_3099	145.1	3.29305e-43	N/A	unknown function
eggNOG-mapper	UHGV-0372570_45	1160721.RBI_II00532	209.0	0	N/A	N/A
structural_annotation	UHGV-0372570_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_46	phrog_11299	104.4	1.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0372570_46	1449050.JNLE01000003_gene3883	69.3	0.000000000000543	N/A	N/A
structural_annotation	UHGV-0372570_46	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_47	phrog_706	130.5	1.2e-38	N/A	unknown function
UniRef90	UHGV-0372570_47	UniRef90_UPI001B3C82AE	255.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0372570_47	1160721.RBI_II00530	191.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0372570_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0372570_47	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-0372570_49	K20282	40.6	0.0000000000041	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0372570_49	phrog_1535	501.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0372570_49	UniRef90_A0A2N0ULX3	1151.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0372570_49	33035.JPJF01000093_gene2243	358.0	0	phage tail tape measure protein	N/A
COG	UHGV-0372570_49	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0372570_49	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_50	phrog_1194	62.4	7.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0372570_50	397290.C810_05238	95.5	2.55e-23	N/A	N/A
Pfam	UHGV-0372570_50	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0372570_50	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0372570_51	phrog_18190	72.6	1.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0372570_51	483218.BACPEC_01143	73.9	0.0000000000309	N/A	N/A
structural_annotation	UHGV-0372570_51	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0372570_52	1117958.PE143B_0112100	59.3	0.000000217	tail collar domain protein	N/A
COG	UHGV-0372570_52	COG4675	N/A	N/A	Phage tail collar domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0372570	Yes	33,741	39	92	1