vOTU vOTU-060599

vOTU: vOTU-060599

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060599
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00307 → vGENUS-03967 → vSUBGEN-36391 → vOTU-060599
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminiclostridium_E → Ruminiclostridium_E siraeum
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0015767
Biosample ID	SAMEA4765932
Genome length (bp)	37,175 bps
CheckV completeness	99.90% (High-quality)
CDS count	49
CDS density	92.49%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminiclostridium_E → Ruminiclostridium_E siraeum	Total connections	257	Host agreement	80.93
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminiclostridium_E → Ruminiclostridium_E sp003512525	Total connections	14	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0015767_1	K01447	64.1	2.9e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0015767_1	phrog_20388	199.4	0	endolysin	lysis
UniRef90	UHGV-0015767_1	UniRef90_A0A174YZL2	578.0	0	Cpl-7 lysozyme C-terminal domain	N/A
eggNOG-mapper	UHGV-0015767_1	478749.BRYFOR_08515	262.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0015767_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0015767_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0015767_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0015767_1	PF01510,PF18350,MF_04111,MF_01354,NF008758,COG3023,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_2	phrog_199	102.1	5.2e-30	holin	lysis
UniRef90	UHGV-0015767_2	UniRef90_R6RVE6	243.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0015767_2	720554.Clocl_3702	140.0	6.93993e-41	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0015767_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0015767_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0015767_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0015767_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_3	phrog_1401	43.8	0.0000000000033	N/A	unknown function
UniRef90	UHGV-0015767_3	UniRef90_UPI00129D2DCF	68.6	0.0000000000017	N/A	N/A
eggNOG-mapper	UHGV-0015767_3	1499683.CCFF01000014_gene3897	55.1	0.0000000401	N/A	N/A
structural_annotation	UHGV-0015767_3	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_4	phrog_2566	64.6	1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0015767_4	1294142.CINTURNW_1040	48.5	0.00000177	N/A	N/A
PHROG	UHGV-0015767_5	phrog_16267	107.7	0	N/A	unknown function
UniRef90	UHGV-0015767_5	UniRef90_A0A174YZH7	1144.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015767_5	1232453.BAIF02000058_gene1641	212.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0015767_5	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
Pfam	UHGV-0015767_5	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0015767_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0015767_5	PF14594,PF14879,NF033848,NF033675,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_6	phrog_1194	63.4	3.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0015767_6	877414.ATWA01000001_gene917	68.2	0.00000000000048	N/A	N/A
Pfam	UHGV-0015767_6	PF20458	N/A	N/A	N/A	DUF6711
PHROG	UHGV-0015767_7	phrog_1535	216.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0015767_7	UniRef90_A0A174Z8D9	1203.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0015767_7	1117108.PAALTS15_13517	236.0	0	minor tail protein	N/A
Pfam	UHGV-0015767_7	PF08655	N/A	N/A	DASH complex subunit Ask1	DASH_Ask1
COG	UHGV-0015767_7	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_8	phrog_8300	91.7	5.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0015767_8	1507.HMPREF0262_01185	90.1	3.79e-22	N/A	N/A
structural_annotation	UHGV-0015767_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_9	phrog_820	137.1	7.00005e-41	major tail protein	tail
eggNOG-mapper	UHGV-0015767_9	1507.HMPREF0262_01184	181.0	0	domain, Protein	N/A
COG	UHGV-0015767_9	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015767_9	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_10	phrog_2595	73.0	3.6e-21	head-tail connector protein	connector
UniRef90	UHGV-0015767_10	UniRef90_UPI001BEB3BC5	77.8	7.67e-16	minor capsid protein	N/A
eggNOG-mapper	UHGV-0015767_10	717606.PaecuDRAFT_3128	72.8	0.0000000000000112	N/A	N/A
Pfam	UHGV-0015767_10	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0015767_10	PF12691,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015767_11	UniRef90_UPI00058FDD53	89.0	4.56e-20	minor capsid protein	N/A
eggNOG-mapper	UHGV-0015767_11	1507.HMPREF0262_01182	95.1	2.97e-23	N/A	N/A
PHROG	UHGV-0015767_12	phrog_8710	114.4	5.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0015767_12	483218.BACPEC_01152	91.3	2.15e-22	N/A	N/A
structural_annotation	UHGV-0015767_12	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_13	phrog_541	77.1	2e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-0015767_13	1507.HMPREF0262_01180	86.7	3.06e-20	N/A	N/A
PHROG	UHGV-0015767_14	phrog_1378	62.9	4.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0015767_14	552396.HMPREF0863_01636	58.2	0.000000000233	N/A	N/A
PHROG	UHGV-0015767_15	phrog_422	319.4	0	major head protein	head and packaging
UniRef90	UHGV-0015767_15	UniRef90_A0A413RCT9	395.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0015767_15	483218.BACPEC_01155	368.0	0	N/A	N/A
structural_annotation	UHGV-0015767_15	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_16	phrog_2303	48.0	0.00000000000026	head scaffolding protein	head and packaging
PHROG	UHGV-0015767_18	phrog_581	276.5	0	minor head protein	head and packaging
UniRef90	UHGV-0015767_18	UniRef90_UPI000A270255	344.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015767_18	1507.HMPREF0262_01176	329.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0015767_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0015767_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015767_18	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_19	phrog_533	253.9	0	portal protein	head and packaging
UniRef90	UHGV-0015767_19	UniRef90_R6RJD0	945.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0015767_19	717606.PaecuDRAFT_3119	434.0	0	N/A	N/A
Pfam	UHGV-0015767_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0015767_19	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0015767_20	K06909	110.5	1.7e-32	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0015767_20	phrog_2	84.3	2.2e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0015767_20	UniRef90_R6RCX9	904.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0015767_20	1282664.H354_06621	624.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0015767_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0015767_20	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0015767_21	K07474	73.8	4.9e-21	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0015767_21	phrog_51	68.7	3.7e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0015767_21	UniRef90_R6RJD3	184.0	0	Phage Terminase Small Subunit	N/A
eggNOG-mapper	UHGV-0015767_21	1160721.RBI_II00483	101.0	6.68e-26	DNA packaging	N/A
Pfam	UHGV-0015767_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0015767_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0015767_21	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_22	phrog_7395	89.3	3.5e-26	N/A	unknown function
UniRef90	UHGV-0015767_22	UniRef90_UPI00069FFA16	89.0	3.34e-19	N/A	N/A
eggNOG-mapper	UHGV-0015767_22	1168067.JAGP01000001_gene1216	71.6	0.000000000000138	N/A	N/A
Pfam	UHGV-0015767_22	PF14015	N/A	N/A	N/A	DUF4231
NCBIFam	UHGV-0015767_22	NF033634.1	N/A	N/A	SLATT domain-containing protein	N/A
PHROG	UHGV-0015767_23	phrog_419	77.8	8.9e-25	N/A	unknown function
UniRef90	UHGV-0015767_23	UniRef90_UPI001E40EA70	102.0	2.28e-27	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0015767_23	596323.HMPREF0554_0262	94.7	3.88e-25	N/A	N/A
structural_annotation	UHGV-0015767_23	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_24	phrog_6988	133.1	9.79999e-40	N/A	unknown function
UniRef90	UHGV-0015767_24	UniRef90_A0A8H1A764	152.0	7.00649e-45	Nuclease	N/A
eggNOG-mapper	UHGV-0015767_24	203119.Cthe_2456	149.0	1.96182e-44	N/A	N/A
PADLOC	UHGV-0015767_24	ThsB1_00002	51.7	0.000000000000027	TIR-like	Thoeris
Pfam	UHGV-0015767_24	PF08937	N/A	N/A	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
structural_annotation	UHGV-0015767_24	PF08937,MF_03036,TIGR03646,COG0758	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_25	phrog_36	59.0	9.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0015767_25	UniRef90_A0A174ZYK6	219.0	0	Phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-0015767_25	1304880.JAGB01000002_gene2225	77.4	2.75e-16	N/A	N/A
structural_annotation	UHGV-0015767_25	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0015767_26	K14440	94.4	3.2e-28	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0015767_26	phrog_62	361.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015767_26	UniRef90_A0A2V2FWS9	751.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0015767_26	693746.OBV_01800	562.0	0	snf2 family	N/A
PADLOC	UHGV-0015767_26	DpdE_00010	73.7	2.3e-21	DpdE	DPD
Pfam	UHGV-0015767_26	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
COG	UHGV-0015767_26	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0015767_26	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_27	phrog_93	60.4	2.7e-17	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015767_27	UniRef90_A0A2V2FU35	100.0	1.62e-25	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0015767_27	1408303.JNJJ01000084_gene2552	87.0	3.58e-21	VRR_NUC	N/A
structural_annotation	UHGV-0015767_27	PF08774,NF002582	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_28	phrog_256	995.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015767_28	UniRef90_A0A2V2FYQ5	1245.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0015767_28	1203606.HMPREF1526_00242	1092.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0015767_28	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0015767_28	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0015767_28	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0015767_29	K02334	191.7	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0015767_29	phrog_7766	155.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015767_29	UniRef90_A0A380IEX1	141.0	9.06e-40	Prophage LambdaSa04, DNA polymerase	N/A
eggNOG-mapper	UHGV-0015767_29	1203606.HMPREF1526_00239	226.0	0	DNA polymerase	N/A
COG	UHGV-0015767_29	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
KOfam	UHGV-0015767_30	K02334	637.5	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0015767_30	phrog_17	301.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015767_30	UniRef90_A0A329UVL7	780.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0015767_30	1203606.HMPREF1526_00239	714.0	0	DNA polymerase	N/A
Pfam	UHGV-0015767_30	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0015767_30	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0015767_30	PF00476,MF_04101,NF011541,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_31	phrog_112	167.1	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015767_31	UniRef90_A0A2V2FV77	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-0015767_31	1203606.HMPREF1526_00235	242.0	0	N/A	N/A
Pfam	UHGV-0015767_31	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0015767_31	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_33	phrog_69	310.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015767_33	UniRef90_A0A2V2FS99	553.0	0	N/A	N/A
eggNOG-mapper	UHGV-0015767_33	1449126.JQKL01000006_gene838	399.0	0	N/A	N/A
Pfam	UHGV-0015767_33	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0015767_33	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0015767_33	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_35	phrog_18562	71.1	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0015767_35	679201.HMPREF9334_00305	60.1	0.00000000432	N/A	N/A
PHROG	UHGV-0015767_36	phrog_27517	45.8	0.00000000000098	N/A	unknown function
UniRef90	UHGV-0015767_38	UniRef90_D4JVL4	138.0	9.01035e-42	DNA binding domain, excisionase family	N/A
Pfam	UHGV-0015767_38	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0015767_38	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0015767_38	COG1762	N/A	N/A	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	N/A
eggNOG-mapper	UHGV-0015767_40	1262449.CP6013_3197	52.8	0.00000000861	N/A	N/A
UniRef90	UHGV-0015767_42	UniRef90_A0A373XXU1	98.6	1.41e-25	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0015767_42	428125.CLOLEP_02737	47.8	0.00000336	N/A	N/A
PHROG	UHGV-0015767_43	phrog_8	52.4	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0015767_43	UniRef90_A0A373XY93	203.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0015767_43	1160721.RBI_I01471	65.1	0.00000000000753	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0015767_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0015767_43	PF12844,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_44	phrog_20936	44.9	0.0000000000022	N/A	unknown function
UniRef90	UHGV-0015767_44	UniRef90_A0A374E958	119.0	6.2e-34	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0015767_44	861450.HMPREF0080_02020	50.8	0.000000198	N/A	N/A
structural_annotation	UHGV-0015767_44	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0015767_45	phrog_17596	43.1	0.0000000000069	N/A	unknown function
eggNOG-mapper	UHGV-0015767_45	931276.Cspa_c57370	60.8	0.000000259	Phage Mu protein F like protein	N/A
COG	UHGV-0015767_45	COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015767_48	UniRef90_A0A6N4ALK1	127.0	2.77e-37	RHH_1 domain-containing protein	N/A
Pfam	UHGV-0015767_48	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0015767_48	PF01402,NF040976,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0015767_49	K14059	201.2	0	int; integrase	N/A
PHROG	UHGV-0015767_49	phrog_1	194.2	0	integrase	integration and excision
UniRef90	UHGV-0015767_49	UniRef90_A0A174ZR64	756.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0015767_49	428125.CLOLEP_02743	321.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0015767_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0015767_49	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0015767_49	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0015767	Yes	37,175	45	100	1
UHGV-0001110	No	38,788	45	100	1
UHGV-0033067	No	37,175	45	100	1
UHGV-0012085	No	36,963	45	99	1
UHGV-0012545	No	32,761	46	88	1
UHGV-0004285	No	31,563	46	85	1