vOTU vOTU-060844

vOTU: vOTU-060844

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060844
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00045 → vSUBFAM-00741 → vGENUS-00694 → vSUBGEN-00326 → vOTU-060844
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Duodenibacillus → Duodenibacillus massiliensis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1394054
Biosample ID	SAMEA4545404
Genome length (bp)	37,997 bps
CheckV completeness	90.60% (High-quality)
CDS count	58
CDS density	95.04%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Duodenibacillus → Duodenibacillus massiliensis	Total connections	44	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1394054_1	phrog_19111	125.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1394054_1	1297617.JPJD01000034_gene670	60.1	0.000000407	N/A	N/A
structural_annotation	UHGV-1394054_1	PF16756,MF_01195,TIGR03548,COG3055	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_2	phrog_134	52.4	0.0000000000000071	N/A	unknown function
UniRef90	UHGV-1394054_2	UniRef90_A0A7X9H6W0	72.4	4.34e-16	XkdX family protein	N/A
eggNOG-mapper	UHGV-1394054_2	697281.Mahau_0596	65.5	0.00000000000004	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1394054_2	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1394054_2	PF09693,TIGR01669	N/A	N/A	N/A	N/A
UniRef90	UHGV-1394054_3	UniRef90_R6HCD7	129.0	8.23e-37	RNA binding protein Jsn1 putative	N/A
PHROG	UHGV-1394054_4	phrog_1419	88.0	1.4e-28	tail protein	tail
eggNOG-mapper	UHGV-1394054_4	742823.HMPREF9465_00923	128.0	5.43e-28	Membrane	N/A
COG	UHGV-1394054_4	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1394054_5	phrog_1396	41.8	0.000000000019	tail fiber protein	tail
UniRef90	UHGV-1394054_5	UniRef90_UPI0013F616D1	488.0	0	short-chain fatty acid transporter	N/A
eggNOG-mapper	UHGV-1394054_5	762966.HMPREF9439_01055	316.0	0	tail collar domain protein	N/A
COG	UHGV-1394054_5	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1394054_5	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_6	phrog_587	95.3	5.1e-29	structural protein	head and packaging
UniRef90	UHGV-1394054_6	UniRef90_UPI0013F5E2B1	252.0	0	N/A	N/A
eggNOG-mapper	UHGV-1394054_6	742823.HMPREF9465_00926	251.0	0	N/A	N/A
Pfam	UHGV-1394054_6	PF11041	N/A	N/A	N/A	DUF2612
structural_annotation	UHGV-1394054_6	PF11041,TIGR02242,COG3948	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_7	phrog_6	159.6	0	baseplate protein	tail
UniRef90	UHGV-1394054_7	UniRef90_K1KI67	534.0	0	Baseplate_J domain-containing protein	N/A
eggNOG-mapper	UHGV-1394054_7	742823.HMPREF9465_00927	534.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-1394054_7	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-1394054_7	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_7	PF04865,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_8	phrog_120	63.2	4e-18	baseplate protein	tail
eggNOG-mapper	UHGV-1394054_8	1203554.HMPREF1476_01519	74.3	0.00000000000000154	N/A	N/A
structural_annotation	UHGV-1394054_8	PF10761,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_9	phrog_3216	51.7	0.000000000000015	baseplate assembly protein	tail
UniRef90	UHGV-1394054_9	UniRef90_K1JIF5	219.0	0	Phage_spike domain-containing protein	N/A
eggNOG-mapper	UHGV-1394054_9	742823.HMPREF9465_00928	219.0	0	Baseplate assembly protein	N/A
COG	UHGV-1394054_9	COG4540	N/A	N/A	Phage P2 baseplate assembly protein gpV	N/A
structural_annotation	UHGV-1394054_9	PF18352,TIGR01644,COG4384	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_10	phrog_196	107.8	1.3e-31	virion structural protein	head and packaging
UniRef90	UHGV-1394054_10	UniRef90_F3QJE9	226.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1394054_10	469610.HMPREF0189_01203	240.0	0	N/A	N/A
structural_annotation	UHGV-1394054_10	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_11	phrog_349	43.3	0.000000000006	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1394054_11	1236501.BAJU01000020_gene2009	49.7	0.00000225	N/A	N/A
PHROG	UHGV-1394054_12	phrog_1830	71.4	1.2e-20	N/A	unknown function
UniRef90	UHGV-1394054_12	UniRef90_F3QJE7	85.1	1.26e-17	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1394054_12	469610.HMPREF0189_01201	90.5	1.76e-20	N/A	N/A
structural_annotation	UHGV-1394054_12	PF21821,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_13	phrog_58	56.7	2.9e-16	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1394054_13	742823.HMPREF9465_00932	144.0	1.33e-33	domain protein	N/A
COG	UHGV-1394054_13	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_14	phrog_1932	52.3	0.0000000000000062	tail assembly chaperone	tail
eggNOG-mapper	UHGV-1394054_14	742823.HMPREF9465_00933	92.4	3.96e-22	N/A	N/A
Pfam	UHGV-1394054_14	PF21822	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
structural_annotation	UHGV-1394054_14	PF21822	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_15	phrog_1964	102.0	5.2e-30	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1394054_15	762966.HMPREF9439_01045	100.0	2.58e-25	N/A	N/A
structural_annotation	UHGV-1394054_15	PF11681,TIGR01603,COG3157	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_16	phrog_205	157.1	0	virion structural protein	head and packaging
UniRef90	UHGV-1394054_16	UniRef90_UPI0013F5A4D1	510.0	0	N/A	N/A
eggNOG-mapper	UHGV-1394054_16	742823.HMPREF9465_00935	498.0	0	N/A	N/A
Pfam	UHGV-1394054_16	PF11863	N/A	N/A	N/A	DUF3383
structural_annotation	UHGV-1394054_16	PF11863,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_17	phrog_1876	77.8	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-1394054_17	762966.HMPREF9439_01041	106.0	1.42e-26	N/A	N/A
structural_annotation	UHGV-1394054_17	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_18	phrog_1912	45.6	0.0000000000011	head protein	head and packaging
UniRef90	UHGV-1394054_18	UniRef90_F3QJD9	113.0	2.99e-29	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1394054_18	762966.HMPREF9439_01040	113.0	5.02e-30	N/A	N/A
structural_annotation	UHGV-1394054_18	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_19	phrog_222	103.2	2.6e-30	tail protein	tail
UniRef90	UHGV-1394054_19	UniRef90_A0A6J5RNL9	58.5	0.0000000626	Bacteriophage HK97-gp10, putative tail-component	N/A
eggNOG-mapper	UHGV-1394054_19	1205683.CAKR01000013_gene1186	70.1	0.000000000000495	N/A	N/A
PHROG	UHGV-1394054_20	phrog_302	73.7	2.2e-21	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1394054_20	469610.HMPREF0189_01191	99.4	1.05e-24	N/A	N/A
Pfam	UHGV-1394054_20	PF13262	N/A	N/A	N/A	DUF4054
structural_annotation	UHGV-1394054_20	PF13262	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_22	phrog_264	161.6	0	major head protein	head and packaging
UniRef90	UHGV-1394054_22	UniRef90_UPI0010350299	267.0	0	N/A	N/A
eggNOG-mapper	UHGV-1394054_22	1205683.CAKR01000013_gene1189	267.0	0	Protein conserved in bacteria	N/A
Pfam	UHGV-1394054_22	PF09950	N/A	N/A	N/A	DUF2184
COG	UHGV-1394054_22	COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_22	PF09950,MF_04119,NF041155,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_23	phrog_2122	75.6	5.7e-22	minor head protein	head and packaging
eggNOG-mapper	UHGV-1394054_23	1408428.JNJP01000012_gene1116	63.9	0.000000000417	N/A	N/A
KOfam	UHGV-1394054_24	K09960	278.7	0	N/A	N/A
PHROG	UHGV-1394054_24	phrog_2229	315.2	0	head maturation protease	head and packaging
UniRef90	UHGV-1394054_24	UniRef90_UPI001E52763D	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-1394054_24	1408428.JNJP01000012_gene1115	218.0	0	N/A	N/A
Pfam	UHGV-1394054_24	PF09979	N/A	N/A	N/A	DUF2213
COG	UHGV-1394054_24	COG3566	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_24	PF09979,TIGR01543,COG3566	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_25	phrog_324	166.2	0	head morphogenesis	head and packaging
UniRef90	UHGV-1394054_25	UniRef90_A0A1Y4CYL3	202.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1394054_25	1408428.JNJP01000012_gene1114	219.0	0	protein homolog of phage Mu protein gp30	N/A
Pfam	UHGV-1394054_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1394054_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_25	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-1394054_26	K09961	338.8	0	N/A	N/A
PHROG	UHGV-1394054_26	phrog_146	278.2	0	portal protein	head and packaging
UniRef90	UHGV-1394054_26	UniRef90_UPI001D0BAEDD	330.0	0	N/A	N/A
eggNOG-mapper	UHGV-1394054_26	1408428.JNJP01000012_gene1113	328.0	0	N/A	N/A
Pfam	UHGV-1394054_26	PF06381	N/A	N/A	Anti-CBASS protein Acb1-like	Abc1-like
COG	UHGV-1394054_26	COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_26	PF06381,MF_04135,TIGR01555,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1394054_27	K06909	368.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1394054_27	phrog_3717	247.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1394054_27	UniRef90_A0A139K4Q1	581.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1394054_27	556268.OFAG_00321	465.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-1394054_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1394054_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1394054_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1394054_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1394054_28	phrog_309	58.1	6.6e-17	terminase small subunit	head and packaging
UniRef90	UHGV-1394054_28	UniRef90_UPI001F4FD8EF	124.0	2.88e-34	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1394054_28	742823.HMPREF9465_00949	135.0	3.45e-39	N/A	N/A
KOfam	UHGV-1394054_29	K07319	104.0	3.2e-31	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1394054_29	phrog_498	488.2	0	DNA methyltransferase	other
UniRef90	UHGV-1394054_29	UniRef90_A0A7M2X5S1	540.0	0	Site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1394054_29	742823.HMPREF9465_00225	514.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-1394054_29	MTase_II_00015	447.3	0	Type II methyltransferase	RM
Pfam	UHGV-1394054_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1394054_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1394054_29	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1394054_29	PF01555,MF_00786,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_30	PF06530,NF008895,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1394054_31	K01160	46.3	0.0000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1394054_31	phrog_140	124.7	5.8e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394054_31	UniRef90_UPI00195E0984	105.0	6.21e-26	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1394054_31	279238.Saro_3008	96.7	9.84e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1394054_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1394054_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1394054_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_34	COG3201	N/A	N/A	N/A	N/A
KOfam	UHGV-1394054_37	K17680	137.9	6.59998e-41	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1394054_37	phrog_5482	171.7	0	N/A	unknown function
UniRef90	UHGV-1394054_37	UniRef90_A0A643FF24	197.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1394054_37	398578.Daci_1933	187.0	0	DnaB-like helicase C terminal domain	N/A
Pfam	UHGV-1394054_37	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1394054_37	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1394054_37	PF03796,MF_04154,NF004109,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_39	phrog_1032	81.8	1.2e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394054_39	UniRef90_UPI001C97A427	68.9	0.000000000612	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1394054_39	1094496.m07a_10550	60.5	0.000000137	N/A	N/A
Pfam	UHGV-1394054_39	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1394054_39	COG3756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_39	PF01978,MF_01819,NF040939,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_41	phrog_1281	61.0	1.8e-17	N/A	unknown function
UniRef90	UHGV-1394054_41	UniRef90_UPI00063DB241	105.0	5.42e-26	N/A	N/A
eggNOG-mapper	UHGV-1394054_41	393921.HQ45_06855	67.8	0.00000000000206	Phage-associated protein	N/A
COG	UHGV-1394054_41	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394054_41	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_44	phrog_2324	145.0	2.00386e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394054_44	UniRef90_A0A6J5KNV3	110.0	1.4e-26	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1394054_44	1209989.TepiRe1_1126	97.8	2.89e-22	ERF superfamily	N/A
Pfam	UHGV-1394054_44	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1394054_44	PF04404,COG5055	N/A	N/A	N/A	N/A
KOfam	UHGV-1394054_45	K03111	158.7	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1394054_45	phrog_44	134.6	6.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394054_45	UniRef90_A0A512LBN4	125.0	7.6e-34	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1394054_45	1163617.SCD_n00654	119.0	1.45e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1394054_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1394054_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1394054_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1394054_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1394054_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_46	phrog_253	47.3	0.0000000000004	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1394054_46	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
eggNOG-mapper	UHGV-1394054_54	742821.HMPREF9464_01810	55.5	0.00000000386	N/A	N/A
KOfam	UHGV-1394054_55	K08640	90.9	2.2e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1394054_55	phrog_894	84.8	1.3e-24	endolysin	lysis
UniRef90	UHGV-1394054_55	UniRef90_A0A3B9QA10	253.0	0	Peptidase_M15_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1394054_55	641832.C3VVT1_9CAUD	92.4	2.38e-22	Peptidase M15	N/A
Pfam	UHGV-1394054_55	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
structural_annotation	UHGV-1394054_55	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_56	phrog_199	66.7	2.7e-19	holin	lysis
UniRef90	UHGV-1394054_56	UniRef90_UPI000A02732D	285.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1394054_56	742821.HMPREF9464_01076	104.0	3.01e-26	Bacteriophage holin family	N/A
Pfam	UHGV-1394054_56	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1394054_56	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1394054_56	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1394054_56	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1394054_57	phrog_2143	116.8	1.7e-34	N/A	unknown function
UniRef90	UHGV-1394054_57	UniRef90_UPI00158AE458	95.5	1.14e-20	glucosaminidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1394054_57	742823.HMPREF9465_00917	163.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1394054	Yes	37,997	57	91	1
UHGV-1470277	No	30,617	57	73	1