vOTU vOTU-060960

vOTU: vOTU-060960

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060960
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00317 → vGENUS-00274 → vSUBGEN-32556 → vOTU-060960
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0024304
Biosample ID	N/A
Genome length (bp)	37,189 bps
CheckV completeness	99.90% (High-quality)
CDS count	59
CDS density	90.87%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	55	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0024304_2	UniRef90_A0A8F0WD75	72.0	0.00000000000157	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0024304_2	1408437.JNJN01000043_gene801	73.2	0.000000000000103	N/A	N/A
UniRef90	UHGV-0024304_5	UniRef90_A0A8D9PDT6	64.3	0.0000000000137	Transcriptional regulatory protein	N/A
Pfam	UHGV-0024304_5	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0024304_5	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-0024304_6	phrog_1129	66.8	2.4e-19	holin	lysis
UniRef90	UHGV-0024304_6	UniRef90_UPI00189DD88C	126.0	2.95e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-0024304_6	1226322.HMPREF1545_00069	128.0	1.25e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0024304_6	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0024304_6	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_7	phrog_1863	54.3	9.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0024304_7	1226322.HMPREF1545_04027	72.0	0.00000000000000136	N/A	N/A
PHROG	UHGV-0024304_8	phrog_14030	170.3	0	N/A	unknown function
UniRef90	UHGV-0024304_8	UniRef90_A0A173XSJ1	192.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0024304_8	1321782.HMPREF1986_02283	186.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0024304_8	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0024304_8	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0024304_8	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0024304_8	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_9	phrog_27545	86.6	3.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0024304_9	1122971.BAME01000151_gene6566	101.0	8.44e-25	N/A	N/A
eggNOG-mapper	UHGV-0024304_12	742733.HMPREF9469_05009	62.8	0.00000000447	N/A	N/A
structural_annotation	UHGV-0024304_12	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_13	phrog_13589	168.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0024304_13	742733.HMPREF9469_05009	226.0	0	N/A	N/A
structural_annotation	UHGV-0024304_15	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024304_16	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_17	phrog_26795	115.5	2.9e-34	N/A	unknown function
eggNOG-mapper	UHGV-0024304_17	796940.HMPREF9628_00133	94.4	5.64e-19	N/A	N/A
structural_annotation	UHGV-0024304_17	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024304_18	UniRef90_A0A3D0W045	194.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0024304_18	1195236.CTER_5103	126.0	1.22e-27	N/A	N/A
structural_annotation	UHGV-0024304_18	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_19	phrog_33680	108.9	2.5e-32	N/A	unknown function
UniRef90	UHGV-0024304_19	UniRef90_UPI00098F054B	218.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0024304_19	1408415.JHXL01000001_gene400	196.0	0	phage tail tape measure protein	N/A
COG	UHGV-0024304_19	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0024304_19	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024304_21	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_22	phrog_88	50.0	0.000000000000047	major tail protein	tail
COG	UHGV-0024304_22	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024304_22	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024304_23	1203606.HMPREF1526_00974	93.2	4.29e-22	N/A	N/A
structural_annotation	UHGV-0024304_23	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024304_24	1203606.HMPREF1526_00975	65.9	0.00000000000246	N/A	N/A
structural_annotation	UHGV-0024304_24	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_25	phrog_25	49.6	0.000000000000069	head closure Hc1	connector
UniRef90	UHGV-0024304_25	UniRef90_A0A845R2W2	72.4	0.0000000000000502	Head-tail adaptor protein	N/A
Pfam	UHGV-0024304_25	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0024304_25	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0024304_25	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_26	phrog_40	43.6	0.0000000000036	head-tail adaptor Ad1	connector
UniRef90	UHGV-0024304_26	UniRef90_A0A8J6JAY9	64.7	0.000000000026	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0024304_26	1403313.AXBR01000002_gene4324	57.0	0.00000000281	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0024304_26	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0024304_26	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0024304_27	phrog_10	71.6	1.2e-20	major head protein	head and packaging
UniRef90	UHGV-0024304_27	UniRef90_UPI001BB4749F	451.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0024304_27	742740.HMPREF9474_04304	176.0	0	Phage capsid family	N/A
Pfam	UHGV-0024304_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0024304_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0024304_27	PF05065,PF14182,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0024304_28	K01358	96.3	4.6e-28	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0024304_28	phrog_94	165.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0024304_28	UniRef90_A0A644ZMQ3	233.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0024304_28	557436.Lreu_1115	135.0	2.23e-36	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0024304_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0024304_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0024304_28	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_29	phrog_12	288.6	0	portal protein	head and packaging
UniRef90	UHGV-0024304_29	UniRef90_A0A3D4EI33	573.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0024304_29	1120971.AUCA01000066_gene593	223.0	0	Phage portal protein	N/A
Pfam	UHGV-0024304_29	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0024304_29	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0024304_29	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0024304_29	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_31	phrog_9	337.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024304_31	UniRef90_A0A3D4EH51	911.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0024304_31	693746.OBV_20000	866.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0024304_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0024304_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0024304_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0024304_31	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_32	phrog_83	54.3	0.0000000000000028	terminase small subunit	head and packaging
UniRef90	UHGV-0024304_32	UniRef90_UPI000C77CC02	117.0	2.79e-30	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0024304_32	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0024304_32	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0024304_32	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_33	phrog_144	82.2	6.7e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024304_33	UniRef90_A0A3D4EH89	191.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0024304_33	742738.HMPREF9460_00869	155.0	0	HNH endonuclease	N/A
COG	UHGV-0024304_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0024304_33	PF01844,COG1403	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024304_34	UniRef90_UPI001F232519	73.9	4.91e-16	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0024304_34	742738.HMPREF9460_00868	80.9	1.52e-19	Cysteine-rich KTR	N/A
Pfam	UHGV-0024304_34	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0024304_34	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_35	phrog_3584	125.0	6.4e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024304_35	742738.HMPREF9460_00867	127.0	3.54e-33	N/A	N/A
structural_annotation	UHGV-0024304_35	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_41	phrog_1008	57.7	1e-18	DNA methyltransferase	other
UniRef90	UHGV-0024304_41	UniRef90_A0A345KQM6	102.0	7.97e-23	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0024304_41	488538.SAR116_0389	101.0	1.01e-22	N/A	N/A
KOfam	UHGV-0024304_42	K03497	84.4	2e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0024304_42	phrog_27290	339.8	0	N/A	unknown function
UniRef90	UHGV-0024304_42	UniRef90_UPI0003130F10	294.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0024304_42	1007096.BAGW01000033_gene1613	294.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0024304_42	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0024304_42	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0024304_42	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0024304_43	K03496	190.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0024304_43	phrog_164	164.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024304_43	UniRef90_R5EEH2	306.0	0	CobQ/CobB/MinD/ParA nucleotide binding domain protein	N/A
eggNOG-mapper	UHGV-0024304_43	742738.HMPREF9460_00854	203.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0024304_43	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0024304_43	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0024304_43	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0024304_44	K02314	237.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0024304_44	phrog_19	229.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024304_44	UniRef90_A0A3D1V9Y4	229.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0024304_44	663278.Ethha_2283	146.0	2.5e-36	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0024304_44	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0024304_44	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0024304_44	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0024304_44	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_45	phrog_270	125.1	7.5e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024304_45	UniRef90_UPI001F3D92C2	178.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0024304_45	742738.HMPREF9460_00851	169.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0024304_45	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0024304_45	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0024304_45	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024304_47	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024304_49	UniRef90_UPI001C5A4A62	53.1	0.000000188	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0024304_49	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0024304_49	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0024304_49	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0024304_49	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0024304_51	phrog_6499	117.2	7.5e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024304_51	UniRef90_A0A3D4EJF0	127.0	8.6e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024304_51	1415774.U728_1274	106.0	1.92e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0024304_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024304_51	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0024304_51	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0024304_52	K22300	72.0	1.3e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0024304_52	phrog_8	59.0	1.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024304_52	UniRef90_UPI001BB47897	70.5	0.0000000000000213	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0024304_52	693746.OBV_27490	67.8	0.0000000000000414	sequence-specific DNA binding	N/A
Pfam	UHGV-0024304_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024304_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0024304_52	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0024304_55	K07729	62.6	8.5e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0024304_55	phrog_8	67.2	3.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024304_55	UniRef90_UPI000D1E8240	76.6	4.78e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0024304_55	1443125.Z962_p0007	72.8	0.00000000000000417	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0024304_55	retron_type_VI_hth_cluster2_1	41.2	0.000000000049	N/A	Retron
Pfam	UHGV-0024304_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024304_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024304_55	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024304_56	UniRef90_A0A3D3Y4M8	58.2	0.000000394	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0024304_56	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0024304_56	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024304_57	97138.C820_00636	58.5	0.0000000684	N/A	N/A
KOfam	UHGV-0024304_58	K18843	75.7	9e-22	hicB; antitoxin HicB	N/A
PHROG	UHGV-0024304_58	phrog_497	83.4	4e-24	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0024304_58	UniRef90_A0A810Q7W6	196.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0024304_58	641112.ACOK01000116_gene2617	174.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0024304_58	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0024304_58	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0024304_58	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0024304_59	K14059	216.1	0	int; integrase	N/A
PHROG	UHGV-0024304_59	phrog_1	186.2	0	integrase	integration and excision
UniRef90	UHGV-0024304_59	UniRef90_UPI001958C1A8	221.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0024304_59	1297617.JPJD01000022_gene1664	212.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0024304_59	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0024304_59	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024304_59	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024304_59	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024304	Yes	37,189	58	100	1