vOTU vOTU-060993

vOTU: vOTU-060993

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-060993
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00264 → vSUBFAM-00917 → vGENUS-00826 → vSUBGEN-00396 → vOTU-060993
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-448 → CAG-448 sp003150135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0021428
Biosample ID	SAMEA4765653
Genome length (bp)	35,694 bps
CheckV completeness	99.90% (High-quality)
CDS count	48
CDS density	95.03%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-448 → CAG-448 sp003150135	Total connections	173	Host agreement	87.28
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0021428_1	UniRef90_UPI0012AD39DD	54.7	0.00000996	leucine-rich repeat protein	N/A
COG	UHGV-0021428_1	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
PHROG	UHGV-0021428_2	phrog_757	125.5	3e-37	DNA methyltransferase	other
UniRef90	UHGV-0021428_2	UniRef90_A0A374BFJ7	212.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0021428_2	397290.C810_01487	196.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0021428_2	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0021428_2	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0021428_3	phrog_9474	48.9	0.00000000000012	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0021428_3	1226322.HMPREF1545_00016	59.3	0.0000002	HNH endonuclease	N/A
COG	UHGV-0021428_3	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0021428_5	K01160	66.5	6.7e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0021428_5	phrog_34	63.6	3.7e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021428_5	UniRef90_A0A843HIU7	122.0	1.67e-33	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0021428_5	796940.HMPREF9628_00163	96.3	6.17e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0021428_5	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0021428_5	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0021428_5	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0021428_7	phrog_2412	44.0	0.0000000000043	N/A	unknown function
KOfam	UHGV-0021428_8	K06909	98.9	6.6e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0021428_8	phrog_2	113.2	3.8e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0021428_8	UniRef90_A0A0X8VA91	412.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0021428_8	642492.Clole_0814	355.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0021428_8	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0021428_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0021428_8	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0021428_9	phrog_533	175.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0021428_9	411473.RUMCAL_01924	101.0	2.81e-20	N/A	N/A
structural_annotation	UHGV-0021428_9	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0021428_10	K00571	209.3	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0021428_10	phrog_67	198.6	0	DNA methyltransferase	other
UniRef90	UHGV-0021428_10	UniRef90_UPI00055C7461	253.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0021428_10	1508644.SFBmNL_00843	167.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0021428_10	MTase_II_00051	162.0	0	Type II methyltransferase	RM
Pfam	UHGV-0021428_10	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0021428_10	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0021428_10	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0021428_11	phrog_581	69.6	1.4e-21	minor head protein	head and packaging
UniRef90	UHGV-0021428_11	UniRef90_A0A2Z4GUI4	116.0	1.94e-25	Minor capsid protein 2	N/A
Pfam	UHGV-0021428_11	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0021428_11	COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021428_12	UniRef90_R6NCU4	53.9	0.00000803	Putative scaffolding protein	N/A
eggNOG-mapper	UHGV-0021428_13	33035.JPJF01000030_gene2294	176.0	0	N/A	N/A
structural_annotation	UHGV-0021428_13	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021428_19	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0021428_22	K20846	60.7	7e-18	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-0021428_22	phrog_341	65.2	1.3e-18	major tail protein	tail
eggNOG-mapper	UHGV-0021428_22	1121904.ARBP01000055_gene486	70.9	0.00000000241	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0021428_22	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0021428_22	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
PHROG	UHGV-0021428_29	phrog_16490	57.6	2.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0021428_29	1408437.JNJN01000043_gene803	76.6	0.0000000000000279	N/A	N/A
UniRef90	UHGV-0021428_30	UniRef90_A0A345BNU6	146.0	1.96042e-42	Spore surface glycoprotein	N/A
structural_annotation	UHGV-0021428_30	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0021428_35	K14059	204.7	0	int; integrase	N/A
PHROG	UHGV-0021428_35	phrog_1	166.4	0	integrase	integration and excision
UniRef90	UHGV-0021428_35	UniRef90_U2QJL8	211.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0021428_35	1226322.HMPREF1545_00144	211.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0021428_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0021428_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0021428_35	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0021428_37	phrog_8	45.1	0.0000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0021428_37	UniRef90_A0A212JT85	67.0	0.00000000000749	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0021428_37	1045854.WKK_01115	51.6	0.000000758	sequence-specific DNA binding	N/A
Pfam	UHGV-0021428_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021428_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0021428_37	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0021428_44	phrog_155	83.2	3.2e-24	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021428_44	UniRef90_A0A1I7HAF1	179.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0021428_44	1034809.SLUG_08420	64.7	0.00000000104	ERF superfamily	N/A
Pfam	UHGV-0021428_44	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0021428_44	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0021428_45	phrog_6244	42.5	0.000000000013	N/A	unknown function
KOfam	UHGV-0021428_46	K03111	138.2	9.19994e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0021428_46	phrog_44	129.2	2.9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021428_46	UniRef90_A0A316RXZ4	159.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0021428_46	699246.HMPREF0868_1385	119.0	5.83e-32	Single-strand binding protein family	N/A
Pfam	UHGV-0021428_46	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0021428_46	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0021428_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0021428_46	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0021428_46	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021428_47	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0021428	Yes	35,694	55	100	1