vOTU vOTU-061057

vOTU: vOTU-061057

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061057
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02308 → vGENUS-02745 → vSUBGEN-02897 → vOTU-061057
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → RGIG4076 → RGIG4076 sp905198155
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0109316
Biosample ID	N/A
Genome length (bp)	29,746 bps
CheckV completeness	93.78% (High-quality)
CDS count	48
CDS density	92.37%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → RGIG4076 → RGIG4076 sp905198155	Total connections	40	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0109316_1	K07451	51.5	0.000000000000023	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0109316_1	phrog_119	85.2	8.6e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109316_1	UniRef90_A0A2V2GQ57	121.0	2.76e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0109316_1	649747.HMPREF0083_01016	89.0	7.81e-22	HNH nucleases	N/A
Pfam	UHGV-0109316_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0109316_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0109316_1	PF05766,NF008448	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_3	phrog_424	49.4	0.000000000000075	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
COG	UHGV-0109316_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
KOfam	UHGV-0109316_5	K01160	51.7	0.000000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0109316_5	phrog_140	107.7	8.9e-32	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109316_5	UniRef90_UPI001915D0A5	114.0	1.62e-29	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0109316_5	545697.HMPREF0216_02819	110.0	1.32e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0109316_5	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0109316_5	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0109316_5	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_6	phrog_2149	71.2	1.8e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0109316_6	1095750.HMPREF9970_1674	211.0	0	N/A	N/A
structural_annotation	UHGV-0109316_6	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0109316_7	K03111	117.4	2e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0109316_7	phrog_44	117.8	1.1e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109316_7	UniRef90_A0A316T9K6	120.0	7.6e-32	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0109316_7	537013.CLOSTMETH_00062	116.0	5.07e-31	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0109316_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0109316_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0109316_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0109316_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0109316_7	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0109316_8	1507.HMPREF0262_00432	70.9	0.0000000000000726	N/A	N/A
PHROG	UHGV-0109316_17	phrog_1373	42.7	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0109316_17	UniRef90_A0A1C5RLF4	76.6	3.2e-17	Conjugal transfer protein TrbA	N/A
eggNOG-mapper	UHGV-0109316_17	1122947.FR7_2493	50.1	0.000000968	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0109316_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0109316_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0109316_17	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_20	phrog_8	62.4	1.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0109316_20	UniRef90_A0A1C6ARB1	109.0	8.59e-30	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0109316_20	1226322.HMPREF1545_02466	77.8	4.18e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0109316_20	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0109316_20	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109316_23	UniRef90_R6R313	66.2	0.000000000000599	N/A	N/A
eggNOG-mapper	UHGV-0109316_23	1430331.EP10_02425	62.8	0.00000000000254	N/A	N/A
structural_annotation	UHGV-0109316_23	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109316_24	UniRef90_UPI001D0C67E8	79.0	3.92e-16	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0109316_24	999413.HMPREF1094_00245	95.9	3.63e-22	Peptidase S24-like	N/A
COG	UHGV-0109316_24	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0109316_24	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_25	phrog_1914	104.1	1e-31	N/A	unknown function
UniRef90	UHGV-0109316_25	UniRef90_R6DVV5	206.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0109316_25	1160721.RBI_I01604	131.0	3.96e-36	N/A	N/A
Pfam	UHGV-0109316_25	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0109316_25	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0109316_25	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0109316_27	K14059	239.5	0	int; integrase	N/A
PHROG	UHGV-0109316_27	phrog_1	217.6	0	integrase	integration and excision
UniRef90	UHGV-0109316_27	UniRef90_UPI0019585560	246.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0109316_27	1408437.JNJN01000039_gene380	241.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0109316_27	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0109316_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0109316_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0109316_27	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_30	phrog_25567	44.6	0.0000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0109316_30	1235798.C817_04600	66.2	0.00000000000181	N/A	N/A
structural_annotation	UHGV-0109316_30	NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_32	phrog_199	72.8	4.3e-21	holin	lysis
UniRef90	UHGV-0109316_32	UniRef90_UPI00156D4996	118.0	1.39e-30	phage holin family protein	N/A
eggNOG-mapper	UHGV-0109316_32	1160721.RBI_I01565	111.0	7.44e-29	Bacteriophage holin family	N/A
Pfam	UHGV-0109316_32	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0109316_32	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0109316_32	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0109316_32	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0109316_33	K19304	67.4	2.7e-19	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0109316_33	phrog_7767	56.0	5.7e-16	metallo-endopeptidase	other
UniRef90	UHGV-0109316_33	UniRef90_A0A0Q8R129	67.8	0.000000000353	Peptidase M23	N/A
eggNOG-mapper	UHGV-0109316_33	517722.AEUE01000001_gene2537	71.2	0.00000000000239	COG0739 Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-0109316_33	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0109316_33	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0109316_34	phrog_1067	278.9	0	minor head protein	head and packaging
UniRef90	UHGV-0109316_34	UniRef90_A0A316NPB5	436.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0109316_34	1123263.AUKY01000068_gene489	306.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0109316_34	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0109316_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0109316_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0109316_34	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0109316_35	phrog_33	50.8	0.000000000000043	distal tail protein Dit	tail
UniRef90	UHGV-0109316_35	UniRef90_UPI0001668E5D	72.8	0.000000000011	phage tail family protein	N/A
eggNOG-mapper	UHGV-0109316_35	1123263.AUKY01000068_gene490	87.8	5.94e-18	tail component	N/A
COG	UHGV-0109316_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0109316_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0109316_36	K20283	40.7	0.0000000000032	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0109316_36	phrog_10613	68.8	1.2e-19	tail length tape measure protein	tail
UniRef90	UHGV-0109316_36	UniRef90_UPI001C12009F	104.0	5.36e-19	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0109316_36	1160721.RBI_II00528	225.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0109316_36	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0109316_36	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_39	phrog_88	90.5	1.9e-26	major tail protein	tail
UniRef90	UHGV-0109316_39	UniRef90_UPI0018771F27	139.0	3.68e-38	phage tail protein	N/A
NCBIFam	UHGV-0109316_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0109316_39	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0109316_39	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_40	phrog_5	47.4	0.00000000000042	tail completion or Neck1 protein	connector
UniRef90	UHGV-0109316_40	UniRef90_A0A1C6FG30	147.0	4.01052e-42	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0109316_40	908340.HMPREF9406_2573	135.0	2.76e-38	N/A	N/A
structural_annotation	UHGV-0109316_40	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_41	phrog_78	41.3	0.000000000031	tail terminator	connector
eggNOG-mapper	UHGV-0109316_41	1232446.BAIE02000002_gene829	86.7	9.82e-21	N/A	N/A
PHROG	UHGV-0109316_42	phrog_19734	91.6	8.1e-27	N/A	unknown function
UniRef90	UHGV-0109316_42	UniRef90_A0A3R6AW46	105.0	7.47e-27	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0109316_42	1235798.C817_04587	97.1	2.47e-24	N/A	N/A
structural_annotation	UHGV-0109316_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_43	phrog_2550	81.3	6.6e-24	N/A	unknown function
UniRef90	UHGV-0109316_43	UniRef90_UPI0008717716	92.8	9.52e-23	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0109316_43	1226322.HMPREF1545_00117	92.0	3.31e-23	N/A	N/A
structural_annotation	UHGV-0109316_43	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_44	phrog_10	199.4	0	major head protein	head and packaging
UniRef90	UHGV-0109316_44	UniRef90_UPI000679B959	649.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0109316_44	1226322.HMPREF1545_00116	560.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0109316_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0109316_44	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0109316_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0109316_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0109316_44	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0109316_45	K06904	144.0	1.49939e-42	N/A	N/A
PHROG	UHGV-0109316_45	phrog_80	167.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0109316_45	UniRef90_UPI00189B2313	244.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0109316_45	1226322.HMPREF1545_00115	233.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0109316_45	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0109316_45	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0109316_45	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0109316_45	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_46	phrog_12	176.9	0	portal protein	head and packaging
UniRef90	UHGV-0109316_46	UniRef90_A0A1C6H763	589.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0109316_46	1226322.HMPREF1545_00114	543.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0109316_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0109316_46	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0109316_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0109316_46	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_47	phrog_9	310.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0109316_47	UniRef90_R5VJG5	846.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0109316_47	1121428.DESHY_20134___1	761.0	0	Phage Terminase	N/A
Pfam	UHGV-0109316_47	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0109316_47	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0109316_47	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0109316_47	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0109316_48	phrog_361	74.5	1.4e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0109316_48	UniRef90_R5V087	138.0	5.87e-40	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0109316_48	1033744.CAEL01000029_gene1286	80.9	6.11e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-0109316_48	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0109316_48	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0109316	Yes	29,746	54	94	1
UHGV-0188502	No	29,720	54	94	1