vOTU vOTU-061075

vOTU: vOTU-061075

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061075
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00771 → vGENUS-01126 → vSUBGEN-22646 → vOTU-061075
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0009648
Biosample ID	N/A
Genome length (bp)	35,379 bps
CheckV completeness	95.07% (High-quality)
CDS count	58
CDS density	92.18%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	15	Host agreement	73.33
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0009648_5	UniRef90_UPI000F0633F9	54.3	0.0000000442	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0009648_5	693746.OBV_43260	51.6	0.0000000876	N/A	N/A
PHROG	UHGV-0009648_12	phrog_824	151.3	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0009648_12	UniRef90_A0A6N8GXS9	178.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0009648_12	665956.HMPREF1032_00132	157.0	0	VRR_NUC	N/A
Pfam	UHGV-0009648_12	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0009648_13	phrog_24518	71.6	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0009648_13	693746.OBV_25370	90.9	4.74e-20	N/A	N/A
PHROG	UHGV-0009648_14	phrog_38338	87.5	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0009648_14	693746.OBV_25410	127.0	1.81e-36	N/A	N/A
PHROG	UHGV-0009648_15	phrog_8470	254.2	0	N/A	unknown function
UniRef90	UHGV-0009648_15	UniRef90_UPI00195E492B	261.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0009648_15	693746.OBV_25400	270.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0009648_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0009648_15	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_16	phrog_15609	194.9	0	N/A	unknown function
UniRef90	UHGV-0009648_16	UniRef90_UPI00195E441E	95.9	1.08e-18	N/A	N/A
eggNOG-mapper	UHGV-0009648_16	1395513.P343_08065	105.0	2.36e-23	N/A	N/A
Pfam	UHGV-0009648_16	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0009648_16	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0009648_16	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009648_18	UniRef90_A0A417H740	169.0	0	N/A	N/A
Pfam	UHGV-0009648_18	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0009648_18	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_23	phrog_3584	164.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0009648_23	1226322.HMPREF1545_03841	250.0	0	N/A	N/A
structural_annotation	UHGV-0009648_23	PF01446,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009648_25	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_26	phrog_620	139.3	2.29995e-41	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009648_26	UniRef90_A0A810PZK9	157.0	1.4013e-45	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0009648_26	226185.EF_2114	112.0	3.08e-27	DNA methylase	N/A
PADLOC	UHGV-0009648_26	MTase_II_00015	73.1	5.2e-21	Type II methyltransferase	RM
Pfam	UHGV-0009648_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0009648_26	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0009648_26	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-0009648_27	K07319	123.9	1.4e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0009648_27	phrog_498	271.2	0	DNA methyltransferase	other
UniRef90	UHGV-0009648_27	UniRef90_A0A810Q3Z7	363.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0009648_27	693746.OBV_19980	296.0	0	DNA methylase	N/A
PADLOC	UHGV-0009648_27	MTase_II_00015	126.5	0	Type II methyltransferase	RM
Pfam	UHGV-0009648_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0009648_27	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0009648_27	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_28	phrog_309	157.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0009648_28	UniRef90_A0A174GY31	149.0	5.26888e-43	Phage-like protein	N/A
eggNOG-mapper	UHGV-0009648_28	1408437.JNJN01000045_gene597	148.0	3.75548e-43	HNH endonuclease	N/A
Pfam	UHGV-0009648_28	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0009648_28	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0009648_29	K06909	130.1	2e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0009648_29	phrog_2	158.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009648_29	UniRef90_A0A373MY72	549.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0009648_29	397290.C810_05187	502.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0009648_29	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0009648_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0009648_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0009648_29	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_30	phrog_64	132.9	1.7e-39	portal protein	head and packaging
UniRef90	UHGV-0009648_30	UniRef90_A0A285PU84	402.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0009648_30	411468.CLOSCI_00292	80.1	0.000000000000328	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0009648_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0009648_30	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_31	phrog_2468	106.4	4.4e-32	head morphogenesis	head and packaging
UniRef90	UHGV-0009648_31	UniRef90_A0A7X5E1T7	321.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0009648_31	1176423.I6R1H0_9VIRU	80.1	0.000000000000049	Phage Mu protein F like protein	N/A
Pfam	UHGV-0009648_31	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0009648_31	PF21814	N/A	N/A	N/A	DUF6883
structural_annotation	UHGV-0009648_31	PF04233,PF21814,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_33	phrog_5	65.2	1.4e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0009648_33	UniRef90_UPI0015C5E40B	79.7	2.63e-16	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0009648_33	764299.STRIC_1434	68.6	0.00000000000081	N/A	N/A
Pfam	UHGV-0009648_33	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0009648_33	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009648_34	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_35	phrog_283	292.2	0	major head protein	head and packaging
UniRef90	UHGV-0009648_35	UniRef90_A0A1C6I0L7	342.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0009648_35	1499683.CCFF01000014_gene3908	335.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0009648_35	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0009648_35	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
Pfam	UHGV-0009648_37	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0009648_37	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009648_38	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_39	phrog_885	77.1	2e-22	major tail protein	tail
UniRef90	UHGV-0009648_39	UniRef90_A0A843J9F0	168.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0009648_39	1504822.CCNO01000012_gene492	203.0	0	N/A	N/A
structural_annotation	UHGV-0009648_39	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_40	phrog_18646	77.7	1.2e-22	N/A	unknown function
UniRef90	UHGV-0009648_40	UniRef90_B6CXF0	92.0	9.94e-22	Peptidase-colicin	N/A
eggNOG-mapper	UHGV-0009648_40	768704.Desmer_4456	48.9	0.00000896	N/A	N/A
PHROG	UHGV-0009648_41	phrog_6900	124.9	9.8e-37	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0009648_41	1111121.HMPREF1247_0787	190.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0009648_41	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0009648_41	PF20155	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009648_42	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_43	phrog_32744	245.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0009648_43	1120998.AUFC01000030_gene2247	160.0	2.94e-38	N/A	N/A
structural_annotation	UHGV-0009648_43	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
COG	UHGV-0009648_44	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0009648_49	phrog_14030	158.8	0	N/A	unknown function
UniRef90	UHGV-0009648_49	UniRef90_A0A316NTC6	196.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0009648_49	641107.CDLVIII_3774	175.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0009648_49	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0009648_49	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0009648_49	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0009648_49	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_50	phrog_199	66.1	4.1e-19	holin	lysis
UniRef90	UHGV-0009648_50	UniRef90_A0A3C0NPD5	184.0	0	Holin	N/A
eggNOG-mapper	UHGV-0009648_50	742738.HMPREF9460_00365	149.0	5.60519e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0009648_50	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0009648_50	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0009648_50	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0009648_50	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0009648_51	phrog_3754	95.3	6.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0009648_51	476272.RUMHYD_01764	155.0	0	N/A	N/A
PHROG	UHGV-0009648_52	phrog_21718	105.8	3.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0009648_52	476272.RUMHYD_01768	75.5	0.00000000000000366	N/A	N/A
PHROG	UHGV-0009648_53	phrog_22984	74.5	8e-22	N/A	unknown function
PHROG	UHGV-0009648_54	phrog_16490	130.3	7.29999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0009648_54	658655.HMPREF0988_00917	145.0	4.07e-40	N/A	N/A
PHROG	UHGV-0009648_55	phrog_20016	198.3	0	N/A	unknown function
UniRef90	UHGV-0009648_55	UniRef90_A0A285PT46	206.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0009648_55	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-0009648_55	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009648_56	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009648_57	1226322.HMPREF1545_00079	108.0	7.04e-29	N/A	N/A
KOfam	UHGV-0009648_58	K14059	89.3	6.5e-26	int; integrase	N/A
PHROG	UHGV-0009648_58	phrog_1	116.7	2.7e-34	integrase	integration and excision
UniRef90	UHGV-0009648_58	UniRef90_UPI001874116E	399.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0009648_58	1235835.C814_03141	178.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0009648_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0009648_58	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0009648_58	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0009648	Yes	35,379	55	95	1