vOTU vOTU-061087

vOTU: vOTU-061087

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061087
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → RF39 → UBA660
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-00877 → vGENUS-02120 → vSUBGEN-36681 → vOTU-061087
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0008676
Biosample ID	N/A
Genome length (bp)	33,766 bps
CheckV completeness	91.06% (High-quality)
CDS count	61
CDS density	94.04%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	13	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	72	Host agreement	94.44

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0008676_1	phrog_5302	190.6	0	tail protein	tail
UniRef90	UHGV-0008676_1	UniRef90_UPI001951D0C2	154.0	2.63e-38	fibronectin type III domain-containing protein	N/A
eggNOG-mapper	UHGV-0008676_1	935948.KE386495_gene1318	117.0	2.35e-27	N/A	N/A
structural_annotation	UHGV-0008676_1	COG1262	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_2	phrog_18725	77.1	2.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0008676_2	1120746.CCNL01000014_gene2212	70.5	0.00000000000038	N/A	N/A
PHROG	UHGV-0008676_3	phrog_13879	274.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0008676_3	665956.HMPREF1032_03630	220.0	0	N/A	N/A
structural_annotation	UHGV-0008676_3	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_4	phrog_1194	47.7	0.00000000000024	N/A	unknown function
structural_annotation	UHGV-0008676_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_5	phrog_58	171.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0008676_5	UniRef90_UPI000F44D2EE	63.9	0.00000109	tape measure protein	N/A
eggNOG-mapper	UHGV-0008676_5	1158612.I580_01921	106.0	1.54e-20	SLT domain	N/A
COG	UHGV-0008676_5	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008676_7	PF12363	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008676_9	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_10	phrog_78	40.9	0.000000000034	tail terminator	connector
eggNOG-mapper	UHGV-0008676_10	665956.HMPREF1032_03624	62.0	0.000000000176	N/A	N/A
structural_annotation	UHGV-0008676_10	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008676_11	665956.HMPREF1032_03623	79.0	5.86e-16	N/A	N/A
structural_annotation	UHGV-0008676_11	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008676_12	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008676_14	PF12949,PF18885	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008676_15	UniRef90_A0A3D1PN29	270.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-0008676_15	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_16	phrog_172	97.9	1.3e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0008676_16	UniRef90_A0A3D1PKZ2	103.0	9.7e-25	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0008676_16	1280689.AUJC01000003_gene966	75.9	0.0000000000000168	N/A	N/A
Pfam	UHGV-0008676_16	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0008676_16	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_18	phrog_595	49.0	0.00000000000012	head maturation protease	head and packaging
UniRef90	UHGV-0008676_18	UniRef90_R5MSH4	557.0	0	Phage head morphogenesis protein SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-0008676_18	139871.A9D9S7_9VIRU	63.2	0.000000102	Phage Mu protein F like protein	N/A
structural_annotation	UHGV-0008676_18	PF03496,PF04233,MF_04142,NF041404,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_19	phrog_64	185.3	0	portal protein	head and packaging
UniRef90	UHGV-0008676_19	UniRef90_R5MTF8	1009.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0008676_19	665956.HMPREF1032_03614	269.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0008676_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0008676_19	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_20	phrog_30251	570.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0008676_20	UniRef90_R5M9P5	941.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0008676_20	1522092.A0A090EUA8_9CAUD	498.0	0	Pfam:Terminase_6C	N/A
Pfam	UHGV-0008676_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0008676_20	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0008676_20	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
structural_annotation	UHGV-0008676_20	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0008676_21	K07474	118.6	1e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0008676_21	phrog_51	133.7	1.2e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0008676_21	UniRef90_R5MF68	269.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0008676_21	445335.CBN_2993	125.0	1.61e-33	Terminase small subunit	N/A
Pfam	UHGV-0008676_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0008676_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0008676_21	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_22	phrog_1233	85.6	5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0008676_22	1151292.QEW_4538	96.7	1.71e-23	N/A	N/A
PHROG	UHGV-0008676_24	phrog_36	57.6	3.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008676_24	UniRef90_R5MSQ9	143.0	2.40995e-41	DNA-directed RNA polymerase specialized sigma subunit sigma24	N/A
eggNOG-mapper	UHGV-0008676_24	1321779.HMPREF1984_01313	68.6	0.00000000000458	N/A	N/A
Pfam	UHGV-0008676_24	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0008676_24	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0008676_24	PF06530,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008676_31	PF02559,MF_01194,TIGR02097	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_35	phrog_24658	86.4	2.6e-25	N/A	unknown function
UniRef90	UHGV-0008676_35	UniRef90_R7D8J1	76.6	0.00000000000000244	Gp50	N/A
PHROG	UHGV-0008676_38	phrog_1934	141.2	3.30006e-42	N/A	unknown function
UniRef90	UHGV-0008676_38	UniRef90_UPI0005603695	149.0	1.10703e-43	zinc-finger-containing protein	N/A
eggNOG-mapper	UHGV-0008676_38	445972.ANACOL_00149	108.0	2.86e-28	COG NOG19595 non supervised orthologous group	N/A
Pfam	UHGV-0008676_38	PF11672	N/A	N/A	zinc-finger-containing domain	DUF3268
structural_annotation	UHGV-0008676_38	PF11672	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_41	phrog_2245	79.7	4e-23	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0008676_41	1232446.BAIE02000011_gene1613	51.2	0.000000671	N/A	N/A
PHROG	UHGV-0008676_42	phrog_4973	48.7	0.00000000000013	N/A	unknown function
Pfam	UHGV-0008676_42	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0008676_42	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_43	phrog_72	54.3	0.000000000000002	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0008676_43	428127.EUBDOL_01246	104.0	7.18e-26	N/A	N/A
Pfam	UHGV-0008676_43	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0008676_43	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0008676_44	K03111	107.0	3e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0008676_44	phrog_44	120.4	1.6e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008676_44	UniRef90_A0A350H2L8	240.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008676_44	1071073.KI530534_gene778	116.0	2.78e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0008676_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0008676_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0008676_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0008676_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0008676_44	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_47	phrog_298	56.9	1.6e-16	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008676_47	UniRef90_A0A3D5XTJ3	159.0	1.4013e-45	Cas_Cas4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008676_47	1399942.U3PDT7_9CAUD	84.0	2.23e-17	nuclease activity	N/A
Pfam	UHGV-0008676_47	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-0008676_47	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_48	phrog_6244	47.8	0.00000000000033	N/A	unknown function
structural_annotation	UHGV-0008676_48	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_51	phrog_1163	122.4	4.1e-36	N/A	unknown function
UniRef90	UHGV-0008676_51	UniRef90_A0A841X5F7	87.0	2.3e-17	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0008676_51	1042163.BRLA_c031420	105.0	1.21e-24	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0008676_51	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0008676_51	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0008676_51	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0008676_51	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0008676_51	PF09524,PF19808,TIGR02220	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008676_55	UniRef90_UPI001CF844D1	70.1	0.0000000000000379	N/A	N/A
eggNOG-mapper	UHGV-0008676_55	866775.HMPREF9243_0425	67.4	0.0000000000000902	N/A	N/A
Pfam	UHGV-0008676_55	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0008676_55	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0008676_55	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_56	phrog_2967	71.0	1.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008676_56	UniRef90_A0A3B8SNP6	81.3	3.13e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0008676_56	1215915.BN193_09255	70.9	0.000000000000493	Peptidase S24-like	N/A
Pfam	UHGV-0008676_56	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0008676_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0008676_56	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0008676_57	phrog_3707	57.1	3.1e-16	membrane-flanked domain	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0008676_57	UniRef90_K0B3L8	94.4	1.03e-22	bPH_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008676_57	676032.FN3523_1032	57.4	0.00000000614	Bacterial PH domain	N/A
Pfam	UHGV-0008676_57	PF03703	N/A	N/A	Bacterial PH domain	bPH_2
COG	UHGV-0008676_57	COG3428	N/A	N/A	N/A	N/A
KOfam	UHGV-0008676_58	K14059	178.7	0	int; integrase	N/A
PHROG	UHGV-0008676_58	phrog_1	162.2	0	integrase	integration and excision
UniRef90	UHGV-0008676_58	UniRef90_UPI001C00C9CA	162.0	3.51726e-43	site-specific integrase	N/A
eggNOG-mapper	UHGV-0008676_58	1232446.BAIE02000011_gene1633	148.0	1.83e-38	Site-specific recombinase, phage integrase family	N/A
Pfam	UHGV-0008676_58	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0008676_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0008676_58	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0008676_58	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0008676_61	K08384	400.2	0	spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)	N/A
UniRef90	UHGV-0008676_61	UniRef90_R5LKX5	642.0	0	Stage V sporulation protein D	N/A
eggNOG-mapper	UHGV-0008676_61	1385512.N784_07690	382.0	0	Stage V sporulation protein D	N/A
Pfam	UHGV-0008676_61	PF03717	N/A	N/A	Penicillin-binding Protein dimerisation domain	PBP_dimer
Pfam	UHGV-0008676_61	PF00905	N/A	N/A	Penicillin binding protein transpeptidase domain	Transpeptidase
COG	UHGV-0008676_61	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0008676	Yes	33,766	28	91	1
UHGV-0020736	No	32,880	28	89	1
UHGV-1693152	No	14,583	27	39	1