vOTU vOTU-061155

vOTU: vOTU-061155

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061155
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00133 → vSUBFAM-05527 → vGENUS-12192 → vSUBGEN-18241 → vOTU-061155
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0205015
Biosample ID	SAMN00069455
Genome length (bp)	22,069 bps
CheckV completeness	90.22% (High-quality)
CDS count	37
CDS density	91.02%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	702	Host agreement	77.21
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	111	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0205015_1	UniRef90_A0A4D6APN1	54.3	0.00000000392	Resolvase	N/A
eggNOG-mapper	UHGV-0205015_1	1235792.C808_05386	57.4	0.000000000292	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0205015_1	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0205015_1	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0205015_2	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
KOfam	UHGV-0205015_5	K18830	51.0	0.000000000000033	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0205015_5	phrog_8	62.6	9.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205015_5	UniRef90_A0A374N9T4	120.0	9.5e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0205015_5	717605.Theco_0106	75.9	1.03e-16	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0205015_5	retron_type_VI_hth_cluster2_1	40.3	0.000000000087	N/A	Retron
Pfam	UHGV-0205015_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205015_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0205015_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205015_9	UniRef90_A0A374MXG7	146.0	1.54143e-44	XRE family transcriptional regulator	N/A
Pfam	UHGV-0205015_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0205015_10	phrog_119	56.1	5.5e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205015_10	UniRef90_A0A374N9T6	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0205015_10	1235793.C809_01915	123.0	1.29e-34	HNH endonuclease	N/A
COG	UHGV-0205015_10	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0205015_11	1243664.CAVL020000054_gene3027	47.4	0.00000994	N/A	N/A
PHROG	UHGV-0205015_12	phrog_9	396.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0205015_12	UniRef90_A0A374NB45	983.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0205015_12	1235793.C809_01917	729.0	0	Phage Terminase	N/A
Pfam	UHGV-0205015_12	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0205015_12	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0205015_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0205015_12	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_13	phrog_12	180.5	0	portal protein	head and packaging
UniRef90	UHGV-0205015_13	UniRef90_A0A374NAE1	766.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0205015_13	626523.GCWU000342_01027	406.0	0	Portal protein	N/A
Pfam	UHGV-0205015_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0205015_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0205015_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0205015_14	K01358	121.6	8.4e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0205015_14	phrog_94	185.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0205015_14	UniRef90_A0A374NBM3	397.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0205015_14	1203606.HMPREF1526_00979	179.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0205015_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0205015_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0205015_14	PF00574,MF_00444,NF011089,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_15	phrog_10	150.4	1.54143e-44	major head protein	head and packaging
UniRef90	UHGV-0205015_15	UniRef90_A0A374N9V9	729.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0205015_15	1280689.AUJC01000011_gene1521	330.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0205015_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0205015_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0205015_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0205015_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_16	phrog_5223	54.9	0.0000000000000012	neck protein	connector
eggNOG-mapper	UHGV-0205015_16	931626.Awo_c31020	48.1	0.00000641	N/A	N/A
NCBIFam	UHGV-0205015_16	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0205015_16	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_17	phrog_1951	91.9	4.1e-27	head-tail adaptor	connector
UniRef90	UHGV-0205015_17	UniRef90_A0A374MZF9	205.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0205015_17	1414720.CBYM010000040_gene1649	67.4	0.000000000000352	head-tail adaptor	N/A
COG	UHGV-0205015_17	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0205015_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205015_18	UniRef90_UPI001A9B6FBF	163.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0205015_18	1414720.CBYM010000040_gene1650	132.0	1.1e-37	N/A	N/A
structural_annotation	UHGV-0205015_18	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205015_19	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_20	phrog_885	136.9	1.2e-40	major tail protein	tail
UniRef90	UHGV-0205015_20	UniRef90_Q894J4	161.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-0205015_20	1321814.HMPREF9089_00935	175.0	0	N/A	N/A
structural_annotation	UHGV-0205015_20	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_21	phrog_1021	49.5	0.0000000000000033	N/A	unknown function
PHROG	UHGV-0205015_23	phrog_23464	261.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0205015_23	665950.HMPREF1025_02660	184.0	0	phage tail tape measure protein	N/A
COG	UHGV-0205015_23	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0205015_23	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_24	phrog_33	43.9	0.0000000000055	distal tail protein Dit	tail
UniRef90	UHGV-0205015_24	UniRef90_A0A1G5CPA2	115.0	1.13e-27	Phage-related protein	N/A
eggNOG-mapper	UHGV-0205015_24	1246.JMEA01000006_gene51	58.5	0.000000213	phage tail	N/A
COG	UHGV-0205015_24	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0205015_24	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_25	phrog_1067	117.5	7.1e-35	minor head protein	head and packaging
UniRef90	UHGV-0205015_25	UniRef90_A0A348ZBV6	177.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0205015_25	1160721.RBI_I01574	129.0	8.22e-30	Prophage endopeptidase tail	N/A
Pfam	UHGV-0205015_25	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0205015_25	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0205015_25	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0205015_25	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205015_26	UniRef90_A0A374N9Y2	322.0	0	N/A	N/A
Pfam	UHGV-0205015_26	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0205015_26	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205015_28	UniRef90_A0A374MYZ3	179.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0205015_28	1007096.BAGW01000032_gene1580	87.4	2.12e-21	N/A	N/A
PHROG	UHGV-0205015_29	phrog_881	87.2	9e-26	holin	lysis
UniRef90	UHGV-0205015_29	UniRef90_A0A4Q7P349	103.0	1.59e-27	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0205015_29	742740.HMPREF9474_02251	107.0	4.27e-30	Putative phage holin Dp-1	N/A
Pfam	UHGV-0205015_29	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0205015_29	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0205015_30	K01448	48.3	0.00000000000012	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0205015_30	phrog_1794	82.7	6.3e-24	amidase	lysis
UniRef90	UHGV-0205015_30	UniRef90_A0A373KFY8	440.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0205015_30	1519439.JPJG01000059_gene1952	86.7	7.49e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0205015_30	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0205015_30	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0205015_30	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0205015_30	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0205015_31	K14059	155.7	0	int; integrase	N/A
PHROG	UHGV-0205015_31	phrog_1	170.5	0	integrase	integration and excision
UniRef90	UHGV-0205015_31	UniRef90_A0A412L7T7	693.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0205015_31	1540257.JQMW01000011_gene2033	325.0	0	Phage integrase family	N/A
Pfam	UHGV-0205015_31	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0205015_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0205015_31	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0205015_31	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0205015_32	K22299	58.7	1.5e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0205015_32	phrog_8	64.1	3.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205015_32	UniRef90_A0A374NFM5	126.0	5.22e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0205015_32	1196029.ALIM01000022_gene950	67.0	0.000000000000334	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0205015_32	retron_type_VI_hth_cluster2_1	45.9	0.0000000000015	N/A	Retron
Pfam	UHGV-0205015_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205015_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0205015_32	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0205015_34	phrog_10226	173.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0205015_34	431943.CKL_3226	176.0	0	N/A	N/A
KOfam	UHGV-0205015_35	K01356	115.5	7.3e-34	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0205015_35	phrog_4	130.9	1.1e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0205015_35	UniRef90_A0A2N0UXR0	416.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0205015_35	246199.CUS_5911	144.0	2.77999e-40	N/A	N/A
Pfam	UHGV-0205015_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0205015_35	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0205015_35	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0205015_35	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205015_36	UniRef90_A0A2N0UXQ7	127.0	3.61e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0205015_36	78346.BRUM_0420	47.0	0.00000696	N/A	N/A
Pfam	UHGV-0205015_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0205015_36	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0205015	Yes	22,069	41	90	1
UHGV-1494513	No	15,087	42	62	1