vOTU vOTU-061349

vOTU: vOTU-061349

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061349
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-05956 → vGENUS-14090 → vSUBGEN-23321 → vOTU-061349
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia gallistercoris
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0382203
Biosample ID	N/A
Genome length (bp)	40,730 bps
CheckV completeness	99.53% (High-quality)
CDS count	52
CDS density	92.22%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia gallistercoris	Total connections	48	Host agreement	87.5
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0382203_6	UniRef90_UPI0008F8C887	69.7	0.0000000000000336	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0382203_6	445972.ANACOL_00210	56.2	0.00000000118	N/A	N/A
structural_annotation	UHGV-0382203_6	PF20075,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0382203_7	K06400	264.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0382203_7	phrog_95	264.7	0	integrase	integration and excision
UniRef90	UHGV-0382203_7	UniRef90_A0A417HSQ2	333.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0382203_7	1157490.EL26_02935	182.0	0	Recombinase	N/A
Pfam	UHGV-0382203_7	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0382203_7	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0382203_7	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0382203_7	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0382203_8	K14059	163.0	0	int; integrase	N/A
PHROG	UHGV-0382203_8	phrog_1	162.7	0	integrase	integration and excision
UniRef90	UHGV-0382203_8	UniRef90_A0A3D2HVQ9	314.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0382203_8	1226322.HMPREF1545_00144	161.0	4.62428e-44	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0382203_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0382203_8	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0382203_8	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0382203_9	381764.Fnod_0060	55.1	0.00000293	sequence-specific DNA binding	N/A
Pfam	UHGV-0382203_9	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0382203_9	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
eggNOG-mapper	UHGV-0382203_10	1408324.JNJK01000049_gene464	57.0	0.00000136	DNA/RNA non-specific endonuclease	N/A
Pfam	UHGV-0382203_10	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0382203_10	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
KOfam	UHGV-0382203_11	K23779	51.8	0.000000000000019	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0382203_11	phrog_8	41.4	0.000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0382203_11	UniRef90_A0A0D6TLQ0	60.1	0.000000000254	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0382203_11	1206732.BAGD01000272_gene6041	57.0	0.00000000717	Helix-turn-helix domain	N/A
Pfam	UHGV-0382203_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0382203_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0382203_13	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
eggNOG-mapper	UHGV-0382203_15	1007096.BAGW01000023_gene157	54.7	0.00000000536	N/A	N/A
structural_annotation	UHGV-0382203_16	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0382203_17	UniRef90_UPI00070D9F17	65.1	0.0000000000044	N/A	N/A
Pfam	UHGV-0382203_17	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0382203_18	1408324.JNJK01000014_gene1982	95.9	3.44e-21	N/A	N/A
PHROG	UHGV-0382203_21	phrog_997	103.2	1.9e-30	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382203_21	UniRef90_A0A417Z669	77.8	0.00000000000000106	Replication terminator protein	N/A
eggNOG-mapper	UHGV-0382203_21	1203606.HMPREF1526_01889	117.0	2.93e-32	replication terminator protein, phage associated	N/A
PHROG	UHGV-0382203_22	phrog_355	59.6	4.7e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382203_22	UniRef90_A0A3R6TX12	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0382203_22	97138.C820_00250	130.0	8.59e-38	N/A	N/A
Pfam	UHGV-0382203_22	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0382203_22	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_23	phrog_1029	120.5	1.2e-35	N/A	unknown function
eggNOG-mapper	UHGV-0382203_23	411471.SUBVAR_05833	114.0	2e-29	N/A	N/A
structural_annotation	UHGV-0382203_23	COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_24	phrog_22543	41.5	0.000000000012	N/A	unknown function
PHROG	UHGV-0382203_25	phrog_7704	54.3	0.0000000000000021	N/A	unknown function
UniRef90	UHGV-0382203_25	UniRef90_UPI0013EF5B35	59.7	0.00000000563	N/A	N/A
Pfam	UHGV-0382203_25	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0382203_25	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0382203_25	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_26	phrog_3657	281.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0382203_26	1395513.P343_12800	207.0	0	N/A	N/A
PHROG	UHGV-0382203_27	phrog_1227	270.3	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382203_27	UniRef90_A0A1Y3RPZ6	391.0	0	N/A	N/A
eggNOG-mapper	UHGV-0382203_27	1158602.I590_00670	199.0	0	N/A	N/A
Pfam	UHGV-0382203_27	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0382203_27	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0382203_27	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0382203_28	K03111	92.5	7.9e-27	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0382203_28	phrog_44	95.0	1e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382203_28	UniRef90_A0A174E8R6	93.2	1.04e-20	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0382203_28	1519439.JPJG01000082_gene432	93.6	1.41e-21	Single-strand binding protein family	N/A
Pfam	UHGV-0382203_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0382203_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0382203_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
PHROG	UHGV-0382203_29	phrog_16304	89.0	7.9e-26	N/A	unknown function
UniRef90	UHGV-0382203_29	UniRef90_UPI001D074B07	128.0	6.56e-33	N/A	N/A
eggNOG-mapper	UHGV-0382203_29	1121344.JHZO01000003_gene982	110.0	5.95e-27	N/A	N/A
AcrCatalog	UHGV-0382203_29	cluster_14472	97.4	3.54e-26	NA	N/A
Pfam	UHGV-0382203_29	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0382203_29	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0382203_30	K02315	121.7	7.3e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0382203_30	phrog_50	118.0	8.4e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382203_30	UniRef90_A0A4Z0Y679	231.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-0382203_30	411473.RUMCAL_01914	196.0	0	N/A	N/A
Pfam	UHGV-0382203_30	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0382203_30	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0382203_30	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_31	phrog_3301	120.2	1e-35	pyrophosphatase	other
eggNOG-mapper	UHGV-0382203_31	411459.RUMOBE_01042	139.0	1.74994e-41	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-0382203_31	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0382203_31	COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_32	phrog_9958	133.2	1.3e-39	N/A	unknown function
UniRef90	UHGV-0382203_32	UniRef90_A0A6N8GXR0	289.0	0	N/A	N/A
eggNOG-mapper	UHGV-0382203_32	1519439.JPJG01000037_gene956	335.0	0	N/A	N/A
Pfam	UHGV-0382203_32	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0382203_32	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0382203_35	693746.OBV_01730	62.0	0.000000000287	N/A	N/A
structural_annotation	UHGV-0382203_35	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-0382203_36	UniRef90_UPI001C01A488	145.0	2.86986e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0382203_36	561177.ANHYDRO_01396	88.2	1.57e-20	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0382203_36	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0382203_36	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0382203_37	UniRef90_A0A4D7ASB8	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-0382203_37	1519439.JPJG01000011_gene54	317.0	0	N/A	N/A
structural_annotation	UHGV-0382203_37	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_39	phrog_22978	63.1	4.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0382203_39	693746.OBV_01590	444.0	0	N/A	N/A
KOfam	UHGV-0382203_40	K01447	63.5	3.9e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0382203_40	phrog_15001	188.9	0	endolysin	lysis
UniRef90	UHGV-0382203_40	UniRef90_A0A1D8GMZ6	282.0	0	Amidase	N/A
eggNOG-mapper	UHGV-0382203_40	755731.Clo1100_3569	266.0	0	Ami_2	N/A
Pfam	UHGV-0382203_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0382203_40	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0382203_40	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_41	phrog_1129	59.6	4.1e-17	holin	lysis
UniRef90	UHGV-0382203_41	UniRef90_R6H6W8	142.0	1.90016e-42	Putative holin	N/A
eggNOG-mapper	UHGV-0382203_41	1226322.HMPREF1545_00069	110.0	1.62e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0382203_41	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0382203_41	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_42	phrog_1863	63.0	2.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0382203_42	552398.HMPREF0866_01158	87.0	1.05e-21	N/A	N/A
UniRef90	UHGV-0382203_43	UniRef90_A0A521IRB0	68.6	0.00000000000714	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0382203_43	1203606.HMPREF1526_01926	100.0	3.66e-24	N/A	N/A
Pfam	UHGV-0382203_43	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0382203_43	PF14600	N/A	N/A	N/A	N/A
Pfam	UHGV-0382203_45	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
Pfam	UHGV-0382203_45	PF19079	N/A	N/A	Collagen-flanked surface repeat	CFSR
PHROG	UHGV-0382203_46	phrog_156	125.3	3e-37	portal protein	head and packaging
eggNOG-mapper	UHGV-0382203_46	693746.OBV_01670	568.0	0	N/A	N/A
structural_annotation	UHGV-0382203_46	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0382203_48	phrog_422	123.2	2.1e-36	major head protein	head and packaging
UniRef90	UHGV-0382203_48	UniRef90_A0A6A8VJ17	291.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0382203_48	1408437.JNJN01000001_gene1710	200.0	0	N/A	N/A
Pfam	UHGV-0382203_48	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0382203_48	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0382203_50	K06909	140.2	1.79997e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0382203_50	phrog_979	130.4	4.6e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0382203_50	UniRef90_A0A6A8VHX7	506.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0382203_50	693746.OBV_01690	478.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0382203_50	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0382203_50	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0382203_50	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0382203	Yes	40,730	48	100	1