vOTU vOTU-061396

vOTU: vOTU-061396

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061396
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00061 → vGENUS-00150 → vSUBGEN-00290 → vOTU-061396
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1512429
Biosample ID	N/A
Genome length (bp)	40,026 bps
CheckV completeness	96.92% (High-quality)
CDS count	50
CDS density	93.19%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	Total connections	55	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella atypica	Total connections	28	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.92)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1512429_2	phrog_10797	213.7	0	N/A	unknown function
UniRef90	UHGV-1512429_2	UniRef90_A0A0X8K8T8	128.0	6.44e-34	Glycoprotease	N/A
eggNOG-mapper	UHGV-1512429_2	883156.HMPREF9282_01266	149.0	5.67526e-43	N/A	N/A
structural_annotation	UHGV-1512429_2	PF06531	N/A	N/A	N/A	N/A
KOfam	UHGV-1512429_3	K08640	104.2	1.9e-30	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1512429_3	phrog_894	99.4	4e-29	endolysin	lysis
UniRef90	UHGV-1512429_3	UniRef90_A0A496P8E9	278.0	0	N/A	N/A
eggNOG-mapper	UHGV-1512429_3	613026.HRAG_01219	99.4	8.88e-25	N/A	N/A
Pfam	UHGV-1512429_3	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1512429_3	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1512429_3	PF08291,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_5	phrog_23091	217.3	0	N/A	unknown function
structural_annotation	UHGV-1512429_5	PF05105,NF035928	N/A	N/A	N/A	N/A
KOfam	UHGV-1512429_7	K13925	40.7	0.0000000000095	pfbA; plasmin and fibronectin-binding protein A	N/A
UniRef90	UHGV-1512429_7	UniRef90_A0A2S7ZGN5	1226.0	0	Pectate_lyase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1512429_7	1443111.JASG01000004_gene3704	61.6	0.000000925	Pectate lyase superfamily protein	N/A
Pfam	UHGV-1512429_7	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-1512429_7	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-1512429_7	PF05096,PF03906,MF_03008,TIGR03866,COG3204	N/A	N/A	N/A	N/A
KOfam	UHGV-1512429_8	K20478	97.1	1.8e-29	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1512429_8	phrog_9880	261.8	0	N/A	unknown function
UniRef90	UHGV-1512429_8	UniRef90_D1YMD8	3362.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1512429_8	699218.HMPREF0889_0277	469.0	0	N/A	N/A
Pfam	UHGV-1512429_8	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
structural_annotation	UHGV-1512429_9	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_10	phrog_418	72.2	6e-21	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1512429_10	1401067.HMPREF0872_06765	174.0	0	N/A	N/A
structural_annotation	UHGV-1512429_10	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_11	phrog_308	75.5	7.9e-22	internal virion protein	head and packaging
UniRef90	UHGV-1512429_11	UniRef90_UPI001D08FF44	335.0	0	N/A	N/A
Pfam	UHGV-1512429_11	PF11090	N/A	N/A	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
structural_annotation	UHGV-1512429_11	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_12	phrog_376	641.8	0	tail protein	tail
UniRef90	UHGV-1512429_12	UniRef90_A0A3A4JUE0	324.0	0	E1_FCCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1512429_12	1401067.HMPREF0872_06775	648.0	0	N/A	N/A
structural_annotation	UHGV-1512429_12	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_13	phrog_394	167.0	0	tail protein	tail
eggNOG-mapper	UHGV-1512429_13	1401067.HMPREF0872_06780	212.0	0	N/A	N/A
structural_annotation	UHGV-1512429_13	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_15	phrog_427	41.9	0.000000000017	N/A	unknown function
structural_annotation	UHGV-1512429_15	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_16	phrog_212	233.7	0	major head protein	head and packaging
UniRef90	UHGV-1512429_16	UniRef90_A0A239Z8I8	608.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-1512429_16	1401067.HMPREF0872_06795	368.0	0	N/A	N/A
Pfam	UHGV-1512429_16	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1512429_16	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_17	phrog_458	89.6	4.8e-26	protease	other
eggNOG-mapper	UHGV-1512429_17	1401067.HMPREF0872_06800	116.0	6.55e-30	N/A	N/A
PHROG	UHGV-1512429_18	phrog_528	67.1	1.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1512429_18	568816.Acin_1833	61.2	0.0000000000946	N/A	N/A
PHROG	UHGV-1512429_19	phrog_332	464.0	0	head-tail adaptor	connector
UniRef90	UHGV-1512429_19	UniRef90_UPI001D07F371	1096.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1512429_19	1401067.HMPREF0872_06810	594.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1512429_19	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1512429_19	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_21	phrog_5902	253.6	0	N/A	unknown function
UniRef90	UHGV-1512429_21	UniRef90_UPI0018A6EFE4	583.0	0	terminase	N/A
eggNOG-mapper	UHGV-1512429_21	1200557.JHWV01000001_gene277	586.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-1512429_21	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1512429_21	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1512429_22	K07474	130.4	2.5e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1512429_22	phrog_51	134.4	5.30001e-40	terminase small subunit	head and packaging
UniRef90	UHGV-1512429_22	UniRef90_A0A2S7ZGQ0	261.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1512429_22	318464.IO99_00540	118.0	3.17e-32	Terminase small subunit	N/A
Pfam	UHGV-1512429_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1512429_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1512429_22	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_25	phrog_36	48.2	0.0000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-1512429_25	UniRef90_D1YMC4	86.7	9.38e-19	Phage transcriptional regulator, ArpU family	N/A
eggNOG-mapper	UHGV-1512429_25	706434.HMPREF9429_00383	51.2	0.00000482	N/A	N/A
structural_annotation	UHGV-1512429_25	PF07374,TIGR02984	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_27	phrog_21026	63.5	1.3e-18	N/A	unknown function
KOfam	UHGV-1512429_30	K19232	130.5	1.19993e-41	btaE; hyaluronate-binding autotransporter adhesin	N/A
UniRef90	UHGV-1512429_30	UniRef90_UPI001D068F5F	419.0	0	YadA-like family protein	N/A
eggNOG-mapper	UHGV-1512429_30	1128111.HMPREF0870_01786	179.0	0	Hep Hag repeat protein	N/A
Pfam	UHGV-1512429_30	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
Pfam	UHGV-1512429_30	PF05662	N/A	N/A	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
Pfam	UHGV-1512429_30	PF03895	N/A	N/A	YadA-like membrane anchor domain	YadA_anchor
COG	UHGV-1512429_30	COG5295	N/A	N/A	Autotransporter adhesin	N/A
structural_annotation	UHGV-1512429_30	PF03895,NF033478,COG5295	N/A	N/A	N/A	N/A
KOfam	UHGV-1512429_31	K01520	152.4	2.8026e-45	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1512429_31	phrog_135	150.0	8.40779e-45	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1512429_31	UniRef90_UPI001D0616FF	241.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1512429_31	1284686.HMPREF1630_09220	119.0	1.58e-32	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-1512429_31	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1512429_31	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1512429_31	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1512429_31	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1512429_32	PF02796,TIGR04381,COG2771	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1512429_34	PF16857,MF_00273	N/A	N/A	N/A	N/A
KOfam	UHGV-1512429_35	K03111	148.8	5.60519e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1512429_35	phrog_44	128.1	6.5e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1512429_35	UniRef90_UPI001D069DF3	214.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1512429_35	879309.HMPREF9199_0149	208.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1512429_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1512429_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1512429_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1512429_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1512429_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_37	phrog_9804	59.0	7.7e-17	N/A	unknown function
structural_annotation	UHGV-1512429_37	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_38	phrog_5968	202.6	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1512429_38	UniRef90_UPI0019608C6C	405.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1512429_38	565664.EFXG_01794	203.0	0	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-1512429_38	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1512429_38	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1512429_38	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1512429_38	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-1512429_40	K07451	44.9	0.0000000000022	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1512429_40	phrog_7785	42.0	0.000000000017	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1512429_40	UniRef90_UPI001D0937EE	189.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1512429_40	429009.Adeg_0841	50.4	0.00000563	PFAM HNH endonuclease	N/A
Pfam	UHGV-1512429_40	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1512429_40	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1512429_40	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_41	phrog_72	66.3	4.2e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1512429_41	UniRef90_R5BGH3	134.0	1.54e-36	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1512429_41	445972.ANACOL_01825	115.0	5.13e-30	N/A	N/A
PHROG	UHGV-1512429_42	phrog_2324	163.9	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1512429_42	UniRef90_UPI001402D75D	317.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1512429_42	1209989.TepiRe1_1126	139.0	8.44e-39	ERF superfamily	N/A
Pfam	UHGV-1512429_42	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1512429_42	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_43	phrog_674	66.7	6.6e-20	N/A	unknown function
UniRef90	UHGV-1512429_43	UniRef90_UPI000E71DE97	518.0	0	N/A	N/A
eggNOG-mapper	UHGV-1512429_43	1391647.AVSV01000003_gene1789	77.4	0.000000000000186	N/A	N/A
Pfam	UHGV-1512429_43	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1512429_43	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1512429_45	NF008912	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_46	phrog_7735	80.9	1.3e-23	excisionase	integration and excision
UniRef90	UHGV-1512429_46	UniRef90_UPI00195FD229	116.0	8.63e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1512429_46	862517.HMPREF9225_0695	50.4	0.00000109	N/A	N/A
Pfam	UHGV-1512429_46	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1512429_46	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_47	phrog_2967	62.3	7.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1512429_47	UniRef90_UPI001D073245	210.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1512429_47	861450.HMPREF0080_02022	142.0	7.7702e-42	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1512429_47	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1512429_47	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1512429_47	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1512429_49	phrog_20936	111.4	3.8e-33	N/A	unknown function
UniRef90	UHGV-1512429_49	UniRef90_UPI001D086FA7	173.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1512429_49	706434.HMPREF9429_00182	60.1	0.0000000000825	N/A	N/A
Pfam	UHGV-1512429_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1512429_49	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1512429_50	K14059	214.3	0	int; integrase	N/A
PHROG	UHGV-1512429_50	phrog_1	196.0	0	integrase	integration and excision
UniRef90	UHGV-1512429_50	UniRef90_UPI001D0692F2	675.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1512429_50	1232428.CAVO010000003_gene1025	267.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1512429_50	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1512429_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1512429_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1512429_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1512429_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1512429	Yes	40,026	37	97	1
UHGV-0195079	No	40,026	37	97	1
UHGV-0125372	No	39,835	37	96	1
UHGV-0262251	No	39,835	37	96	1