vOTU vOTU-061534

vOTU: vOTU-061534

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061534
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Desulfobacterota_I → Desulfovibrionia → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio fairfieldensis
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-06272 → vGENUS-15469 → vSUBGEN-27010 → vOTU-061534
Host lineage	Bacteria → Desulfobacterota_I
Host range breadth	Phylum
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0042713
Biosample ID	N/A
Genome length (bp)	44,348 bps
CheckV completeness	99.90% (High-quality)
CDS count	63
CDS density	91.18%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Desulfobacterota_I	Total connections	68	Host agreement	64.71
PHIST-predicted host lineage	Bacteria → Desulfobacterota_I → Desulfovibrionia → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio fairfieldensis	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0042713_1	K14059	179.9	0	int; integrase	N/A
PHROG	UHGV-0042713_1	phrog_1	173.7	0	integrase	integration and excision
UniRef90	UHGV-0042713_1	UniRef90_UPI0013EDD93A	462.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0042713_1	665942.HMPREF1022_00104	736.0	0	Phage integrase family	N/A
Pfam	UHGV-0042713_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0042713_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0042713_1	PF00589,PF13495,PF02920,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0042713_3	K07741	59.2	1.4e-16	antB; anti-repressor protein	N/A
PHROG	UHGV-0042713_3	phrog_130	171.5	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0042713_3	UniRef90_G1UND3	563.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0042713_3	665942.HMPREF1022_00106	563.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0042713_3	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0042713_3	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0042713_3	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0042713_3	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0042713_4	665942.HMPREF1022_00107	324.0	0	N/A	N/A
Pfam	UHGV-0042713_5	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0042713_6	phrog_874	176.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0042713_6	665942.HMPREF1022_00109	398.0	0	N/A	N/A
structural_annotation	UHGV-0042713_6	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_7	phrog_954	219.9	0	DNA methyltransferase	other
UniRef90	UHGV-0042713_7	UniRef90_UPI00038F7407	330.0	0	class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0042713_7	665942.HMPREF1022_00110	369.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0042713_7	MTase_II_00074	217.5	0	Type II methyltransferase	RM
Pfam	UHGV-0042713_7	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0042713_7	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0042713_7	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_12	phrog_18900	46.3	0.00000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0042713_12	1304872.JAGC01000005_gene1616	56.2	0.0000000612	N/A	N/A
structural_annotation	UHGV-0042713_12	PF11535,MF_00948,NF008636,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_13	phrog_253	97.8	1.3e-28	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0042713_13	UniRef90_UPI0004260CAC	61.6	0.00000000769	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0042713_13	665942.HMPREF1022_00116	304.0	0	PFAM Gp157 family protein	N/A
Pfam	UHGV-0042713_13	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0042713_13	PF05565,NF002139	N/A	N/A	N/A	N/A
KOfam	UHGV-0042713_14	K03111	161.7	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0042713_14	phrog_44	151.2	5.60519e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0042713_14	UniRef90_G1UNE4	287.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0042713_14	665942.HMPREF1022_00117	287.0	0	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-0042713_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0042713_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0042713_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0042713_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0042713_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_15	phrog_2324	158.4	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0042713_15	UniRef90_A0A562PPD0	134.0	6.82e-36	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0042713_15	665942.HMPREF1022_00118	429.0	0	ERF superfamily	N/A
Pfam	UHGV-0042713_15	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0042713_15	PF04404	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0042713_16	665942.HMPREF1022_00119	137.0	6.16992e-42	N/A	N/A
eggNOG-mapper	UHGV-0042713_17	457398.HMPREF0326_02545	53.1	0.000000224	N/A	N/A
KOfam	UHGV-0042713_18	K21919	80.7	1.8e-23	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0042713_18	phrog_923	95.4	3.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0042713_18	665942.HMPREF1022_00121	186.0	0	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0042713_18	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
NCBIFam	UHGV-0042713_18	NF038108.1	N/A	N/A	Cys-every-fifth RiPP peptide CefA	N/A
COG	UHGV-0042713_18	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0042713_18	PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_20	phrog_19458	63.3	2.6e-24	primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0042713_20	665942.HMPREF1022_00123	595.0	0	nucleotidyltransferase activity	N/A
COG	UHGV-0042713_20	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
KOfam	UHGV-0042713_24	K01356	55.7	0.000000000000001	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0042713_24	phrog_4	83.1	4.7e-24	transcriptional repressor	transcription regulation
UniRef90	UHGV-0042713_24	UniRef90_G1UNF4	499.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0042713_24	665942.HMPREF1022_00127	499.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0042713_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0042713_24	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0042713_24	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0042713_24	PF00717,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0042713_26	UniRef90_UPI001C3B8A40	201.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0042713_26	665942.HMPREF1022_00130	347.0	0	N/A	N/A
Pfam	UHGV-0042713_26	PF06892	N/A	N/A	Phage regulatory protein CII (CP76)	Phage_CP76
PHROG	UHGV-0042713_28	phrog_2514	69.8	2.5e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0042713_28	UniRef90_UPI001D09F98A	154.0	1.63e-40	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0042713_28	665942.HMPREF1022_00132	659.0	0	DnaD domain protein	N/A
COG	UHGV-0042713_28	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0042713_28	PF07106,TIGR01610,COG0735	N/A	N/A	N/A	N/A
UniRef90	UHGV-0042713_29	UniRef90_A0A6J5QW72	80.5	7.16e-18	VRR-NUC domain containing protein	N/A
eggNOG-mapper	UHGV-0042713_29	665942.HMPREF1022_00133	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0042713_31	665942.HMPREF1022_00134	372.0	0	N/A	N/A
PHROG	UHGV-0042713_32	phrog_24780	100.0	1.5e-29	N/A	unknown function
UniRef90	UHGV-0042713_32	UniRef90_G1UNG2	433.0	0	Pesticin domain-containing protein	N/A
eggNOG-mapper	UHGV-0042713_32	665942.HMPREF1022_00135	433.0	0	Bacterial toxin homologue of phage lysozyme, C-term	N/A
Pfam	UHGV-0042713_32	PF16754	N/A	N/A	Bacterial toxin homologue of phage lysozyme, C-term	Pesticin
COG	UHGV-0042713_32	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0042713_32	PF16754,MF_04136,COG3772	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0042713_33	457398.HMPREF0326_02527	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0042713_34	665942.HMPREF1022_00137	178.0	0	N/A	N/A
PHROG	UHGV-0042713_35	phrog_2412	65.4	2.2e-20	N/A	unknown function
UniRef90	UHGV-0042713_35	UniRef90_A0A380K8U5	67.0	0.000000000004	N/A	N/A
eggNOG-mapper	UHGV-0042713_35	665942.HMPREF1022_00138	212.0	0	N/A	N/A
PHROG	UHGV-0042713_36	phrog_5902	250.9	0	N/A	unknown function
UniRef90	UHGV-0042713_36	UniRef90_UPI001C01FE26	572.0	0	terminase	N/A
eggNOG-mapper	UHGV-0042713_36	665942.HMPREF1022_00139	998.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-0042713_36	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0042713_36	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0042713_37	UniRef90_UPI0001E12D4C	374.0	0	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0042713_37	665942.HMPREF1022_00140	481.0	0	N/A	N/A
PHROG	UHGV-0042713_38	phrog_332	474.5	0	head-tail adaptor	connector
UniRef90	UHGV-0042713_38	UniRef90_UPI0001E12D4B	532.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0042713_38	665942.HMPREF1022_00141	1097.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0042713_38	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0042713_38	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_40	phrog_458	145.2	5.10073e-43	protease	other
UniRef90	UHGV-0042713_40	UniRef90_A0A6F8VD24	99.4	3.55e-22	Phage endoprotease	N/A
eggNOG-mapper	UHGV-0042713_40	665942.HMPREF1022_00143	416.0	0	N/A	N/A
PHROG	UHGV-0042713_41	phrog_212	130.5	0	major head protein	head and packaging
UniRef90	UHGV-0042713_41	UniRef90_A0A6J5P2C9	235.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0042713_41	665942.HMPREF1022_00144	679.0	0	N/A	N/A
Pfam	UHGV-0042713_41	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0042713_41	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0042713_42	665942.HMPREF1022_00145	285.0	0	N/A	N/A
Pfam	UHGV-0042713_42	PF21190	N/A	N/A	Bbp16	Bbp16
structural_annotation	UHGV-0042713_42	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_43	phrog_394	122.7	2.3e-36	tail protein	tail
eggNOG-mapper	UHGV-0042713_43	665942.HMPREF1022_00146	404.0	0	N/A	N/A
structural_annotation	UHGV-0042713_43	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_44	phrog_1640	45.9	0.00000000000065	tail protein	tail
eggNOG-mapper	UHGV-0042713_44	665942.HMPREF1022_00147	1006.0	0	N/A	N/A
UniRef90	UHGV-0042713_45	UniRef90_A0A0X8JK75	207.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0042713_45	665942.HMPREF1022_00148	405.0	0	N/A	N/A
structural_annotation	UHGV-0042713_45	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_46	phrog_376	548.6	0	tail protein	tail
UniRef90	UHGV-0042713_46	UniRef90_H8FP71	404.0	0	Bbp13	N/A
eggNOG-mapper	UHGV-0042713_46	665942.HMPREF1022_00149	1587.0	0	N/A	N/A
structural_annotation	UHGV-0042713_46	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
UniRef90	UHGV-0042713_47	UniRef90_UPI0001E12C04	155.0	1.4013e-45	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0042713_47	665942.HMPREF1022_00150	308.0	0	N/A	N/A
structural_annotation	UHGV-0042713_47	PF00583,MF_02210,NF007530,COG0456	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_48	phrog_418	83.8	2.2e-24	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0042713_48	665942.HMPREF1022_00151	364.0	0	N/A	N/A
structural_annotation	UHGV-0042713_48	PF07321,NF041271	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0042713_49	665942.HMPREF1022_00152	1554.0	0	N/A	N/A
UniRef90	UHGV-0042713_50	UniRef90_G1UNI0	1670.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0042713_50	665942.HMPREF1022_00153	1670.0	0	methylase	N/A
Pfam	UHGV-0042713_50	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
COG	UHGV-0042713_50	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
PHROG	UHGV-0042713_51	phrog_684	543.1	0	virion structural protein	head and packaging
UniRef90	UHGV-0042713_51	UniRef90_A0A345BQW7	391.0	0	Structural protein	N/A
eggNOG-mapper	UHGV-0042713_51	665942.HMPREF1022_00154	1795.0	0	N/A	N/A
UniRef90	UHGV-0042713_56	UniRef90_UPI001D0ADCD9	74.3	0.00000000000000127	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0042713_56	665942.HMPREF1022_00158	165.0	0	N/A	N/A
structural_annotation	UHGV-0042713_56	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0042713_57	phrog_2127	138.0	9.70007e-41	anti-repressor	transcription regulation
UniRef90	UHGV-0042713_57	UniRef90_G1UNI6	594.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0042713_57	665942.HMPREF1022_00159	594.0	0	ORF6C domain	N/A
Pfam	UHGV-0042713_57	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0042713_57	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0042713_57	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0042713_57	PF10547,NF033622,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0042713_59	UniRef90_G1UNI7	183.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0042713_59	665942.HMPREF1022_00160	183.0	0	HNH nucleases	N/A
Pfam	UHGV-0042713_59	PF01844	N/A	N/A	HNH endonuclease	HNH
UniRef90	UHGV-0042713_60	UniRef90_UPI000556A5B4	149.0	1.4013e-45	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0042713_60	290317.Cpha266_1441	115.0	3.54e-33	mRNA binding	N/A
Pfam	UHGV-0042713_60	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0042713_60	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
UniRef90	UHGV-0042713_61	UniRef90_UPI000AC3D3A7	106.0	6.05e-29	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0042713_61	665942.HMPREF1022_00161	157.0	0	PFAM Uncharacterised protein family UPF0150	N/A
COG	UHGV-0042713_61	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0042713	Yes	44,348	57	100	1
UHGV-0062862	No	15,969	57	38	1
UHGV-1827374	No	15,969	57	38	1