vOTU vOTU-061645

vOTU: vOTU-061645

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061645
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-14802 → vSUBGEN-25208 → vOTU-061645
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0184340
Biosample ID	SAMEA2737809
Genome length (bp)	37,621 bps
CheckV completeness	99.24% (High-quality)
CDS count	55
CDS density	92.30%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	1002	Host agreement	98.9
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	16	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0184340_1	515620.EUBELI_00516	81.6	1.51e-18	N/A	N/A
Pfam	UHGV-0184340_1	PF19538	N/A	N/A	N/A	DUF6062
KOfam	UHGV-0184340_2	K06334	258.3	0	cotJC; spore coat protein JC	N/A
PHROG	UHGV-0184340_2	phrog_7573	204.8	0	N/A	unknown function
UniRef90	UHGV-0184340_2	UniRef90_A0A174Z0E5	353.0	0	Manganese catalase family protein	N/A
eggNOG-mapper	UHGV-0184340_2	515620.EUBELI_00515	350.0	0	N/A	N/A
Pfam	UHGV-0184340_2	PF05067	N/A	N/A	Manganese containing catalase	Mn_catalase
COG	UHGV-0184340_2	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A
structural_annotation	UHGV-0184340_2	PF05067,MF_00931,TIGR04535,COG3546	N/A	N/A	N/A	N/A
KOfam	UHGV-0184340_3	K02395	49.2	0.000000000000062	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0184340_3	phrog_3513	57.8	1.1e-16	endolysin	lysis
UniRef90	UHGV-0184340_3	UniRef90_R5ZWS5	541.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0184340_3	1139996.OMQ_00128	59.7	0.000000486	defense response to other organism	N/A
Pfam	UHGV-0184340_3	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0184340_3	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0184340_3	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0184340_3	PF08230,NF004974,COG1705	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_4	phrog_1129	74.8	7.9e-22	holin	lysis
UniRef90	UHGV-0184340_4	UniRef90_UPI000E5CE6BF	159.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0184340_4	411461.DORFOR_00721	100.0	7.36e-27	N/A	N/A
Pfam	UHGV-0184340_4	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0184340_4	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_5	phrog_1863	54.9	1.4e-16	N/A	unknown function
UniRef90	UHGV-0184340_5	UniRef90_UPI001D0865D2	83.2	3.17e-19	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0184340_5	1226322.HMPREF1545_04027	83.6	2.94e-20	N/A	N/A
eggNOG-mapper	UHGV-0184340_6	476272.RUMHYD_01994	63.2	0.0000000516	N/A	N/A
PHROG	UHGV-0184340_8	phrog_6616	346.8	0	tail protein	tail
UniRef90	UHGV-0184340_8	UniRef90_UPI001BBF59EA	261.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0184340_8	1121866.AUGK01000003_gene1439	249.0	0	Phage minor structural protein	N/A
COG	UHGV-0184340_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0184340_8	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_9	phrog_1194	53.2	0.000000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0184340_9	33035.JPJF01000093_gene2242	82.8	8.2e-19	N/A	N/A
structural_annotation	UHGV-0184340_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_10	phrog_1535	230.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0184340_10	UniRef90_A0A1C5PIN9	398.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0184340_10	33035.JPJF01000093_gene2243	343.0	0	phage tail tape measure protein	N/A
COG	UHGV-0184340_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0184340_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_11	phrog_8355	60.0	2.8e-17	N/A	unknown function
UniRef90	UHGV-0184340_11	UniRef90_UPI0006BBA9AA	68.6	0.000000000000333	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0184340_11	1151292.QEW_2424	71.6	7.6e-16	N/A	N/A
PHROG	UHGV-0184340_12	phrog_8300	66.3	4.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0184340_12	1151292.QEW_2425	59.3	0.000000000613	N/A	N/A
structural_annotation	UHGV-0184340_12	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_13	phrog_820	111.2	7e-33	major tail protein	tail
UniRef90	UHGV-0184340_13	UniRef90_T3DDR1	181.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0184340_13	1151292.QEW_2426	181.0	0	N/A	N/A
structural_annotation	UHGV-0184340_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_14	phrog_2595	89.0	4.7e-26	head-tail connector protein	connector
UniRef90	UHGV-0184340_14	UniRef90_UPI001D068DAC	141.0	1.07e-40	minor capsid protein	N/A
eggNOG-mapper	UHGV-0184340_14	742740.HMPREF9474_03510	132.0	5.59e-38	N/A	N/A
Pfam	UHGV-0184340_14	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0184340_14	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_15	phrog_556	53.3	0.0000000000000044	minor head protein	head and packaging
eggNOG-mapper	UHGV-0184340_15	742740.HMPREF9474_03509	140.0	5.04005e-41	N/A	N/A
PHROG	UHGV-0184340_16	phrog_8710	125.6	1.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-0184340_16	742740.HMPREF9474_03508	123.0	4.07e-35	N/A	N/A
structural_annotation	UHGV-0184340_16	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_17	phrog_541	69.2	6.2e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0184340_17	1304866.K413DRAFT_0783	147.0	3.92364e-44	N/A	N/A
PHROG	UHGV-0184340_19	phrog_422	211.1	0	major head protein	head and packaging
UniRef90	UHGV-0184340_19	UniRef90_W0U896	209.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0184340_19	1121947.AUHK01000002_gene935	217.0	0	N/A	N/A
structural_annotation	UHGV-0184340_19	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_20	phrog_2303	133.3	1.8e-39	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0184340_20	742740.HMPREF9474_03504	140.0	2.61e-38	N/A	N/A
structural_annotation	UHGV-0184340_20	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_22	phrog_581	248.2	0	minor head protein	head and packaging
UniRef90	UHGV-0184340_22	UniRef90_A0A413YU28	668.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0184340_22	33035.JPJF01000093_gene2255	430.0	0	N/A	N/A
Pfam	UHGV-0184340_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0184340_22	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0184340_22	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_23	phrog_533	285.2	0	portal protein	head and packaging
UniRef90	UHGV-0184340_23	UniRef90_A0A413YU90	931.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0184340_23	33035.JPJF01000093_gene2257	546.0	0	N/A	N/A
structural_annotation	UHGV-0184340_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0184340_24	K06909	90.0	3.3e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0184340_24	phrog_2	66.1	7.5e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0184340_24	UniRef90_A0A413YU24	935.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0184340_24	1282664.H354_06621	523.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0184340_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0184340_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0184340_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0184340_25	K07474	149.6	3.22299e-44	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0184340_25	phrog_51	150.9	5.60519e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0184340_25	UniRef90_A0A356C6K0	311.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0184340_25	509191.AEDB02000023_gene3615	162.0	0	Terminase small subunit	N/A
Pfam	UHGV-0184340_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0184340_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0184340_25	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_27	phrog_36	65.3	1.2e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0184340_27	397290.C810_01391	116.0	2.44e-31	N/A	N/A
structural_annotation	UHGV-0184340_27	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_28	phrog_625	66.5	2e-19	N/A	unknown function
UniRef90	UHGV-0184340_28	UniRef90_A0A413YU40	237.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0184340_28	397290.C810_01502	130.0	3.98e-37	N/A	N/A
structural_annotation	UHGV-0184340_28	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_29	phrog_20593	76.4	3.1e-22	N/A	unknown function
PHROG	UHGV-0184340_32	phrog_2118	105.6	4.6e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184340_32	UniRef90_A0A2U2EKN9	223.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0184340_32	1235799.C818_02668	172.0	0	endonuclease activity	N/A
Pfam	UHGV-0184340_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0184340_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0184340_32	PF13395,TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_36	phrog_15077	93.7	3.5e-27	N/A	unknown function
UniRef90	UHGV-0184340_36	UniRef90_A0A174WLY0	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184340_36	483218.BACPEC_01165	214.0	0	N/A	N/A
structural_annotation	UHGV-0184340_36	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_37	phrog_8470	268.7	0	N/A	unknown function
UniRef90	UHGV-0184340_37	UniRef90_UPI00164C094F	189.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0184340_37	483218.BACPEC_01166	379.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0184340_37	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0184340_37	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0184340_38	483218.BACPEC_01167	188.0	0	N/A	N/A
structural_annotation	UHGV-0184340_40	PF19962,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0184340_41	K03469	70.0	5e-20	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0184340_41	phrog_531	64.8	1.4e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184340_41	UniRef90_A0A413YU26	274.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0184340_41	1121447.JONL01000002_gene2134	76.3	0.00000000000000163	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0184340_41	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0184340_41	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0184340_41	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_42	phrog_3584	163.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0184340_42	641107.CDLVIII_1314	151.0	3.06044e-42	N/A	N/A
structural_annotation	UHGV-0184340_42	PF21578	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184340_46	COG1321	N/A	N/A	N/A	N/A
UniRef90	UHGV-0184340_48	UniRef90_A0A413YU34	130.0	3.31e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0184340_48	706433.HMPREF9430_01294	80.1	5.16e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0184340_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0184340_48	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0184340_49	K22299	64.2	3e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0184340_49	phrog_8	75.8	8.1e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0184340_49	UniRef90_A0A413YU20	253.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0184340_49	553973.CLOHYLEM_07297	89.4	2.29e-21	Transcriptional	N/A
PADLOC	UHGV-0184340_49	retron_type_VI_hth_cluster2_1	53.4	0.000000000000005	N/A	Retron
Pfam	UHGV-0184340_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0184340_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0184340_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_50	phrog_20936	50.5	0.000000000000038	N/A	unknown function
UniRef90	UHGV-0184340_50	UniRef90_UPI0013E038FD	52.8	0.000000174	ImmA/IrrE family metallo-endopeptidase	N/A
structural_annotation	UHGV-0184340_50	PF06114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0184340_51	UniRef90_UPI001C10185D	161.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0184340_51	1123263.AUKY01000072_gene2115	132.0	2.88e-36	N/A	N/A
structural_annotation	UHGV-0184340_51	PF13424,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_52	phrog_2158	188.7	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0184340_52	UniRef90_B0MB90	249.0	0	Abi-like protein	N/A
eggNOG-mapper	UHGV-0184340_52	411490.ANACAC_00817	249.0	0	Abi-like protein	N/A
PADLOC	UHGV-0184340_52	AbiD	128.2	1.6e-37	AbiD	Abi
Pfam	UHGV-0184340_52	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0184340_52	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0184340_52	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0184340_53	K06400	372.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0184340_53	phrog_95	362.9	0	integrase	integration and excision
UniRef90	UHGV-0184340_53	UniRef90_A0A413YU13	907.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0184340_53	411462.DORLON_00823	456.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0184340_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0184340_53	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0184340_53	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0184340_53	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0184340_53	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0184340_54	phrog_5763	86.2	4.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0184340_54	1033744.CAEL01000026_gene1411	111.0	2.92e-26	N/A	N/A
PHROG	UHGV-0184340_55	phrog_1281	131.5	3.9e-39	N/A	unknown function
UniRef90	UHGV-0184340_55	UniRef90_UPI00164A9B39	149.0	2.84464e-43	N/A	N/A
eggNOG-mapper	UHGV-0184340_55	1508644.SFBmNL_01513	143.0	9.3901e-42	N/A	N/A
Pfam	UHGV-0184340_55	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0184340_55	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184340_55	PF13274,COG3600	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0184340	Yes	37,621	37	99	1
UHGV-0073412	No	17,835	39	47	1