vOTU vOTU-061836

vOTU: vOTU-061836

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061836
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00478 → vGENUS-16370 → vSUBGEN-29401 → vOTU-061836
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0207402
Biosample ID	N/A
Genome length (bp)	39,796 bps
CheckV completeness	93.65% (High-quality)
CDS count	61
CDS density	93.01%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	14	Host agreement	71.43
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0207402_1	1095750.HMPREF9970_1674	95.5	3.14e-23	N/A	N/A
KOfam	UHGV-0207402_2	K03111	134.2	1.5e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0207402_2	phrog_44	131.1	8.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207402_2	UniRef90_G4L1H2	160.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0207402_2	693746.OBV_19910	160.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0207402_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0207402_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0207402_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0207402_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0207402_2	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_3	phrog_7566	94.7	5.6e-28	N/A	unknown function
UniRef90	UHGV-0207402_3	UniRef90_A0A3D0HNX4	77.4	1.69e-16	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0207402_3	508419.F8J187_9CAUD	105.0	2.2e-28	N/A	N/A
PHROG	UHGV-0207402_4	phrog_72	63.2	4.2e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207402_4	UniRef90_A0A8D9PDS2	175.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0207402_4	445972.ANACOL_01825	160.0	0	N/A	N/A
structural_annotation	UHGV-0207402_4	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_5	phrog_7838	147.3	9.94922e-44	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207402_5	UniRef90_A0A8D9UGW3	278.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0207402_5	742767.HMPREF9456_02052	181.0	0	N/A	N/A
structural_annotation	UHGV-0207402_5	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_7	phrog_4973	44.6	0.0000000000021	N/A	unknown function
Pfam	UHGV-0207402_7	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0207402_7	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
COG	UHGV-0207402_8	COG2824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207402_9	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207402_12	UniRef90_UPI001EDEB2FF	83.2	3.6e-19	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0207402_12	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207402_13	UniRef90_UPI0018A07F89	50.4	0.00000255	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0207402_13	411473.RUMCAL_01355	51.6	0.000000692	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0207402_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0207402_13	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207402_14	UniRef90_UPI0006850BB0	83.6	2.76e-18	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0207402_14	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0207402_14	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0207402_14	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_17	phrog_33872	74.8	2.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0207402_17	693746.OBV_19740	65.9	0.000000000000966	N/A	N/A
Pfam	UHGV-0207402_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0207402_18	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0207402_19	K14059	216.2	0	int; integrase	N/A
PHROG	UHGV-0207402_19	phrog_1	184.9	0	integrase	integration and excision
UniRef90	UHGV-0207402_19	UniRef90_U2QJL8	455.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0207402_19	1226322.HMPREF1545_00144	455.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0207402_19	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0207402_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0207402_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0207402_19	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207402_20	UniRef90_A0A7M1RS47	59.3	0.0000000404	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0207402_20	1408437.JNJN01000043_gene801	80.1	2.28e-16	N/A	N/A
structural_annotation	UHGV-0207402_22	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_25	phrog_22978	1188.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0207402_25	1410650.JHWL01000003_gene2814	297.0	0	N/A	N/A
Pfam	UHGV-0207402_25	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-0207402_26	1519439.JPJG01000060_gene1904	79.0	0.0000000000012	N/A	N/A
Pfam	UHGV-0207402_27	PF16526	N/A	N/A	C-terminal leucine zipper domain of cyclic nucleotide-gated channels	CLZ
PHROG	UHGV-0207402_28	phrog_511	230.1	0	internal virion protein	head and packaging
UniRef90	UHGV-0207402_28	UniRef90_A0A8D9UH72	532.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0207402_28	1226322.HMPREF1545_00785	346.0	0	N/A	N/A
structural_annotation	UHGV-0207402_28	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_29	phrog_12105	107.5	8.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0207402_29	1226322.HMPREF1545_03850	66.6	0.0000000000025	N/A	N/A
KOfam	UHGV-0207402_30	K08640	100.9	2.1e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0207402_30	phrog_894	108.1	1e-31	endolysin	lysis
UniRef90	UHGV-0207402_30	UniRef90_K1TJK4	221.0	0	Peptidase_M15_3 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0207402_30	1235797.C816_04171	200.0	0	Peptidase M15	N/A
Pfam	UHGV-0207402_30	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0207402_30	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207402_30	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_31	phrog_18955	68.5	7.3e-20	N/A	unknown function
UniRef90	UHGV-0207402_31	UniRef90_UPI00164D2830	382.0	0	phosphodiester glycosidase family protein	N/A
Pfam	UHGV-0207402_31	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0207402_31	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
structural_annotation	UHGV-0207402_31	PF09992,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_33	phrog_1129	71.1	1.1e-20	holin	lysis
UniRef90	UHGV-0207402_33	UniRef90_A0A6A8VHY5	138.0	5.54003e-41	Enolase	N/A
eggNOG-mapper	UHGV-0207402_33	1226322.HMPREF1545_00069	127.0	1.78e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0207402_33	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0207402_33	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_34	phrog_1863	63.2	2.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0207402_34	748224.HMPREF9436_00408	104.0	1.45e-28	N/A	N/A
eggNOG-mapper	UHGV-0207402_35	1226322.HMPREF1545_00064	72.0	0.0000000000147	N/A	N/A
structural_annotation	UHGV-0207402_35	PF20623	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207402_36	742733.HMPREF9469_05009	48.5	0.00000866	N/A	N/A
PHROG	UHGV-0207402_37	phrog_13589	148.9	2.66247e-44	N/A	unknown function
eggNOG-mapper	UHGV-0207402_37	428125.CLOLEP_01434	221.0	0	N/A	N/A
PHROG	UHGV-0207402_40	phrog_1357	262.7	0	major head protein	head and packaging
UniRef90	UHGV-0207402_40	UniRef90_UPI001D02EBA7	464.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0207402_40	1203606.HMPREF1526_02746	347.0	0	N/A	N/A
Pfam	UHGV-0207402_40	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0207402_40	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0207402_40	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_41	phrog_13908	233.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0207402_41	1410650.JHWL01000003_gene2831	108.0	1.23e-24	N/A	N/A
KOfam	UHGV-0207402_42	K07584	61.1	2.1e-17	N/A	N/A
PHROG	UHGV-0207402_42	phrog_4478	58.3	9.4e-17	peptidase	other
UniRef90	UHGV-0207402_42	UniRef90_UPI0005504E05	62.8	0.000000000136	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0207402_42	580331.Thit_0852	59.3	0.000000000561	Cysteine protease Prp	N/A
Pfam	UHGV-0207402_42	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0207402_42	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207402_42	PF04327,NF011125,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_43	phrog_156	320.5	0	portal protein	head and packaging
UniRef90	UHGV-0207402_43	UniRef90_A0A8D9UH10	621.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0207402_43	748224.HMPREF9436_02547	506.0	0	N/A	N/A
structural_annotation	UHGV-0207402_43	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0207402_44	K06909	92.4	5.6e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0207402_44	phrog_979	180.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0207402_44	UniRef90_UPI001BB47C17	780.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0207402_44	748224.HMPREF9436_01395	592.0	0	Terminase-like family	N/A
Pfam	UHGV-0207402_44	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0207402_44	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0207402_44	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_45	phrog_606	81.3	1.3e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0207402_45	UniRef90_UPI00195648BB	169.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0207402_45	397290.C810_05185	137.0	3.01e-39	DNA-packaging protein gp3	N/A
Pfam	UHGV-0207402_45	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0207402_45	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0207402_47	K07726	40.6	0.000000000043	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0207402_47	phrog_25567	48.1	0.00000000000015	N/A	unknown function
UniRef90	UHGV-0207402_47	UniRef90_UPI00164AED9E	114.0	1.06e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0207402_47	1235798.C817_04600	85.9	2.91e-20	N/A	N/A
Pfam	UHGV-0207402_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0207402_47	NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207402_48	UniRef90_A0A7G9WJD7	117.0	8.64e-30	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0207402_48	742738.HMPREF9460_00886	152.0	1.12104e-44	N/A	N/A
Pfam	UHGV-0207402_48	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
structural_annotation	UHGV-0207402_48	TIGR03826	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207402_49	UniRef90_A0A1C6J963	112.0	3.08e-31	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0207402_49	1226322.HMPREF1545_00039	70.9	0.00000000000000218	sequence-specific DNA binding	N/A
Pfam	UHGV-0207402_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0207402_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0207402_49	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207402_50	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
Pfam	UHGV-0207402_51	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-0207402_51	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0207402_51	PF13556,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207402_54	UniRef90_A0A8D9PDT5	58.9	0.00000000494	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0207402_55	phrog_599	43.6	0.0000000000063	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0207402_55	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0207402_55	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
COG	UHGV-0207402_55	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0207402_55	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0207402_56	phrog_3136	131.2	3.7e-39	N/A	unknown function
UniRef90	UHGV-0207402_56	UniRef90_A0A3D0HBD2	135.0	2.58e-37	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0207402_56	642492.Clole_1416	57.4	0.0000000236	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0207402_56	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0207402_56	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207402_58	1105031.HMPREF1141_2783	60.5	0.0000000477	N/A	N/A
KOfam	UHGV-0207402_60	K01160	62.4	1.3e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0207402_60	phrog_140	120.1	1.5e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207402_60	UniRef90_A0A354YVN8	104.0	2.84e-26	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0207402_60	883110.HMPREF9260_00672	99.8	4.65e-25	holliday junction resolvase	N/A
Pfam	UHGV-0207402_60	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0207402_60	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0207402_60	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207402_61	1125725.HMPREF1325_1312	58.5	0.00000000062	N-4 methylation of cytosine	N/A
COG	UHGV-0207402_61	COG0863	N/A	N/A	DNA modification methylase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0207402	Yes	39,796	57	94	1