vOTU vOTU-061844

vOTU: vOTU-061844

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-061844
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-00066 → vSUBGEN-30208 → vOTU-061844
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0096193
Biosample ID	SAMEA3708622
Genome length (bp)	56,568 bps
CheckV completeness	98.22% (High-quality)
CDS count	99
CDS density	85.36%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	742	Host agreement	95.42
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0096193_1	K24213	40.9	0.000000000016	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0096193_1	phrog_10972	50.8	0.000000000000019	tail fiber protein	tail
UniRef90	UHGV-0096193_1	UniRef90_UPI0018835F0C	393.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0096193_1	476272.RUMHYD_00002	94.4	1.73e-17	N/A	N/A
Pfam	UHGV-0096193_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0096193_1	PF16640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_3	PF07870,MF_01506	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_5	phrog_1281	87.9	1.1e-25	N/A	unknown function
UniRef90	UHGV-0096193_5	UniRef90_UPI00130E304C	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-0096193_5	1321815.HMPREF9193_02066	119.0	1.01e-32	N/A	N/A
Pfam	UHGV-0096193_5	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0096193_5	COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_9	phrog_16490	107.3	2.9e-40	N/A	unknown function
eggNOG-mapper	UHGV-0096193_9	1408437.JNJN01000043_gene803	163.0	0	N/A	N/A
eggNOG-mapper	UHGV-0096193_10	1408437.JNJN01000043_gene802	123.0	1.11e-34	N/A	N/A
eggNOG-mapper	UHGV-0096193_11	1408437.JNJN01000043_gene801	86.3	3.99e-18	N/A	N/A
structural_annotation	UHGV-0096193_12	NF010188	N/A	N/A	N/A	N/A
KOfam	UHGV-0096193_13	K13525	127.5	4.6e-38	VCP, CDC48; transitional endoplasmic reticulum ATPase	N/A
PHROG	UHGV-0096193_13	phrog_3757	204.5	0	N/A	unknown function
UniRef90	UHGV-0096193_13	UniRef90_A0A4Z0Y6M2	351.0	0	ATP-dependent zinc metalloprotease FtsH 3	N/A
eggNOG-mapper	UHGV-0096193_13	768710.DesyoDRAFT_1087	210.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-0096193_13	IetA_00002	188.7	0	NA	ietAS
Pfam	UHGV-0096193_13	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-0096193_13	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-0096193_13	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_14	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-0096193_16	K03496	236.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0096193_16	phrog_164	161.7	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096193_16	UniRef90_A0A1C6BS15	211.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-0096193_16	1408423.JHYA01000021_gene392	189.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-0096193_16	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0096193_16	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0096193_16	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_18	phrog_4402	105.3	5.8e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096193_18	UniRef90_A0A0H5Q331	290.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0096193_18	999413.HMPREF1094_04438	124.0	7.06e-30	Initiator Replication protein	N/A
Pfam	UHGV-0096193_18	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0096193_18	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0096193_18	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0096193_18	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096193_19	UniRef90_A0A2A7AM70	180.0	0	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0096193_19	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_23	phrog_8	43.1	0.0000000000094	transcriptional regulator	transcription regulation
UniRef90	UHGV-0096193_23	UniRef90_UPI001D05D211	74.3	0.00000000000000661	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0096193_23	693746.OBV_43290	63.2	0.0000000000459	addiction module antidote protein HigA	N/A
COG	UHGV-0096193_23	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0096193_23	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096193_24	UniRef90_UPI001956DCC9	72.0	0.00000000000000253	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0096193_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0096193_24	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_25	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_27	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-0096193_29	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0096193_30	PF14143	N/A	N/A	N/A	N/A
KOfam	UHGV-0096193_31	K07738	41.5	0.000000000022	nrdR; transcriptional repressor NrdR	N/A
eggNOG-mapper	UHGV-0096193_31	1165096.ARWF01000001_gene689	49.3	0.00000205	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
Pfam	UHGV-0096193_31	PF01096	N/A	N/A	Transcription factor S-II (TFIIS)	TFIIS_C
COG	UHGV-0096193_31	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0096193_31	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_33	phrog_2872	239.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096193_33	UniRef90_A0A8J6JIF1	268.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0096193_33	754027.HMPREF9554_00709	210.0	0	N/A	N/A
Pfam	UHGV-0096193_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0096193_33	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_34	phrog_18107	67.9	2.1e-19	N/A	unknown function
UniRef90	UHGV-0096193_34	UniRef90_UPI00058F46CC	84.7	3.37e-17	N/A	N/A
eggNOG-mapper	UHGV-0096193_34	903814.ELI_1274	150.0	1.28919e-43	N/A	N/A
structural_annotation	UHGV-0096193_34	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_36	phrog_757	171.8	0	DNA methyltransferase	other
UniRef90	UHGV-0096193_36	UniRef90_UPI001C00B13F	442.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0096193_36	748224.HMPREF9436_03069	322.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0096193_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0096193_36	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_37	phrog_35094	89.5	5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0096193_37	457424.BFAG_02409	122.0	2.3e-35	N/A	N/A
PHROG	UHGV-0096193_39	phrog_843	60.6	2e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096193_39	UniRef90_UPI001159D907	112.0	2.5e-28	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0096193_39	929506.CbC4_1203	107.0	4.73e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0096193_39	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_47	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096193_48	UniRef90_UPI0012DD33A2	249.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0096193_48	1321778.HMPREF1982_02288	185.0	0	restriction endonuclease	N/A
PADLOC	UHGV-0096193_48	MTase_II_00176	144.8	0	Type II methyltransferase	RM
COG	UHGV-0096193_48	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-0096193_51	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096193_56	UniRef90_UPI001AD832E5	102.0	4.9e-27	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0096193_56	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0096193_56	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_57	phrog_15768	100.6	1.8e-29	N/A	unknown function
UniRef90	UHGV-0096193_57	UniRef90_E2ZNS6	83.2	0.0000000000000012	N/A	N/A
eggNOG-mapper	UHGV-0096193_57	748224.HMPREF9436_03357	83.2	2.02e-16	N/A	N/A
Pfam	UHGV-0096193_57	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0096193_57	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0096193_58	K02314	208.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0096193_58	phrog_19	221.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096193_58	UniRef90_UPI001CBC4B63	417.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0096193_58	1203606.HMPREF1526_01325	158.0	5.82001e-41	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0096193_58	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0096193_58	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0096193_58	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_59	phrog_419	112.3	5.3e-33	N/A	unknown function
UniRef90	UHGV-0096193_59	UniRef90_A6MAI4	153.0	0	Gp119	N/A
eggNOG-mapper	UHGV-0096193_59	768486.EHR_02665	157.0	0	N/A	N/A
structural_annotation	UHGV-0096193_59	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_61	phrog_434	45.0	0.0000000000019	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0096193_61	1519439.JPJG01000044_gene958	51.2	0.000000279	N/A	N/A
structural_annotation	UHGV-0096193_67	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
KOfam	UHGV-0096193_68	K07741	67.2	6.1e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-0096193_68	phrog_130	224.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0096193_68	UniRef90_A0A1Y4EUA0	259.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0096193_68	1289596.M1PKL6_9CAUD	249.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0096193_68	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0096193_68	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0096193_68	PF02498,PF03374,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_69	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096193_71	UniRef90_UPI001C02D1DF	58.9	0.000000000714	winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0096193_71	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0096193_72	K14060	94.7	1.3e-27	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0096193_72	phrog_125	130.8	1e-38	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0096193_72	UniRef90_UPI001A9B5A42	241.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0096193_72	1443122.Z958_05795	160.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0096193_72	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0096193_72	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0096193_72	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_74	NF009949	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_76	phrog_38	155.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0096193_76	UniRef90_A0A3D4KYF7	963.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0096193_76	1232453.BAIF02000058_gene1623	392.0	0	TIGRFAM Phage	N/A
COG	UHGV-0096193_76	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_76	PF05203,PF17289,MF_04147,MF_01420,NF033889,NF007072,COG5362,COG1372	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_78	phrog_64	148.6	3.36312e-44	portal protein	head and packaging
UniRef90	UHGV-0096193_78	UniRef90_A0A371ILT4	334.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0096193_78	1121866.AUGK01000003_gene1429	276.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0096193_78	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0096193_78	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_81	phrog_29	165.5	0	major head protein	head and packaging
UniRef90	UHGV-0096193_81	UniRef90_A0A2Z4QBB4	345.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0096193_81	476272.RUMHYD_01946	238.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0096193_81	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0096193_81	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096193_82	UniRef90_R6N215	81.6	7.46e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0096193_82	TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0096193_83	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0096193_84	476272.RUMHYD_01963	56.6	0.00000014	N/A	N/A
structural_annotation	UHGV-0096193_85	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_86	phrog_158	44.8	0.0000000000022	major tail protein	tail
UniRef90	UHGV-0096193_86	UniRef90_UPI001D087591	113.0	1.42e-29	phage tail protein	N/A
eggNOG-mapper	UHGV-0096193_86	1449343.JQLQ01000002_gene1514	57.4	0.0000000278	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0096193_86	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0096193_87	UniRef90_A0A496N7D3	64.7	0.0000000000366	N/A	N/A
eggNOG-mapper	UHGV-0096193_87	1123263.AUKY01000015_gene1618	61.6	0.0000000000972	N/A	N/A
Pfam	UHGV-0096193_87	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0096193_87	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0096193_88	1121333.JMLH01000047_gene1011	77.8	1.95e-16	N/A	N/A
PHROG	UHGV-0096193_89	phrog_1535	127.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0096193_89	1121866.AUGK01000003_gene1437	216.0	0	phage tail tape measure protein	N/A
COG	UHGV-0096193_89	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0096193_90	phrog_1194	81.3	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0096193_90	665956.HMPREF1032_03629	55.8	0.00000004	N/A	N/A
Pfam	UHGV-0096193_90	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0096193_90	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_91	phrog_13879	236.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0096193_91	1122919.KB905559_gene1344	165.0	1.02001e-40	N/A	N/A
Pfam	UHGV-0096193_91	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0096193_91	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_92	phrog_18725	71.8	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0096193_92	1226322.HMPREF1545_00062	84.7	1.33e-18	N/A	N/A
PHROG	UHGV-0096193_93	phrog_9534	44.2	0.0000000000016	head protein	head and packaging
eggNOG-mapper	UHGV-0096193_93	748224.HMPREF9436_00405	159.0	1.07003e-41	domain, Protein	N/A
COG	UHGV-0096193_93	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_95	phrog_1382	49.1	0.000000000000043	N/A	unknown function
KOfam	UHGV-0096193_96	K07273	177.1	0	acm; lysozyme	N/A
PHROG	UHGV-0096193_96	phrog_291	150.2	1.68156e-44	endolysin	lysis
UniRef90	UHGV-0096193_96	UniRef90_E2ZES5	346.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0096193_96	748224.HMPREF9436_00154	346.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0096193_96	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0096193_96	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0096193_96	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0096193_98	phrog_15303	115.6	2.3e-34	N/A	unknown function
Pfam	UHGV-0096193_98	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
eggNOG-mapper	UHGV-0096193_99	411483.FAEPRAA2165_00757	49.3	0.00000208	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0096193	Yes	56,568	48	98	1