vOTU vOTU-062096

vOTU: vOTU-062096

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-062096
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → UBA738 → UBA738 sp003522945
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00740 → vGENUS-01036 → vSUBGEN-33108 → vOTU-062096
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → UBA738 → UBA738 sp003522945
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1545254
Biosample ID	SAMEA3541506
Genome length (bp)	36,491 bps
CheckV completeness	98.31% (High-quality)
CDS count	64
CDS density	90.57%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → UBA738 → UBA738 sp003522945	Total connections	72	Host agreement	93.06
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → UBA738 → UBA738 sp003522945	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1545254_2	K07726	46.5	0.00000000000065	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-1545254_2	phrog_2104	46.8	0.00000000000048	N/A	unknown function
UniRef90	UHGV-1545254_2	UniRef90_A0A414P8A6	65.5	0.000000000000906	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1545254_2	471875.RUMLAC_02311	64.3	0.000000000000414	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1545254_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1545254_2	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1545254_2	PF15731,NF007481,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1545254_3	1226322.HMPREF1545_00079	95.1	6.03e-24	N/A	N/A
eggNOG-mapper	UHGV-1545254_4	476272.RUMHYD_01772	51.2	0.00000515	N/A	N/A
structural_annotation	UHGV-1545254_4	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_5	phrog_20016	191.6	0	N/A	unknown function
UniRef90	UHGV-1545254_5	UniRef90_A0A285PT46	196.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1545254_5	1226322.HMPREF1545_00077	167.0	0	N/A	N/A
structural_annotation	UHGV-1545254_5	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_6	phrog_16490	120.8	5e-37	N/A	unknown function
eggNOG-mapper	UHGV-1545254_6	1408437.JNJN01000043_gene803	166.0	0	N/A	N/A
PHROG	UHGV-1545254_7	phrog_22984	87.8	8.8e-26	N/A	unknown function
PHROG	UHGV-1545254_8	phrog_21718	91.3	9.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1545254_8	397290.C810_05210	80.1	4.41e-17	N/A	N/A
PHROG	UHGV-1545254_9	phrog_3754	93.7	1.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-1545254_9	476272.RUMHYD_01764	150.0	2.8026e-45	N/A	N/A
UniRef90	UHGV-1545254_10	UniRef90_A0A8D9PDT6	68.9	0.000000000000167	Transcriptional regulatory protein	N/A
PHROG	UHGV-1545254_11	phrog_608	64.7	1.5e-18	holin	lysis
UniRef90	UHGV-1545254_11	UniRef90_UPI0019604BA7	78.6	1.28e-16	phage holin, LLH family	N/A
eggNOG-mapper	UHGV-1545254_11	1121472.AQWN01000009_gene420	59.7	0.000000000502	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1545254_11	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1545254_11	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_12	phrog_37604	79.7	2.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-1545254_12	585501.HMPREF6123_0817	72.8	0.0000000000000213	N/A	N/A
KOfam	UHGV-1545254_13	K07273	125.9	4.7e-37	acm; lysozyme	N/A
PHROG	UHGV-1545254_13	phrog_291	113.7	2.2e-33	endolysin	lysis
UniRef90	UHGV-1545254_13	UniRef90_A0A3D2G0D9	436.0	0	Cpl-7 domain-containing protein	N/A
eggNOG-mapper	UHGV-1545254_13	877415.JNJQ01000013_gene314	170.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1545254_13	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1545254_13	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1545254_13	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1545254_13	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_15	phrog_9534	122.3	5.3e-36	head protein	head and packaging
UniRef90	UHGV-1545254_15	UniRef90_UPI0015C5CE46	80.9	0.0000000000000954	tail fiber protein	N/A
eggNOG-mapper	UHGV-1545254_15	748224.HMPREF9436_00702	92.4	5.79e-19	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-1545254_16	phrog_538	97.4	1.4e-28	minor tail protein	tail
UniRef90	UHGV-1545254_16	UniRef90_UPI001C113FEF	346.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1545254_16	931626.Awo_c30930	65.9	0.00000000411	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1545254_16	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1545254_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_17	phrog_36410	65.6	5.5e-19	N/A	unknown function
UniRef90	UHGV-1545254_17	UniRef90_UPI001C0FCFFA	361.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1545254_17	411471.SUBVAR_06982	105.0	9.69e-24	Phage tail protein	N/A
structural_annotation	UHGV-1545254_17	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_18	phrog_23464	261.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1545254_18	665950.HMPREF1025_02660	265.0	0	phage tail tape measure protein	N/A
COG	UHGV-1545254_18	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1545254_18	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_20	phrog_885	70.6	1.7e-20	major tail protein	tail
UniRef90	UHGV-1545254_20	UniRef90_A0A843J9F0	197.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1545254_20	1504822.CCNO01000012_gene492	227.0	0	N/A	N/A
structural_annotation	UHGV-1545254_20	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545254_21	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_22	phrog_17977	42.1	0.000000000013	N/A	unknown function
Pfam	UHGV-1545254_22	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1545254_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1545254_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_24	phrog_267	190.6	0	major head protein	head and packaging
UniRef90	UHGV-1545254_24	UniRef90_A0A3Q9B9E4	267.0	0	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-1545254_24	877414.ATWA01000001_gene909	258.0	0	P22 coat protein-protein 5 domain protein	N/A
Pfam	UHGV-1545254_24	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
structural_annotation	UHGV-1545254_24	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1545254_25	UniRef90_A0A6B9SU02	94.0	2.05e-20	Fibronectin autolysin	N/A
structural_annotation	UHGV-1545254_25	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_26	phrog_5	62.3	1.1e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-1545254_26	UniRef90_UPI000691EB78	74.7	0.0000000000000224	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1545254_26	1280689.AUJC01000007_gene3313	61.2	0.000000000569	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1545254_26	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1545254_26	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_27	phrog_2468	105.3	7.9e-31	head morphogenesis	head and packaging
UniRef90	UHGV-1545254_27	UniRef90_A0A4D7AUA1	338.0	0	Phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1545254_27	1504822.CCNO01000013_gene286	145.0	1.71e-36	cell adhesion	N/A
Pfam	UHGV-1545254_27	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1545254_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545254_27	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_28	phrog_64	162.3	0	portal protein	head and packaging
UniRef90	UHGV-1545254_28	UniRef90_UPI0018A8A301	600.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1545254_28	673376.F2VHW1_9CAUD	209.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1545254_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1545254_28	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_29	phrog_38	154.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1545254_29	UniRef90_UPI00166CA12B	460.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1545254_29	1140001.I571_01829	462.0	0	N/A	N/A
structural_annotation	UHGV-1545254_29	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
KOfam	UHGV-1545254_32	K00571	122.8	3.7e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1545254_32	phrog_498	264.5	0	DNA methyltransferase	other
UniRef90	UHGV-1545254_32	UniRef90_A0A101WI32	354.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1545254_32	742823.HMPREF9465_00225	318.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-1545254_32	MTase_II_00015	246.0	0	Type II methyltransferase	RM
Pfam	UHGV-1545254_32	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1545254_32	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1545254_32	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1545254_33	K03497	53.7	0.0000000000000051	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1545254_33	phrog_498	174.2	0	DNA methyltransferase	other
UniRef90	UHGV-1545254_33	UniRef90_A0A810PZK9	252.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1545254_33	985665.HPL003_12065	154.0	8.18358e-43	DNA methylase	N/A
PADLOC	UHGV-1545254_33	MTase_II_00015	131.0	6.4e-39	Type II methyltransferase	RM
Pfam	UHGV-1545254_33	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1545254_33	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1545254_33	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_34	phrog_36	40.9	0.000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-1545254_34	UniRef90_UPI001C10AB33	63.9	0.000000000434	N/A	N/A
structural_annotation	UHGV-1545254_34	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_43	phrog_374	82.6	1.3e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545254_43	UniRef90_UPI0006891852	78.6	0.0000000000000085	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1545254_43	1122149.BACN01000055_gene1942	84.0	2.67e-18	N/A	N/A
PHROG	UHGV-1545254_44	phrog_1770	108.4	6.2e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545254_44	UniRef90_A0A533R9G2	108.0	3.32e-27	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-1545254_44	329726.AM1_4255	106.0	3.17e-27	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1545254_44	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1545254_44	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_45	phrog_16427	75.7	7.7e-22	DNA methyltransferase	other
UniRef90	UHGV-1545254_45	UniRef90_A0A3D5I9W8	205.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1545254_45	657322.FPR_23140	188.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-1545254_45	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1545254_45	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
eggNOG-mapper	UHGV-1545254_46	657322.FPR_23130	76.6	0.00000000000000533	N/A	N/A
PHROG	UHGV-1545254_48	phrog_18306	41.6	0.000000000019	N/A	unknown function
structural_annotation	UHGV-1545254_48	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_49	phrog_16304	109.3	5.1e-32	N/A	unknown function
UniRef90	UHGV-1545254_49	UniRef90_UPI001E560709	141.0	3.23e-38	N/A	N/A
eggNOG-mapper	UHGV-1545254_49	755731.Clo1100_1616	70.1	0.0000000000174	Phage replisome organizer	N/A
Pfam	UHGV-1545254_49	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1545254_49	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1545254_49	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1545254_50	K03111	144.8	8.50588e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1545254_50	phrog_44	146.5	1.49939e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545254_50	UniRef90_A0A1C5PRE8	153.0	2.8026e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1545254_50	500632.CLONEX_02624	142.0	1.18998e-41	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1545254_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1545254_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1545254_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1545254_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1545254_50	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1545254_51	K07455	288.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1545254_51	phrog_148	272.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545254_51	UniRef90_A0A3D3Y007	446.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1545254_51	1226322.HMPREF1545_00015	352.0	0	RecT family	N/A
Pfam	UHGV-1545254_51	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1545254_51	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1545254_51	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1545254_51	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1545254_52	phrog_434	311.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545254_52	UniRef90_A0A3D3XZF3	460.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1545254_52	1121344.JHZO01000003_gene985	293.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1545254_52	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1545254_52	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1545254_52	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1545254_52	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1545254_62	1408323.JQKK01000005_gene152	132.0	3.11e-33	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
eggNOG-mapper	UHGV-1545254_63	428127.EUBDOL_00130	52.4	0.00000253	sequence-specific DNA binding	N/A
COG	UHGV-1545254_63	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1545254_63	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1545254_64	K06400	295.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1545254_64	phrog_95	301.4	0	integrase	integration and excision
UniRef90	UHGV-1545254_64	UniRef90_A0A3A9I9T1	357.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1545254_64	1378168.N510_03180	270.0	0	resolvase	N/A
Pfam	UHGV-1545254_64	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1545254_64	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1545254_64	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1545254_64	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1545254	Yes	36,491	56	98	1
UHGV-0100596	No	20,369	54	51	1