vOTU vOTU-062261

vOTU: vOTU-062261

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-062261
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00321 → vGENUS-00985 → vSUBGEN-41332 → vOTU-062261
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0014976
Biosample ID	SAMEA4766110
Genome length (bp)	34,347 bps
CheckV completeness	99.25% (High-quality)
CDS count	58
CDS density	90.12%
tRNA count	8
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans	Total connections	39	Host agreement	89.74
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans	Total connections	15	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0014976_1	UniRef90_M5R129	80.9	3.95e-17	Bacteriophage replication	N/A
eggNOG-mapper	UHGV-0014976_1	1198676.SMUGS5_00840	80.5	1.52e-17	N/A	N/A
KOfam	UHGV-0014976_2	K14059	175.6	0	int; integrase	N/A
PHROG	UHGV-0014976_2	phrog_1	160.4	0	integrase	integration and excision
UniRef90	UHGV-0014976_2	UniRef90_B0G4D9	691.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0014976_2	411461.DORFOR_01126	691.0	0	Phage integrase family	N/A
Pfam	UHGV-0014976_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0014976_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014976_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0014976_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_3	phrog_32721	147.9	4.06377e-44	N/A	unknown function
eggNOG-mapper	UHGV-0014976_3	1476973.JMMB01000007_gene2215	140.0	2.65e-40	N/A	N/A
structural_annotation	UHGV-0014976_3	PF21223,TIGR04209	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014976_4	UniRef90_B0G4E1	112.0	2.52e-31	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0014976_4	411461.DORFOR_01128	112.0	4.23e-32	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0014976_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0014976_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014976_6	UniRef90_A0A3E5GPF5	244.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0014976_6	397290.C810_05152	76.6	2.38e-16	DNA-binding helix-turn-helix protein	N/A
COG	UHGV-0014976_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0014976_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_13	phrog_6996	62.3	7.7e-18	N/A	unknown function
PHROG	UHGV-0014976_14	phrog_4392	52.3	0.0000000000000079	N/A	unknown function
UniRef90	UHGV-0014976_14	UniRef90_UPI000E489044	211.0	0	membrane lipoprotein lipid attachment site-containing protein	N/A
PHROG	UHGV-0014976_15	phrog_36464	66.4	4.8e-19	N/A	unknown function
UniRef90	UHGV-0014976_15	UniRef90_R6QN85	74.7	4.57e-16	50S ribosomal protein L11 domain protein	N/A
eggNOG-mapper	UHGV-0014976_15	411461.DORFOR_01136	113.0	4.41e-32	N/A	N/A
structural_annotation	UHGV-0014976_15	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_17	phrog_3584	169.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0014976_17	1280698.AUJS01000007_gene1013	413.0	0	N/A	N/A
structural_annotation	UHGV-0014976_17	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0014976_19	K03469	41.3	0.000000000027	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0014976_19	phrog_531	48.2	0.00000000000021	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014976_19	UniRef90_A0A1M6MV17	148.0	3.40516e-43	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0014976_19	411461.DORFOR_01140	292.0	0	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-0014976_19	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0014976_19	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_21	phrog_424	80.2	2.4e-23	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0014976_21	UniRef90_A0A2H4JC51	607.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0014976_21	411461.DORFOR_01142	849.0	0	N/A	N/A
COG	UHGV-0014976_21	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0014976_21	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_22	phrog_954	195.8	0	DNA methyltransferase	other
UniRef90	UHGV-0014976_22	UniRef90_UPI0004115370	318.0	0	methyltransferase	N/A
eggNOG-mapper	UHGV-0014976_22	411461.DORFOR_01143	345.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0014976_22	MTase_II_00074	196.1	0	Type II methyltransferase	RM
Pfam	UHGV-0014976_22	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0014976_22	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0014976_22	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-0014976_23	K03497	132.0	6.2e-39	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0014976_23	phrog_6218	192.8	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014976_23	UniRef90_B0G4F7	868.0	0	ParB-like protein	N/A
eggNOG-mapper	UHGV-0014976_23	411461.DORFOR_01144	868.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0014976_23	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0014976_23	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0014976_23	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0014976_23	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_24	phrog_7566	100.4	9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0014976_24	411461.DORFOR_01145	256.0	0	N/A	N/A
structural_annotation	UHGV-0014976_25	PF08169,MF_01549,TIGR00405	N/A	N/A	N/A	N/A
KOfam	UHGV-0014976_26	K03427	186.6	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0014976_26	phrog_6380	322.3	0	DNA methyltransferase	other
UniRef90	UHGV-0014976_26	UniRef90_A0A3E5GPR3	745.0	0	Type I restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0014976_26	592010.GCWU000182_001448	261.0	0	HsdM N-terminal domain	N/A
PADLOC	UHGV-0014976_26	MTase_I_00005	203.9	0	Type I methyltransferase	RM
Pfam	UHGV-0014976_26	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0014976_26	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0014976_26	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014976_27	592010.GCWU000182_001449	70.5	0.0000000000002	Type I restriction modification DNA specificity domain	N/A
structural_annotation	UHGV-0014976_27	PF01420,COG0732	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_28	phrog_31991	110.2	9e-33	N/A	unknown function
PHROG	UHGV-0014976_29	phrog_38110	120.7	3.2e-36	N/A	unknown function
PHROG	UHGV-0014976_30	phrog_26445	41.1	0.00000000000015	N/A	unknown function
UniRef90	UHGV-0014976_30	UniRef90_A0A8B3AJ48	102.0	1.13e-25	AsnC family protein	N/A
eggNOG-mapper	UHGV-0014976_30	97139.C824_05982	49.3	0.00000974	N/A	N/A
structural_annotation	UHGV-0014976_30	PF00196,TIGR04381,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_32	phrog_38560	49.7	0.000000000000053	N/A	unknown function
eggNOG-mapper	UHGV-0014976_32	610130.Closa_0723	74.7	5.73e-17	N/A	N/A
PHROG	UHGV-0014976_33	phrog_15198	42.5	0.000000000009	N/A	unknown function
UniRef90	UHGV-0014976_33	UniRef90_A0A8B3AJ13	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014976_33	1256908.HMPREF0373_00667	96.3	4.89e-24	N/A	N/A
Pfam	UHGV-0014976_33	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0014976_34	411461.DORFOR_01156	380.0	0	N/A	N/A
PHROG	UHGV-0014976_37	phrog_8684	105.3	7.2e-32	N/A	unknown function
UniRef90	UHGV-0014976_37	UniRef90_UPI000677CD2A	301.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0014976_37	457412.RSAG_01162	171.0	0	YopX protein	N/A
Pfam	UHGV-0014976_37	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0014976_37	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0014976_37	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0014976_39	K04763	171.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0014976_39	phrog_1	149.3	3.08286e-44	integrase	integration and excision
UniRef90	UHGV-0014976_39	UniRef90_B0G4H3	671.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0014976_39	411461.DORFOR_01160	671.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0014976_39	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0014976_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014976_39	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0014976_39	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_40	phrog_11237	105.4	4.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-0014976_40	411461.DORFOR_01161	260.0	0	N/A	N/A
PHROG	UHGV-0014976_41	phrog_119	71.4	1.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014976_41	UniRef90_A0A415MTD9	230.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0014976_41	768710.DesyoDRAFT_1275	104.0	1.93e-27	HNH nucleases	N/A
Pfam	UHGV-0014976_41	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0014976_41	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0014976_42	phrog_5110	101.1	5.5e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0014976_42	UniRef90_UPI00156D89BA	153.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0014976_42	610130.Closa_0740	110.0	6.75e-30	N/A	N/A
Pfam	UHGV-0014976_42	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0014976_42	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_43	phrog_9	268.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0014976_43	UniRef90_A0A415MTC4	1120.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0014976_43	1211817.CCAT010000053_gene2129	593.0	0	Phage Terminase	N/A
Pfam	UHGV-0014976_43	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0014976_43	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0014976_43	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0014976_43	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_44	phrog_12	90.4	1.2e-26	portal protein	head and packaging
UniRef90	UHGV-0014976_44	UniRef90_A0A415MTC5	728.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0014976_44	349161.Dred_2606	199.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0014976_44	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0014976_44	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0014976_44	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0014976_45	K01358	98.0	1.3e-28	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0014976_45	phrog_94	187.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0014976_45	UniRef90_A0A415MTD8	493.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0014976_45	1235792.C808_00085	200.0	0	Clp protease	N/A
Pfam	UHGV-0014976_45	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0014976_45	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0014976_45	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_46	phrog_10	102.7	2.8e-30	major head protein	head and packaging
UniRef90	UHGV-0014976_46	UniRef90_A0A415MTA6	773.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0014976_46	1384484.AEQU_1180	317.0	0	Phage capsid family	N/A
Pfam	UHGV-0014976_46	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0014976_46	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0014976_46	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0014976_46	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_48	phrog_5635	48.2	0.0000000000002	head-tail adaptor	connector
eggNOG-mapper	UHGV-0014976_48	1384484.AEQU_1178	56.2	0.0000000151	N/A	N/A
NCBIFam	UHGV-0014976_48	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0014976_48	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014976_49	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_50	phrog_5509	90.0	2.1e-26	neck protein	connector
UniRef90	UHGV-0014976_50	UniRef90_W0FMR6	113.0	9.74e-30	Gp9 protein	N/A
eggNOG-mapper	UHGV-0014976_50	1450694.BTS2_0537	71.6	0.0000000000000537	N/A	N/A
structural_annotation	UHGV-0014976_50	TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014976_51	UniRef90_UPI00156FB996	272.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0014976_51	1384484.AEQU_1175	147.0	2.88948e-42	N/A	N/A
structural_annotation	UHGV-0014976_51	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014976_52	UniRef90_UPI00040253E3	194.0	0	SAP domain-containing protein	N/A
Pfam	UHGV-0014976_52	PF02037	N/A	N/A	SAP domain	SAP
structural_annotation	UHGV-0014976_52	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_55	phrog_13339	395.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0014976_55	UniRef90_A0A415MTD4	1508.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0014976_55	1336234.JAGN01000004_gene517	307.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0014976_55	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0014976_55	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0014976_55	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0014976_55	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_56	phrog_33	53.8	0.0000000000000047	distal tail protein Dit	tail
UniRef90	UHGV-0014976_56	UniRef90_A0A415MTE8	477.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0014976_56	411461.DORFOR_01176	275.0	0	N/A	N/A
structural_annotation	UHGV-0014976_56	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_57	phrog_538	220.4	0	minor tail protein	tail
UniRef90	UHGV-0014976_57	UniRef90_UPI001E2C8064	343.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0014976_57	411461.DORFOR_01177	414.0	0	N/A	N/A
Pfam	UHGV-0014976_57	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0014976_57	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0014976_58	phrog_13141	146.9	1.20512e-43	N/A	unknown function
UniRef90	UHGV-0014976_58	UniRef90_UPI00156D68EE	256.0	0	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0014976_58	411461.DORFOR_01178	343.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0014976	Yes	34,347	42	99	1
UHGV-0032083	No	32,931	41	95	1