vOTU vOTU-062693

vOTU: vOTU-062693

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-062693
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-01161 → vSUBGEN-30980 → vOTU-062693
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0336326
Biosample ID	N/A
Genome length (bp)	34,153 bps
CheckV completeness	99.90% (High-quality)
CDS count	51
CDS density	94.56%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	906	Host agreement	97.46
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	282	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0336326_1	phrog_3657	356.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0336326_1	1121864.OMO_02139	235.0	0	N/A	N/A
KOfam	UHGV-0336326_2	K10906	103.8	1.2e-36	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0336326_2	phrog_412	272.6	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336326_2	UniRef90_A0A1C6FHM2	528.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-0336326_2	395494.Galf_0946	164.0	0	N/A	N/A
Pfam	UHGV-0336326_2	PF12684	N/A	N/A	N/A	DUF3799
structural_annotation	UHGV-0336326_2	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_7	phrog_757	201.8	0	DNA methyltransferase	other
UniRef90	UHGV-0336326_7	UniRef90_A0A349YFI2	259.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0336326_7	1095750.HMPREF9970_0173	239.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0336326_7	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0336326_7	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336326_10	PF11372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336326_11	MF_00273	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_12	phrog_14088	47.2	0.00000000000017	N/A	unknown function
UniRef90	UHGV-0336326_12	UniRef90_A0A374HW23	129.0	8.82e-38	Carboxypeptidase	N/A
eggNOG-mapper	UHGV-0336326_12	1235802.C823_04730	61.6	0.00000000000779	N/A	N/A
UniRef90	UHGV-0336326_13	UniRef90_A0A373XXU1	130.0	4.1e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0336326_13	428125.CLOLEP_02737	53.1	0.0000000328	N/A	N/A
KOfam	UHGV-0336326_14	K07727	40.7	0.000000000055	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0336326_14	phrog_8	64.5	2.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0336326_14	UniRef90_A0A373XY93	243.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0336326_14	1160721.RBI_I01471	69.3	0.00000000000017	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0336326_14	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0336326_14	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_15	phrog_20936	41.7	0.000000000021	N/A	unknown function
UniRef90	UHGV-0336326_15	UniRef90_A0A374E958	142.0	4.48416e-43	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0336326_15	861450.HMPREF0080_02020	50.1	0.000000413	N/A	N/A
Pfam	UHGV-0336326_15	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0336326_15	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0336326_16	K02342	203.3	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0336326_16	phrog_192	182.8	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336326_16	UniRef90_A0A373VNA0	854.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0336326_16	864565.HMPREF0379_1203	167.0	6.11947e-42	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	N/A
PADLOC	UHGV-0336326_16	cd06127	147.3	6.16571e-44	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0336326_16	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0336326_16	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0336326_16	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-0336326_17	K14059	252.0	0	int; integrase	N/A
PHROG	UHGV-0336326_17	phrog_1	211.5	0	integrase	integration and excision
UniRef90	UHGV-0336326_17	UniRef90_A0A1C6FGR9	747.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0336326_17	1408823.AXUS01000024_gene2685	171.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-0336326_17	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0336326_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0336326_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0336326_17	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_19	phrog_1914	69.7	4.3e-20	N/A	unknown function
UniRef90	UHGV-0336326_19	UniRef90_UPI001A9A7A19	342.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0336326_19	997296.PB1_16109	137.0	9.15e-39	N/A	N/A
Pfam	UHGV-0336326_19	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0336326_19	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0336326_19	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0336326_20	K22299	56.3	7.8e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0336326_20	UniRef90_A0A374ERP2	225.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0336326_20	59374.Fisuc_2499	95.5	7.52e-24	sequence-specific DNA binding	N/A
PADLOC	UHGV-0336326_20	retron_type_VI_hth_cluster2_1	42.0	0.000000000019	N/A	Retron
Pfam	UHGV-0336326_20	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0336326_20	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336326_20	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_21	phrog_297	170.8	0	holin	lysis
UniRef90	UHGV-0336326_21	UniRef90_A0A356CY82	471.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0336326_21	1160721.RBI_II00521	93.2	7.23e-20	hydrolase, family 25	N/A
Pfam	UHGV-0336326_21	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0336326_21	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0336326_21	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_22	phrog_199	81.0	1.4e-23	holin	lysis
UniRef90	UHGV-0336326_22	UniRef90_A0A373XMP0	280.0	0	Holin	N/A
eggNOG-mapper	UHGV-0336326_22	1160721.RBI_I01565	183.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0336326_22	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0336326_22	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0336326_22	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0336326_22	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0336326_24	1410617.JHXH01000006_gene232	86.3	0.00000000000000382	N/A	N/A
structural_annotation	UHGV-0336326_24	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_26	phrog_9680	54.7	5.9e-17	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0336326_26	1160721.RBI_II00526	593.0	0	N/A	N/A
structural_annotation	UHGV-0336326_26	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_27	phrog_1194	48.7	0.00000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0336326_27	1160721.RBI_II00527	104.0	2.63e-27	N/A	N/A
structural_annotation	UHGV-0336326_27	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_28	phrog_6900	266.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0336326_28	768726.HMPREF9178_1054	304.0	0	phage tail tape measure protein	N/A
COG	UHGV-0336326_28	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336326_28	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_29	phrog_1633	138.1	3.09995e-41	N/A	unknown function
UniRef90	UHGV-0336326_29	UniRef90_A0A139QHL2	123.0	4.71e-34	N/A	N/A
eggNOG-mapper	UHGV-0336326_29	873448.STRPO_0293	110.0	7.41e-30	N/A	N/A
Pfam	UHGV-0336326_29	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0336326_29	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_30	phrog_1526	83.8	1.5e-24	N/A	unknown function
UniRef90	UHGV-0336326_30	UniRef90_A0A0E4H642	65.9	0.00000000000356	N/A	N/A
eggNOG-mapper	UHGV-0336326_30	665950.HMPREF1025_02524	80.5	1.06e-18	N/A	N/A
PHROG	UHGV-0336326_31	phrog_117	162.8	0	major tail protein	tail
UniRef90	UHGV-0336326_31	UniRef90_A0A373V4D0	365.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0336326_31	1121864.OMO_02158	190.0	0	domain, Protein	N/A
COG	UHGV-0336326_31	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336326_31	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_32	phrog_123	62.3	8.9e-18	tail terminator	connector
UniRef90	UHGV-0336326_32	UniRef90_A0A2A5RIK6	118.0	2.5e-32	N/A	N/A
eggNOG-mapper	UHGV-0336326_32	1123263.AUKY01000068_gene495	125.0	1.09e-35	N/A	N/A
structural_annotation	UHGV-0336326_32	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_33	phrog_387	58.7	9.4e-17	neck protein	connector
eggNOG-mapper	UHGV-0336326_33	1423775.BAMN01000011_gene600	64.3	0.0000000000012	N/A	N/A
PHROG	UHGV-0336326_34	phrog_501	71.1	1.5e-20	head closure Hc1	connector
UniRef90	UHGV-0336326_34	UniRef90_R6CEU4	150.0	7.00649e-45	N/A	N/A
eggNOG-mapper	UHGV-0336326_34	748224.HMPREF9436_00693	133.0	4.41e-39	N/A	N/A
structural_annotation	UHGV-0336326_34	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_35	phrog_137	53.6	0.0000000000000035	head-tail adaptor Ad1	connector
UniRef90	UHGV-0336326_35	UniRef90_R6C7E8	159.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0336326_35	1121864.OMO_02154	87.0	5.13e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0336326_35	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0336326_35	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_36	phrog_32396	127.6	3.9e-38	N/A	unknown function
UniRef90	UHGV-0336326_36	UniRef90_A0A373V3S9	583.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0336326_36	936375.HMPREF1152_0679	325.0	0	Phage capsid family	N/A
Pfam	UHGV-0336326_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-0336326_36	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_37	phrog_233	65.0	2.1e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0336326_37	UniRef90_A0A7Z2B590	75.9	0.0000000000000114	N/A	N/A
eggNOG-mapper	UHGV-0336326_37	936375.HMPREF1152_0678	67.0	0.0000000000045	N/A	N/A
Pfam	UHGV-0336326_37	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0336326_37	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_38	phrog_17688	302.3	0	N/A	unknown function
UniRef90	UHGV-0336326_38	UniRef90_A0A373V412	843.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0336326_38	665950.HMPREF1025_02532	509.0	0	phage terminase, large subunit	N/A
COG	UHGV-0336326_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0336326_38	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_40	phrog_34144	69.5	3.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0336326_40	742742.HMPREF9452_00763	81.3	5.01e-20	N/A	N/A
structural_annotation	UHGV-0336326_40	PF20111	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_41	phrog_2494	169.4	0	minor head protein	head and packaging
UniRef90	UHGV-0336326_41	UniRef90_A0A316LS12	176.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0336326_41	875454.BAEW01000017_gene1600	154.0	1.41e-40	N/A	N/A
PHROG	UHGV-0336326_42	phrog_104	252.0	0	portal protein	head and packaging
UniRef90	UHGV-0336326_42	UniRef90_A0A373V3S0	797.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0336326_42	1280698.AUJS01000007_gene1033	491.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0336326_42	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_44	phrog_36	45.5	0.00000000000068	transcriptional regulator	transcription regulation
UniRef90	UHGV-0336326_44	UniRef90_A0A374HLM1	242.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0336326_44	1121335.Clst_0383	52.8	0.000000632	N/A	N/A
structural_annotation	UHGV-0336326_44	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_45	phrog_986	82.8	3.4e-24	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336326_45	UniRef90_A0A373XQS7	222.0	0	N/A	N/A
eggNOG-mapper	UHGV-0336326_45	2754.EH55_06950	67.0	0.000000000000892	N/A	N/A
Pfam	UHGV-0336326_45	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0336326_45	PF12961,MF_00771,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_46	phrog_424	82.6	4.8e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0336326_46	UniRef90_C0CTA2	473.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0336326_46	445972.ANACOL_01819	493.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0336326_46	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0336326_46	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_48	phrog_824	126.0	1.6e-37	N/A	unknown function
UniRef90	UHGV-0336326_48	UniRef90_A0A373V639	245.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0336326_48	641107.CDLVIII_1315	103.0	6.43e-27	VRR-NUC domain	N/A
Pfam	UHGV-0336326_48	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0336326_48	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0336326_49	K17677	416.4	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0336326_49	phrog_16	246.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336326_49	UniRef90_A0A373V5W0	1003.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0336326_49	742738.HMPREF9460_02499	640.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0336326_49	mREase_IV_00005	113.6	1.7e-33	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0336326_49	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0336326_49	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0336326_49	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0336326_49	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0336326_50	phrog_8841	489.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336326_50	UniRef90_A0A1C6FHQ3	1266.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0336326_50	742738.HMPREF9460_02495	611.0	0	N/A	N/A
Pfam	UHGV-0336326_50	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0336326_50	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0336326_50	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336326_50	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0336326_51	K03111	50.8	0.000000000000043	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0336326_51	phrog_44	47.6	0.00000000000043	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336326_51	UniRef90_A0A1C6FIL5	276.0	0	Helix-destabilizing protein	N/A
eggNOG-mapper	UHGV-0336326_51	1121370.AQUY01000001_gene1006	55.1	0.000000217	Single-strand binding protein family	N/A
Pfam	UHGV-0336326_51	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0336326_51	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0336326_51	PF00436,MF_00984,TIGR04418,COG2965	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0336326	Yes	34,153	45	100	1
UHGV-0155213	No	24,345	46	71	1
UHGV-0253665	No	12,077	45	35	1
UHGV-1840500	No	11,454	45	34	1