vOTU vOTU-062776

vOTU: vOTU-062776

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-062776
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00160 → vGENUS-02019 → vSUBGEN-35517 → vOTU-062776
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0172200
Biosample ID	N/A
Genome length (bp)	41,340 bps
CheckV completeness	95.81% (High-quality)
CDS count	57
CDS density	91.76%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4	Total connections	142	Host agreement	79.58
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.81)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0172200_4	K16628	198.6	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0172200_4	phrog_819	118.6	0	tail protein	tail
UniRef90	UHGV-0172200_4	UniRef90_UPI00068BE71D	296.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0172200_4	1519439.JPJG01000060_gene1892	296.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0172200_4	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0172200_4	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0172200_4	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_5	phrog_15239	78.5	6.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0172200_5	1449126.JQKL01000003_gene1694	51.2	0.000000881	N/A	N/A
PHROG	UHGV-0172200_6	phrog_1357	253.4	0	major head protein	head and packaging
UniRef90	UHGV-0172200_6	UniRef90_A0A8D9UH64	506.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0172200_6	1449126.JQKL01000003_gene1695	450.0	0	N/A	N/A
NCBIFam	UHGV-0172200_6	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0172200_6	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_7	phrog_13908	264.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0172200_7	1410650.JHWL01000003_gene2831	100.0	1.63e-21	N/A	N/A
structural_annotation	UHGV-0172200_8	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_9	phrog_156	318.2	0	portal protein	head and packaging
UniRef90	UHGV-0172200_9	UniRef90_A0A8D9UH10	687.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0172200_9	748224.HMPREF9436_01396	487.0	0	N/A	N/A
structural_annotation	UHGV-0172200_9	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0172200_10	K06909	99.0	6e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0172200_10	phrog_979	151.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0172200_10	UniRef90_A0A1Y4WJ48	692.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0172200_10	748224.HMPREF9436_01395	554.0	0	Terminase-like family	N/A
Pfam	UHGV-0172200_10	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0172200_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0172200_10	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_11	phrog_606	83.5	2.6e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0172200_11	UniRef90_UPI00195648BB	170.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0172200_11	397290.C810_05185	150.0	5.32493e-44	DNA-packaging protein gp3	N/A
Pfam	UHGV-0172200_11	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0172200_11	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172200_14	445972.ANACOL_00168	48.5	0.00000126	N/A	N/A
UniRef90	UHGV-0172200_17	UniRef90_UPI0012AD39DD	63.5	0.00000000522	leucine-rich repeat protein	N/A
COG	UHGV-0172200_17	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
UniRef90	UHGV-0172200_18	UniRef90_A0A098GES5	88.2	8.96e-21	Putative phage associated protein	N/A
structural_annotation	UHGV-0172200_18	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_19	phrog_757	191.8	0	DNA methyltransferase	other
UniRef90	UHGV-0172200_19	UniRef90_A0A3E2U1Y9	298.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0172200_19	748224.HMPREF9436_03069	254.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0172200_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0172200_19	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0172200_20	K00390	54.0	3.3e-16	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0172200_20	phrog_424	142.6	2.49992e-42	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0172200_20	UniRef90_UPI001D097961	339.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0172200_20	1345695.CLSA_c30150	250.0	0	N/A	N/A
Pfam	UHGV-0172200_20	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0172200_20	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0172200_20	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
Pfam	UHGV-0172200_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0172200_21	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0172200_22	K00571	104.7	1.1e-30	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0172200_22	phrog_23224	199.9	0	DNA methyltransferase	other
UniRef90	UHGV-0172200_22	UniRef90_D4K450	365.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0172200_22	718252.FP2_06750	365.0	0	DNA methylase	N/A
PADLOC	UHGV-0172200_22	MTase_II_00172	90.3	5.5e-28	Type II methyltransferase	RM
Pfam	UHGV-0172200_22	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0172200_22	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0172200_22	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
Pfam	UHGV-0172200_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172200_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0172200_23	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_25	phrog_190	128.4	4.8e-38	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172200_25	UniRef90_A0A8D9PDD6	145.0	3.87039e-42	Endonuclease	N/A
eggNOG-mapper	UHGV-0172200_25	1226322.HMPREF1545_00295	131.0	6.24e-37	N/A	N/A
Pfam	UHGV-0172200_25	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0172200_25	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0172200_27	K02315	172.5	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0172200_27	phrog_50	151.0	8.40779e-45	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172200_27	UniRef90_UPI00137A9A0F	283.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0172200_27	203119.Cthe_2467	256.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0172200_27	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0172200_27	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0172200_27	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0172200_27	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_28	phrog_2149	75.7	9.4e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172200_28	742740.HMPREF9474_03117	187.0	0	N/A	N/A
structural_annotation	UHGV-0172200_28	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0172200_29	K03111	137.8	1.3e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0172200_29	phrog_44	140.2	1.40004e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172200_29	UniRef90_R5SNS5	184.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0172200_29	1519439.JPJG01000082_gene432	188.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0172200_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0172200_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0172200_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0172200_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0172200_29	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_30	phrog_7566	85.1	5.9e-25	N/A	unknown function
UniRef90	UHGV-0172200_30	UniRef90_A0A3A5TWB4	57.4	0.0000000137	Phosphoenolpyruvate carboxykinase	N/A
PHROG	UHGV-0172200_31	phrog_72	68.1	1.1e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172200_31	UniRef90_UPI000C7BF263	173.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0172200_31	445972.ANACOL_01825	138.0	4.45e-39	N/A	N/A
structural_annotation	UHGV-0172200_31	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_32	phrog_7838	150.7	1.12104e-44	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172200_32	UniRef90_A0A8D9UGW3	282.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0172200_32	742767.HMPREF9456_02052	183.0	0	N/A	N/A
structural_annotation	UHGV-0172200_32	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_33	phrog_253	84.2	1.8e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172200_33	UniRef90_A0A8D9PDS3	167.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0172200_33	411470.RUMGNA_02192	124.0	2.99e-34	Siphovirus Gp157	N/A
Pfam	UHGV-0172200_33	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0172200_33	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_34	phrog_22529	102.1	3.2e-30	N/A	unknown function
UniRef90	UHGV-0172200_34	UniRef90_A0A352RPR8	144.0	1.15e-40	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0172200_34	1298920.KI911353_gene568	108.0	1.05e-26	3D domain	N/A
Pfam	UHGV-0172200_34	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0172200_34	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0172200_34	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172200_36	PF11112,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0172200_37	K07741	224.6	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0172200_37	phrog_63	186.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0172200_37	UniRef90_UPI001379CF69	368.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0172200_37	1232443.BAIA02000079_gene53	328.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0172200_37	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0172200_37	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0172200_37	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0172200_37	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172200_38	UniRef90_N9Z4Q7	53.1	0.000000081	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0172200_38	1121344.JHZO01000003_gene989	48.1	0.00000431	PFAM helix-turn-helix domain protein	N/A
COG	UHGV-0172200_38	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0172200_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-0172200_39	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0172200_39	PF01381,MF_00535,NF041951,TIGR02607,COG3655,COG3093	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172200_42	UniRef90_A0A354UMM3	54.3	0.00000111	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0172200_42	537007.BLAHAN_06565	49.3	0.00000546	sequence-specific DNA binding	N/A
Pfam	UHGV-0172200_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172200_42	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0172200_42	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0172200_43	K14059	162.8	0	int; integrase	N/A
PHROG	UHGV-0172200_43	phrog_1	158.8	0	integrase	integration and excision
UniRef90	UHGV-0172200_43	UniRef90_A0A1C5W824	527.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0172200_43	445972.ANACOL_01797	293.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0172200_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172200_43	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0172200_43	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172200_44	UniRef90_A0A843GWV6	112.0	4.62e-30	Rubrerythrin domain-containing protein	N/A
structural_annotation	UHGV-0172200_46	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0172200_49	K17733	93.3	3e-27	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0172200_49	phrog_6523	70.5	3.3e-20	endolysin	lysis
UniRef90	UHGV-0172200_49	UniRef90_R5RXG6	218.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-0172200_49	1519439.JPJG01000023_gene536	208.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0172200_49	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0172200_49	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0172200_49	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0172200_50	phrog_13256	61.0	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0172200_50	428125.CLOLEP_01907	73.2	2.4e-16	N/A	N/A
eggNOG-mapper	UHGV-0172200_52	1519439.JPJG01000023_gene533	96.7	7.53e-25	N/A	N/A
eggNOG-mapper	UHGV-0172200_53	1519439.JPJG01000060_gene1905	579.0	0	N/A	N/A
Pfam	UHGV-0172200_53	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
eggNOG-mapper	UHGV-0172200_54	1519439.JPJG01000060_gene1904	136.0	9.37e-33	N/A	N/A
PHROG	UHGV-0172200_55	phrog_511	185.1	0	internal virion protein	head and packaging
UniRef90	UHGV-0172200_55	UniRef90_A0A8D9UH72	251.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0172200_55	1226322.HMPREF1545_00785	433.0	0	N/A	N/A
structural_annotation	UHGV-0172200_55	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0172200	Yes	41,340	57	96	1