vOTU vOTU-062973

vOTU: vOTU-062973

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-062973
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00190 → vGENUS-06701 → vSUBGEN-32956 → vOTU-062973
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → RUG115 → RUG115 sp900066395
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0055443
Biosample ID	N/A
Genome length (bp)	45,339 bps
CheckV completeness	90.06% (High-quality)
CDS count	72
CDS density	94.41%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → RUG115 → RUG115 sp900066395	Total connections	306	Host agreement	78.43
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0055443_1	PF00210,NF007638,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_3	phrog_16490	65.2	3.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0055443_3	476272.RUMHYD_01770	127.0	7.21e-34	N/A	N/A
PHROG	UHGV-0055443_5	phrog_1220	165.5	0	head protein	head and packaging
UniRef90	UHGV-0055443_5	UniRef90_UPI000E52B44D	325.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0055443_5	1033737.CAEV01000028_gene283	133.0	3.86e-32	N/A	N/A
Pfam	UHGV-0055443_5	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0055443_6	phrog_538	139.1	3.09995e-41	minor tail protein	tail
UniRef90	UHGV-0055443_6	UniRef90_UPI000314F487	103.0	8.79e-21	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0055443_6	1033738.CAEP01000018_gene3684	103.0	1.47e-21	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0055443_6	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0055443_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0055443_7	UniRef90_D9SQ05	65.1	0.0000000214	Tail component family protein	N/A
eggNOG-mapper	UHGV-0055443_7	573061.Clocel_2428	65.1	0.00000000358	Phage tail protein	N/A
COG	UHGV-0055443_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0055443_7	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_8	phrog_1533	525.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0055443_8	UniRef90_UPI00193AE0CE	399.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0055443_8	1027292.HMPREF9372_1250	392.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0055443_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0055443_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0055443_8	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0055443_8	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_9	phrog_6541	52.8	0.0000000000000037	N/A	unknown function
PHROG	UHGV-0055443_10	phrog_6280	137.1	7.20001e-41	N/A	unknown function
UniRef90	UHGV-0055443_10	UniRef90_UPI0005425395	115.0	2.75e-30	esterase	N/A
eggNOG-mapper	UHGV-0055443_10	445335.CBN_3078	121.0	1.7e-33	N/A	N/A
PHROG	UHGV-0055443_11	phrog_6686	129.7	2e-38	tail tube protein	tail
UniRef90	UHGV-0055443_11	UniRef90_A0A1C6KI12	182.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0055443_11	871584.D9ZNE2_9CAUD	90.5	1.24e-19	N/A	N/A
structural_annotation	UHGV-0055443_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_12	phrog_7585	80.0	3.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0055443_12	445335.CBN_3080	67.0	0.00000000000171	N/A	N/A
structural_annotation	UHGV-0055443_12	PF05657,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0055443_13	1443122.Z958_05860	93.6	3.61e-23	N/A	N/A
Pfam	UHGV-0055443_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0055443_13	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_14	phrog_8435	44.4	0.0000000000023	N/A	unknown function
structural_annotation	UHGV-0055443_14	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_15	phrog_4020	75.0	8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0055443_15	445335.CBN_3083	74.7	1.61e-16	N/A	N/A
structural_annotation	UHGV-0055443_16	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_17	phrog_29	241.4	0	major head protein	head and packaging
UniRef90	UHGV-0055443_17	UniRef90_UPI00082C04A5	427.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0055443_17	1158612.I580_01912	326.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0055443_17	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0055443_17	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_18	phrog_909	92.4	3.2e-27	major head protein	head and packaging
eggNOG-mapper	UHGV-0055443_18	1158612.I580_01911	91.7	4.72e-22	N/A	N/A
structural_annotation	UHGV-0055443_18	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_19	phrog_2303	43.4	0.0000000000039	head scaffolding protein	head and packaging
structural_annotation	UHGV-0055443_19	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_20	phrog_1315	44.7	0.0000000000023	N/A	unknown function
structural_annotation	UHGV-0055443_20	TIGR00310	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_22	phrog_1657	182.7	0	head morphogenesis	head and packaging
UniRef90	UHGV-0055443_22	UniRef90_A0A1G9U003	164.0	8.40779e-45	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0055443_22	748727.CLJU_c31360	172.0	0	Portal protein	N/A
Pfam	UHGV-0055443_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0055443_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
PHROG	UHGV-0055443_24	phrog_64	105.4	5.4e-31	portal protein	head and packaging
UniRef90	UHGV-0055443_24	UniRef90_A0A843GSM3	357.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0055443_24	431943.CKL_3279	107.0	9.14e-22	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0055443_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0055443_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0055443_25	K01447	78.2	1.5e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0055443_25	phrog_35436	141.0	6.50062e-42	amidase	lysis
UniRef90	UHGV-0055443_25	UniRef90_UPI001959A1CC	254.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0055443_25	1235798.C817_04599	199.0	0	Ami_2	N/A
Pfam	UHGV-0055443_25	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0055443_25	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0055443_25	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0055443_25	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_26	phrog_443	56.8	6.5e-16	holin	lysis
UniRef90	UHGV-0055443_26	UniRef90_UPI000E5CA950	84.3	8.58e-20	holin	N/A
eggNOG-mapper	UHGV-0055443_26	1235802.C823_05612	80.1	6.99e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0055443_26	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0055443_26	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_27	phrog_1009	40.2	0.000000000049	N/A	unknown function
KOfam	UHGV-0055443_29	K06909	310.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0055443_29	phrog_3717	119.7	3.40516e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0055443_29	UniRef90_A0A349YI29	545.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0055443_29	536232.CLM_2529	452.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0055443_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0055443_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0055443_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0055443_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0055443_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_32	phrog_842	212.3	0	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UniRef90	UHGV-0055443_32	UniRef90_A0A516LJ12	287.0	0	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	N/A
eggNOG-mapper	UHGV-0055443_32	508419.F8J156_9CAUD	219.0	0	N/A	N/A
Pfam	UHGV-0055443_32	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0055443_32	PF20691,NF041865,COG1216	N/A	N/A	N/A	N/A
KOfam	UHGV-0055443_33	K03497	49.4	0.000000000000091	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0055443_33	phrog_620	152.1	2.8026e-45	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055443_33	UniRef90_UPI000FD68CF7	217.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0055443_33	508419.F8J155_9CAUD	214.0	0	helicase activity	N/A
PADLOC	UHGV-0055443_33	MTase_II_00015	91.2	1.7e-26	Type II methyltransferase	RM
Pfam	UHGV-0055443_33	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-0055443_33	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_36	phrog_2412	46.9	0.0000000000003	N/A	unknown function
structural_annotation	UHGV-0055443_39	PF14084	N/A	N/A	N/A	N/A
KOfam	UHGV-0055443_40	K03469	146.2	2.60642e-43	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0055443_40	phrog_531	138.1	4.49999e-41	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055443_40	UniRef90_UPI0003B672EF	133.0	3.9e-37	ribonuclease HI	N/A
eggNOG-mapper	UHGV-0055443_40	1089550.ATTH01000001_gene1281	133.0	6.54e-38	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0055443_40	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0055443_40	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0055443_40	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0055443_41	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0055443_44	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_45	phrog_2002	62.5	6.9e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0055443_45	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_47	phrog_6466	58.3	1.2e-16	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055443_47	UniRef90_A0A843GQD5	81.6	6.63e-18	DNA_ligase_aden domain-containing protein	N/A
KOfam	UHGV-0055443_50	K09882	140.1	1.99993e-41	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0055443_50	phrog_249	206.5	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0055443_50	UniRef90_A0A1W1UZM7	270.0	0	AAA domain (Dynein-related subfamily)	N/A
eggNOG-mapper	UHGV-0055443_50	330395.Q30L55_9CAUD	175.0	0	ATPase activity	N/A
Pfam	UHGV-0055443_50	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
structural_annotation	UHGV-0055443_50	PF07726,MF_01314,TIGR01650,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_51	phrog_1909	130.6	1.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0055443_51	1458697.W6E8E8_9CAUD	69.7	0.000000000105	N/A	N/A
PHROG	UHGV-0055443_54	phrog_159	44.4	0.0000000000017	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0055443_54	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0055443_55	K03427	74.4	1.5e-21	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0055443_55	phrog_5696	262.5	0	N/A	unknown function
UniRef90	UHGV-0055443_55	UniRef90_A0A4Q7P305	189.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0055443_55	742733.HMPREF9469_05064	191.0	0	N-6 DNA Methylase	N/A
PADLOC	UHGV-0055443_55	MTase_I_00004	41.9	0.000000000016	Type I methyltransferase	RM
Pfam	UHGV-0055443_55	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0055443_55	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0055443_55	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_56	phrog_424	58.9	1e-16	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0055443_56	UniRef90_F7JZX1	175.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0055443_56	1235802.C823_04696	183.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0055443_56	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
structural_annotation	UHGV-0055443_56	PF01507,MF_00063,TIGR02055,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_57	phrog_424	42.0	0.000000000015	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0055443_57	UniRef90_A0A349YKJ3	104.0	6.9e-27	PAPS_reduct domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0055443_57	1235802.C823_04696	112.0	1.84e-28	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0055443_57	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
structural_annotation	UHGV-0055443_59	PF08029,MF_00476	N/A	N/A	N/A	N/A
PHROG	UHGV-0055443_61	phrog_1706	57.2	2.9e-16	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055443_61	UniRef90_A0A5D3IBF8	60.8	0.000000348	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0055443_61	1499968.TCA2_4616	64.7	0.00000000339	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-0055443_61	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0055443_61	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0055443_62	PF01775,MF_00273,NF010188,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0055443_63	K03553	163.3	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0055443_63	phrog_97	156.3	0	UvsX-like recombinase	other
UniRef90	UHGV-0055443_63	UniRef90_UPI001BCFCE00	145.0	1.05e-37	recombinase RecA	N/A
eggNOG-mapper	UHGV-0055443_63	469616.FMAG_02276	137.0	5.28e-35	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0055443_63	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0055443_63	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0055443_63	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0055443_64	K02337	734.5	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0055443_64	phrog_405	675.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055443_64	UniRef90_A0A843GPT9	872.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0055443_64	224324.aq_1008	427.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0055443_64	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0055443_64	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0055443_64	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0055443_64	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0055443_64	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0055443_64	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0055443_64	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0055443_66	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0055443_68	K02316	105.5	3.6e-31	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0055443_68	phrog_47	123.4	2.5e-36	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055443_68	UniRef90_A0A843GN62	301.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0055443_68	1278306.KB906916_gene1149	67.0	0.00000000202	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
Pfam	UHGV-0055443_68	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0055443_68	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0055443_68	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0055443_68	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0055443_70	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0055443	Yes	45,339	36	90	1
UHGV-1493480	No	45,339	36	90	1
UHGV-1417644	No	45,238	36	90	1