vOTU vOTU-063018

vOTU: vOTU-063018

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063018
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-01680 → vGENUS-01781 → vSUBGEN-33943 → vOTU-063018
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0001023
Biosample ID	SAMEA4766011
Genome length (bp)	39,167 bps
CheckV completeness	99.36% (High-quality)
CDS count	53
CDS density	93.64%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	724	Host agreement	97.24
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103 → CAG-103 sp000432375	Total connections	62	Host agreement	75.81

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0001023_1	UniRef90_R5ARW1	3819.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0001023_1	1226322.HMPREF1545_00787	637.0	0	N/A	N/A
Pfam	UHGV-0001023_1	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0001023_3	phrog_199	65.1	7.7e-19	holin	lysis
UniRef90	UHGV-0001023_3	UniRef90_R5AT18	277.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0001023_3	1121344.JHZO01000003_gene684	150.0	2.10195e-44	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0001023_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0001023_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0001023_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0001023_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0001023_4	K01447	66.0	7.3e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0001023_4	phrog_5182	172.0	0	endolysin	lysis
UniRef90	UHGV-0001023_4	UniRef90_R5AZE6	473.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0001023_4	397288.C806_00777	192.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0001023_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0001023_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0001023_4	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_5	phrog_5240	83.1	2.6e-24	tail fiber protein	tail
eggNOG-mapper	UHGV-0001023_5	279808.SH2335	78.6	0.00000000000222	GDSL-like Lipase/Acylhydrolase family	N/A
Pfam	UHGV-0001023_5	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0001023_5	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0001023_6	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001023_7	PF17577	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_9	phrog_156	119.7	1.8e-35	portal protein	head and packaging
structural_annotation	UHGV-0001023_9	PF12236,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_10	phrog_3287	230.0	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0001023_10	1408437.JNJN01000002_gene1390	389.0	0	N/A	N/A
structural_annotation	UHGV-0001023_10	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_11	phrog_13046	248.9	0	N/A	unknown function
structural_annotation	UHGV-0001023_11	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_12	phrog_371	53.9	0.0000000000000027	major head protein	head and packaging
UniRef90	UHGV-0001023_12	UniRef90_R7FUR2	244.0	0	Mu-like prophage major head subunit gpt-like protein	N/A
Pfam	UHGV-0001023_12	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0001023_12	PF19774,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001023_13	COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_15	phrog_2	94.0	2.3e-27	terminase large subunit	head and packaging
UniRef90	UHGV-0001023_15	UniRef90_R5AVW7	1108.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0001023_15	693746.OBV_23980	603.0	0	phage Terminase large subunit	N/A
COG	UHGV-0001023_15	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0001023_15	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0001023_16	K07474	79.3	9.3e-23	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0001023_16	phrog_51	81.9	8.7e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0001023_16	UniRef90_R5AT05	325.0	0	Terminase small subunit family protein	N/A
eggNOG-mapper	UHGV-0001023_16	1268072.PSAB_06050	72.8	0.0000000000000449	terminase small subunit	N/A
Pfam	UHGV-0001023_16	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0001023_16	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0001023_16	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0001023_17	1226322.HMPREF1545_00288	73.6	8.69e-16	N/A	N/A
PHROG	UHGV-0001023_18	phrog_3584	188.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0001023_18	1226322.HMPREF1545_03841	91.3	4.53e-19	N/A	N/A
structural_annotation	UHGV-0001023_18	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001023_20	UniRef90_A0A1Q9JGI6	124.0	7.96e-34	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0001023_20	1095750.HMPREF9970_2261	130.0	7.57e-37	N/A	N/A
structural_annotation	UHGV-0001023_20	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_23	phrog_355	74.6	1.2e-21	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001023_23	UniRef90_R5AT00	223.0	0	Gp57	N/A
eggNOG-mapper	UHGV-0001023_23	1397284.AYMN01000083_gene2419	80.1	3.72e-18	N/A	N/A
Pfam	UHGV-0001023_23	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0001023_23	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
PHROG	UHGV-0001023_30	phrog_2245	104.2	1.1e-30	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0001023_30	UniRef90_A0A4U9RLZ8	90.5	7.95e-22	N/A	N/A
eggNOG-mapper	UHGV-0001023_30	293826.Amet_2596	95.5	9.22e-24	N/A	N/A
structural_annotation	UHGV-0001023_30	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
Pfam	UHGV-0001023_31	PF14359	N/A	N/A	N/A	DUF4406
KOfam	UHGV-0001023_32	K06223	226.2	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0001023_32	phrog_56	177.2	0	DNA methyltransferase	other
UniRef90	UHGV-0001023_32	UniRef90_R9MCP5	310.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0001023_32	1235799.C818_02654	310.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0001023_32	MTase_II_00030	277.5	0	Type II methyltransferase	RM
Pfam	UHGV-0001023_32	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0001023_32	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0001023_32	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0001023_33	K00558	222.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0001023_33	phrog_116	258.2	0	DNA methyltransferase	other
UniRef90	UHGV-0001023_33	UniRef90_A0A350THX9	736.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0001023_33	1121334.KB911073_gene1852	604.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0001023_33	MTase_II_00020	95.8	5.5e-31	Type II methyltransferase	RM
Pfam	UHGV-0001023_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0001023_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0001023_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0001023_34	1232449.BAHV02000016_gene1829	134.0	9.76e-39	N/A	N/A
Pfam	UHGV-0001023_35	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0001023_35	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0001023_37	phrog_3392	110.2	1.8e-32	N/A	unknown function
UniRef90	UHGV-0001023_37	UniRef90_A8AT45	100.0	1.96e-24	Gp21	N/A
eggNOG-mapper	UHGV-0001023_37	1217710.F969_00044	114.0	1.35e-28	N/A	N/A
PHROG	UHGV-0001023_39	phrog_424	99.8	3.3e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0001023_39	UniRef90_UPI001EDF1E9D	417.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0001023_39	1378168.N510_03014	348.0	0	N/A	N/A
PADLOC	UHGV-0001023_39	SspD_00001	65.0	2.6e-18	SspD	SSP
COG	UHGV-0001023_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0001023_39	PF01507,MF_00063,NF005316,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_40	phrog_38832	76.5	2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0001023_40	665956.HMPREF1032_00143	73.2	0.0000000000000535	N/A	N/A
structural_annotation	UHGV-0001023_40	PF11717,TIGR02450	N/A	N/A	N/A	N/A
KOfam	UHGV-0001023_44	K06284	110.9	7.2e-33	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0001023_44	phrog_4681	102.6	1.3e-30	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0001023_44	UniRef90_R5B3P3	176.0	0	Transcriptional regulator AbrB family	N/A
eggNOG-mapper	UHGV-0001023_44	1382304.JNIL01000001_gene2139	105.0	6.64e-29	AbrB family transcriptional regulator	N/A
Pfam	UHGV-0001023_44	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0001023_44	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0001023_44	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0001023_44	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0001023_46	phrog_7566	107.2	6.8e-32	N/A	unknown function
UniRef90	UHGV-0001023_46	UniRef90_A0A8D9UHC0	130.0	4.2e-37	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0001023_46	693746.OBV_24070	126.0	4.38e-36	N/A	N/A
KOfam	UHGV-0001023_49	K18830	53.9	0.0000000000000047	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0001023_49	UniRef90_A0A1C5PSE5	128.0	8.77e-36	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-0001023_49	445972.ANACOL_03315	110.0	2.5e-29	N/A	N/A
Pfam	UHGV-0001023_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0001023_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0001023_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0001023_51	K07729	43.1	0.0000000000087	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0001023_51	UniRef90_R5AVU4	90.5	6.26e-23	CI-like repressor	N/A
Pfam	UHGV-0001023_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0001023_51	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0001023_52	K07448	41.9	0.000000000013	mrr; restriction system protein	N/A
UniRef90	UHGV-0001023_52	UniRef90_R6IC10	355.0	0	SWIM-type domain-containing protein	N/A
Pfam	UHGV-0001023_52	PF04434	N/A	N/A	SWIM zinc finger	SWIM
Pfam	UHGV-0001023_52	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0001023_52	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-0001023_52	PF04471,MF_00722,NF002876,COG1787	N/A	N/A	N/A	N/A
KOfam	UHGV-0001023_53	K14059	220.6	0	int; integrase	N/A
PHROG	UHGV-0001023_53	phrog_1	198.3	0	integrase	integration and excision
UniRef90	UHGV-0001023_53	UniRef90_A0A212JT52	410.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-0001023_53	1507.HMPREF0262_00307	207.0	0	Phage integrase family	N/A
Pfam	UHGV-0001023_53	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0001023_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0001023_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0001023_53	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0001023	Yes	39,167	59	99	1