vOTU vOTU-063094

vOTU: vOTU-063094

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063094
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00190 → vSUBGEN-13756 → vOTU-063094
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_G
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1472264
Biosample ID	SAMEA3664618
Genome length (bp)	42,574 bps
CheckV completeness	99.90% (High-quality)
CDS count	69
CDS density	90.87%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_G	Total connections	923	Host agreement	70.42
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	21	Host agreement	95.24

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1472264_1	phrog_27197	82.1	3.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-1472264_1	394503.Ccel_3068	59.7	0.00000000217	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1472264_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1472264_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472264_2	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472264_6	PF06718	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_8	phrog_7838	116.6	1.7e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472264_8	UniRef90_A0A8D9UGW3	176.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1472264_8	742767.HMPREF9456_02052	139.0	2.1e-38	N/A	N/A
structural_annotation	UHGV-1472264_8	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-1472264_9	K03111	136.4	3.09999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1472264_9	phrog_44	138.9	2.59997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472264_9	UniRef90_D4K451	276.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1472264_9	718252.FP2_06770	276.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1472264_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1472264_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1472264_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1472264_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1472264_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_10	phrog_5968	115.4	4.1e-34	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472264_10	UniRef90_A0A2V2FW01	209.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1472264_10	718252.FP2_01000	201.0	0	N/A	N/A
Pfam	UHGV-1472264_10	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
COG	UHGV-1472264_10	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1472264_10	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472264_11	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_13	phrog_757	189.8	0	DNA methyltransferase	other
UniRef90	UHGV-1472264_13	UniRef90_A0A374BFJ7	293.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1472264_13	748224.HMPREF9436_03069	273.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1472264_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1472264_13	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_15	phrog_3136	115.1	3.4e-34	N/A	unknown function
UniRef90	UHGV-1472264_15	UniRef90_A0A6N7TMC2	229.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1472264_15	1235793.C809_02645	54.7	0.00000212	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1472264_15	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1472264_15	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1472264_16	K01160	55.9	0.0000000000000012	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1472264_16	phrog_34	57.8	2.3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472264_16	UniRef90_A0A6N7TND6	223.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1472264_16	875454.BAEW01000002_gene491	135.0	1.8e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1472264_16	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1472264_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1472264_16	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_18	phrog_36	56.8	4e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1472264_18	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472264_19	UniRef90_UPI0018CC2891	117.0	7.31e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1472264_19	1235790.C805_00037	110.0	7.35e-29	N/A	N/A
structural_annotation	UHGV-1472264_19	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1472264_20	K06909	143.2	2.29953e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1472264_20	phrog_10250	171.6	0	N/A	unknown function
UniRef90	UHGV-1472264_20	UniRef90_A0A844D8I4	845.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1472264_20	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1472264_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1472264_20	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1472264_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1472264_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1472264_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_21	phrog_64	116.8	7.5e-35	portal protein	head and packaging
UniRef90	UHGV-1472264_21	UniRef90_A0A6N7TNT3	883.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1472264_21	1042156.CXIVA_01850	77.4	0.00000000000239	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1472264_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1472264_21	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_23	phrog_2468	83.4	2.3e-24	head morphogenesis	head and packaging
UniRef90	UHGV-1472264_23	UniRef90_A0A6N7TLR7	638.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1472264_23	1504822.CCNO01000013_gene286	112.0	1.35e-24	cell adhesion	N/A
Pfam	UHGV-1472264_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1472264_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472264_23	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_25	phrog_8680	199.0	0	N/A	unknown function
UniRef90	UHGV-1472264_25	UniRef90_A0A844D688	449.0	0	N/A	N/A
eggNOG-mapper	UHGV-1472264_25	1423790.BN53_04265	179.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1472264_25	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1472264_25	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1472264_25	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_27	phrog_5	51.2	0.000000000000027	tail completion or Neck1 protein	connector
UniRef90	UHGV-1472264_27	UniRef90_A0A6N7TNP6	295.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1472264_27	1123309.AQYB01000018_gene814	94.7	7.04e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1472264_27	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1472264_27	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_30	phrog_544	129.7	2.2e-38	major head protein	head and packaging
UniRef90	UHGV-1472264_30	UniRef90_A0A395X7A1	367.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1472264_30	476272.RUMHYD_01776	300.0	0	N/A	N/A
structural_annotation	UHGV-1472264_30	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_32	phrog_17977	43.9	0.0000000000033	N/A	unknown function
UniRef90	UHGV-1472264_32	UniRef90_A0A844DHJ8	119.0	1.63e-32	Phage head closure protein	N/A
structural_annotation	UHGV-1472264_32	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472264_33	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_34	phrog_885	53.3	0.0000000000000029	major tail protein	tail
eggNOG-mapper	UHGV-1472264_34	1504822.CCNO01000012_gene492	97.1	1.92e-22	N/A	N/A
structural_annotation	UHGV-1472264_34	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_37	phrog_28775	121.9	2.8e-36	tail length tape measure protein	tail
UniRef90	UHGV-1472264_37	UniRef90_A0A844DDD5	644.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1472264_37	1492737.FEM08_12070	138.0	3.91e-31	tape measure	N/A
Pfam	UHGV-1472264_37	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1472264_37	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1472264_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1472264_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_38	phrog_3558	274.8	0	tail protein	tail
UniRef90	UHGV-1472264_38	UniRef90_UPI001C01D15B	678.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1472264_38	1120933.ATUY01000002_gene164	156.0	9.66e-38	Prophage endopeptidase tail	N/A
Pfam	UHGV-1472264_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1472264_38	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1472264_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472264_39	1235792.C808_00094	90.5	7.25e-20	phage tail	N/A
COG	UHGV-1472264_39	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1472264_39	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_40	phrog_5302	133.9	3.7e-40	tail protein	tail
UniRef90	UHGV-1472264_40	UniRef90_UPI001CBAF2B2	402.0	0	carboxypeptidase-like regulatory domain-containing protein	N/A
eggNOG-mapper	UHGV-1472264_40	1203606.HMPREF1526_00261	527.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1472264_40	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1472264_40	PF12985	N/A	N/A	N/A	N/A
KOfam	UHGV-1472264_41	K00986	101.3	1.1e-29	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1472264_41	phrog_1423	179.3	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472264_41	UniRef90_R8W3R1	602.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1472264_41	1203606.HMPREF1526_00259	602.0	0	COG COG3344 Retron-type reverse transcriptase	N/A
PADLOC	UHGV-1472264_41	icity0040	68.8	1.3e-19	RT (reverse transcriptase)	CRISPR-CAS
COG	UHGV-1472264_41	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1472264_41	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472264_42	UniRef90_UPI001D07AB37	81.3	3.05e-19	XkdX family protein	N/A
eggNOG-mapper	UHGV-1472264_42	718252.FP2_16990	80.1	1.47e-19	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1472264_42	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1472264_42	PF09693	N/A	N/A	N/A	N/A
KOfam	UHGV-1472264_43	K07273	167.1	0	acm; lysozyme	N/A
PHROG	UHGV-1472264_43	phrog_291	126.9	1.7e-37	endolysin	lysis
UniRef90	UHGV-1472264_43	UniRef90_A0A564U0D3	442.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1472264_43	718252.FP2_04890	258.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1472264_43	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1472264_43	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1472264_43	PF01183,NF003812,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_44	phrog_1863	77.6	7.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-1472264_44	718252.FP2_04900	151.0	0	N/A	N/A
PHROG	UHGV-1472264_45	phrog_15303	78.4	7.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-1472264_47	1304874.JAFY01000007_gene1737	77.0	0.0000000000000216	N/A	N/A
PHROG	UHGV-1472264_50	phrog_3754	98.4	5.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-1472264_50	1235790.C805_00054	109.0	3.71e-29	N/A	N/A
PHROG	UHGV-1472264_51	phrog_21718	113.4	1.7e-33	N/A	unknown function
eggNOG-mapper	UHGV-1472264_51	397290.C810_05210	93.6	5.26e-22	N/A	N/A
PHROG	UHGV-1472264_52	phrog_22984	77.4	5.2e-23	N/A	unknown function
PHROG	UHGV-1472264_53	phrog_16490	160.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1472264_53	1408437.JNJN01000043_gene803	134.0	8.8e-36	N/A	N/A
PHROG	UHGV-1472264_54	phrog_20016	202.7	0	N/A	unknown function
UniRef90	UHGV-1472264_54	UniRef90_A0A285PT46	213.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1472264_54	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-1472264_54	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472264_55	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1472264_57	K14059	133.9	1.9e-39	int; integrase	N/A
PHROG	UHGV-1472264_57	phrog_1	162.5	0	integrase	integration and excision
UniRef90	UHGV-1472264_57	UniRef90_A0A6N7TNQ4	703.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1472264_57	411471.SUBVAR_05137	263.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1472264_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1472264_57	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1472264_57	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472264_58	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1472264_58	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-1472264_58	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472264_61	748224.HMPREF9436_01443	323.0	0	vancomycin resistance protein	N/A
COG	UHGV-1472264_61	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
PHROG	UHGV-1472264_64	phrog_8	45.7	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-1472264_64	UniRef90_UPI001966F1BB	87.4	1.05e-19	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1472264_64	1226322.HMPREF1545_00148	79.7	9.85e-18	Transcriptional	N/A
Pfam	UHGV-1472264_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1472264_64	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1472264_64	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472264_65	UniRef90_A0A1C7FQD9	81.3	9.02e-19	Transcriptional regulator	N/A
Pfam	UHGV-1472264_65	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1472264_65	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_68	phrog_463	218.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-1472264_68	UniRef90_UPI00156FBCEE	280.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1472264_68	411490.ANACAC_00813	228.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1472264_68	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1472264_68	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1472264_68	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1472264_68	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1472264_69	phrog_4433	175.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1472264_69	33035.JPJF01000122_gene2458	102.0	3.08e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1472264_69	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1472264_69	NF000318	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1472264	Yes	42,574	56	100	1
UHGV-1383802	No	36,111	56	86	1
UHGV-2125584	No	33,769	56	80	1