vOTU vOTU-063467

vOTU: vOTU-063467

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063467
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00478 → vGENUS-00461 → vSUBGEN-35624 → vOTU-063467
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0026698
Biosample ID	N/A
Genome length (bp)	40,977 bps
CheckV completeness	97.73% (High-quality)
CDS count	56
CDS density	93.13%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	35	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma sp900548145	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0026698_1	1095750.HMPREF9970_1674	58.2	0.0000000011	N/A	N/A
KOfam	UHGV-0026698_2	K03111	148.4	7.14662e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0026698_2	phrog_44	147.3	8.40779e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026698_2	UniRef90_A0A1C5QDM6	208.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0026698_2	1226322.HMPREF1545_04080	209.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0026698_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0026698_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0026698_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0026698_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0026698_2	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_3	phrog_7370	58.6	9.9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026698_3	UniRef90_UPI001C122365	134.0	1.25e-38	HNH endonuclease	N/A
Pfam	UHGV-0026698_3	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0026698_4	phrog_72	72.9	4.1e-21	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026698_4	UniRef90_A0A8D9PDS2	181.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0026698_4	445972.ANACOL_01825	157.0	0	N/A	N/A
structural_annotation	UHGV-0026698_4	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_5	phrog_155	124.6	9e-37	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026698_5	UniRef90_A0A3D1PJF8	231.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0026698_5	1304866.K413DRAFT_1196	202.0	0	ERF superfamily	N/A
Pfam	UHGV-0026698_5	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0026698_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0026698_5	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_6	phrog_253	84.8	1.2e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026698_6	UniRef90_A0A1C5N4H2	142.0	2.32e-40	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0026698_6	1410670.JHXF01000015_gene2268	90.9	5.06e-21	Siphovirus Gp157	N/A
Pfam	UHGV-0026698_6	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0026698_6	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_7	phrog_4973	48.3	0.00000000000017	N/A	unknown function
UniRef90	UHGV-0026698_7	UniRef90_A0A3D3Y5F2	68.2	0.000000000000131	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0026698_7	935261.JAGL01000009_gene1175	46.2	0.00000867	Helix-turn-helix domain	N/A
Pfam	UHGV-0026698_7	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0026698_7	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026698_11	UniRef90_UPI001EDEB2FF	75.1	5.4e-16	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0026698_11	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026698_12	UniRef90_A0A7X9BRV4	53.1	0.000000227	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0026698_12	411473.RUMCAL_01355	52.4	0.000000361	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0026698_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0026698_12	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_14	phrog_8	41.9	0.00000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0026698_14	UniRef90_A0A845R7R6	95.9	9.96e-23	XRE family transcriptional regulator	N/A
Pfam	UHGV-0026698_14	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0026698_14	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0026698_15	PF10754	N/A	N/A	N/A	N/A
Pfam	UHGV-0026698_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026698_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0026698_16	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0026698_17	K14059	233.2	0	int; integrase	N/A
PHROG	UHGV-0026698_17	phrog_1	206.6	0	integrase	integration and excision
UniRef90	UHGV-0026698_17	UniRef90_UPI001C124E9B	410.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0026698_17	1226322.HMPREF1545_00144	368.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0026698_17	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0026698_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0026698_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0026698_17	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0026698_18	1408437.JNJN01000043_gene801	66.6	0.000000000027	N/A	N/A
structural_annotation	UHGV-0026698_19	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_20	phrog_16490	62.7	8.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0026698_20	476272.RUMHYD_01770	60.1	0.0000000232	N/A	N/A
PHROG	UHGV-0026698_21	phrog_22984	49.4	0.000000000000088	N/A	unknown function
UniRef90	UHGV-0026698_23	UniRef90_A0A8D9PDQ3	81.6	7.57e-19	ECF sigma factor	N/A
structural_annotation	UHGV-0026698_23	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_24	phrog_22978	1182.3	0	N/A	unknown function
UniRef90	UHGV-0026698_24	UniRef90_A0A2V2FDI6	369.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0026698_24	1410650.JHWL01000003_gene2814	331.0	0	N/A	N/A
Pfam	UHGV-0026698_24	PF13699	N/A	N/A	N/A	DUF4157
eggNOG-mapper	UHGV-0026698_25	1519439.JPJG01000060_gene1904	95.1	8e-18	N/A	N/A
Pfam	UHGV-0026698_26	PF07889	N/A	N/A	N/A	DUF1664
PHROG	UHGV-0026698_27	phrog_511	231.7	0	internal virion protein	head and packaging
UniRef90	UHGV-0026698_27	UniRef90_A0A8D9UH72	539.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0026698_27	1226322.HMPREF1545_00785	353.0	0	N/A	N/A
structural_annotation	UHGV-0026698_27	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_28	phrog_12105	107.0	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0026698_28	1226322.HMPREF1545_03850	70.9	0.0000000000000454	N/A	N/A
KOfam	UHGV-0026698_29	K08640	99.9	2.4e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0026698_29	phrog_18955	151.9	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0026698_29	UniRef90_UPI001C035E39	616.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0026698_29	1235797.C816_04171	335.0	0	Peptidase M15	N/A
Pfam	UHGV-0026698_29	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0026698_29	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0026698_29	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026698_29	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_30	phrog_199	90.2	2.2e-26	holin	lysis
UniRef90	UHGV-0026698_30	UniRef90_K1UL76	262.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-0026698_30	411467.BACCAP_00280	142.0	2.48997e-41	Bacteriophage holin family	N/A
Pfam	UHGV-0026698_30	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0026698_30	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0026698_30	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0026698_30	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_32	phrog_10993	205.0	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0026698_32	UniRef90_K1UI43	332.0	0	N/A	N/A
eggNOG-mapper	UHGV-0026698_32	742738.HMPREF9460_02534	204.0	0	N/A	N/A
Pfam	UHGV-0026698_32	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0026698_32	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_33	phrog_37900	70.6	2.3e-22	N/A	unknown function
UniRef90	UHGV-0026698_33	UniRef90_UPI00051B4A1C	310.0	0	N/A	N/A
eggNOG-mapper	UHGV-0026698_33	1519439.JPJG01000060_gene1894	310.0	0	N/A	N/A
Pfam	UHGV-0026698_33	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0026698_33	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0026698_33	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026698_34	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_36	phrog_1357	271.8	0	major head protein	head and packaging
UniRef90	UHGV-0026698_36	UniRef90_UPI001D02EBA7	461.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0026698_36	1203606.HMPREF1526_02746	357.0	0	N/A	N/A
Pfam	UHGV-0026698_36	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0026698_36	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0026698_36	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_37	phrog_13908	242.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0026698_37	1410650.JHWL01000003_gene2831	101.0	4.24e-22	N/A	N/A
KOfam	UHGV-0026698_38	K07584	56.2	4.3e-16	N/A	N/A
PHROG	UHGV-0026698_38	phrog_4478	48.8	0.000000000000049	peptidase	other
UniRef90	UHGV-0026698_38	UniRef90_UPI001956F6CB	62.0	0.000000000391	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0026698_38	1304880.JAGB01000002_gene2061	62.4	0.0000000000465	Cysteine protease Prp	N/A
Pfam	UHGV-0026698_38	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0026698_38	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026698_38	PF04327,NF011125,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_39	phrog_156	318.6	0	portal protein	head and packaging
UniRef90	UHGV-0026698_39	UniRef90_A0A8D9UH10	623.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0026698_39	748224.HMPREF9436_02547	506.0	0	N/A	N/A
structural_annotation	UHGV-0026698_39	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0026698_40	K06909	97.9	1.2e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0026698_40	phrog_979	195.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0026698_40	UniRef90_UPI001BB47C17	793.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0026698_40	748224.HMPREF9436_01395	619.0	0	Terminase-like family	N/A
Pfam	UHGV-0026698_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0026698_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0026698_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_41	phrog_606	73.6	2.8e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0026698_41	UniRef90_UPI0004BAB6EB	167.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0026698_41	397290.C810_05185	146.0	1.36066e-42	DNA-packaging protein gp3	N/A
Pfam	UHGV-0026698_41	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0026698_41	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_42	phrog_872	142.9	1.68156e-44	N/A	unknown function
UniRef90	UHGV-0026698_42	UniRef90_A0A8J6M9F5	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0026698_42	1519439.JPJG01000060_gene1880	169.0	0	N/A	N/A
Pfam	UHGV-0026698_42	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0026698_42	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0026698_42	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-0026698_44	K22300	47.9	0.00000000000028	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0026698_44	phrog_8	66.4	6.9e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0026698_44	UniRef90_A0A8D9PDC4	122.0	5.11e-35	Repressor protein	N/A
eggNOG-mapper	UHGV-0026698_44	351627.Csac_2097	60.8	0.000000000381	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0026698_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026698_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0026698_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0026698_45	K02647	59.1	6.1e-17	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-0026698_45	UniRef90_UPI00164DE10C	58.2	0.00000000087	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0026698_45	411459.RUMOBE_03347	53.1	0.000000262	PucR C-terminal helix-turn-helix domain	N/A
Pfam	UHGV-0026698_45	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-0026698_45	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0026698_45	PF13556,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026698_48	UniRef90_A0A8D9PDK2	59.7	0.00000000141	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0026698_49	phrog_38832	64.9	6.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0026698_49	445972.ANACOL_00165	66.6	0.0000000000422	N/A	N/A
structural_annotation	UHGV-0026698_49	PF10781	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026698_51	UniRef90_A0A8D9PDK1	57.8	0.0000000038	Anti-repressor	N/A
PHROG	UHGV-0026698_52	phrog_757	177.0	0	DNA methyltransferase	other
UniRef90	UHGV-0026698_52	UniRef90_A0A3E2U1Y9	301.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0026698_52	748224.HMPREF9436_03069	262.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0026698_52	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0026698_52	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0026698_53	phrog_6802	85.5	5.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0026698_53	1327985.R9ZZJ1_9CAUD	58.2	0.00000000449	N/A	N/A
KOfam	UHGV-0026698_55	K01160	44.7	0.0000000000034	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0026698_55	phrog_4632	70.9	1.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026698_55	UniRef90_A0A7X8IB41	119.0	2.16e-32	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0026698_55	469604.HMPREF0946_00819	62.8	0.0000000000567	N/A	N/A
structural_annotation	UHGV-0026698_55	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0026698	Yes	40,977	56	98	1