vOTU vOTU-063496

vOTU: vOTU-063496

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063496
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900548615
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02271 → vGENUS-02693 → vSUBGEN-06592 → vOTU-063496
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Merdibacter → Merdibacter merdipullorum
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0184003
Biosample ID	SAMEA2737819
Genome length (bp)	31,622 bps
CheckV completeness	93.94% (High-quality)
CDS count	50
CDS density	92.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Merdibacter → Merdibacter merdipullorum	Total connections	2	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900548615	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0184003_1	phrog_361	64.6	1.8e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0184003_1	UniRef90_A0A1C6H6I9	155.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0184003_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0184003_1	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0184003_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_2	phrog_9	292.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0184003_2	UniRef90_A0A0D8IV16	1026.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0184003_2	1226322.HMPREF1545_00113	877.0	0	Phage Terminase	N/A
Pfam	UHGV-0184003_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0184003_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0184003_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0184003_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_3	phrog_12	174.8	0	portal protein	head and packaging
UniRef90	UHGV-0184003_3	UniRef90_A0A1C6CHY3	511.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0184003_3	1226322.HMPREF1545_00114	455.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0184003_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0184003_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0184003_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0184003_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0184003_4	K06904	159.4	0	N/A	N/A
PHROG	UHGV-0184003_4	phrog_80	181.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0184003_4	UniRef90_A0A3D2W384	162.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0184003_4	358681.BBR47_29160	147.0	2.86986e-42	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0184003_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0184003_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0184003_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0184003_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_5	phrog_10	205.9	0	major head protein	head and packaging
UniRef90	UHGV-0184003_5	UniRef90_UPI000679B959	685.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0184003_5	1226322.HMPREF1545_00116	604.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0184003_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0184003_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0184003_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0184003_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0184003_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_6	phrog_2550	73.5	1.7e-21	N/A	unknown function
UniRef90	UHGV-0184003_6	UniRef90_R5V091	77.0	1.59e-16	Phage related protein	N/A
eggNOG-mapper	UHGV-0184003_6	1226322.HMPREF1545_00117	84.7	2.46e-20	N/A	N/A
structural_annotation	UHGV-0184003_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_7	phrog_19734	82.8	4.4e-24	N/A	unknown function
UniRef90	UHGV-0184003_7	UniRef90_A0A8G1TQJ2	76.6	7.24e-16	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0184003_7	33035.JPJF01000039_gene275	76.6	1.21e-16	N/A	N/A
structural_annotation	UHGV-0184003_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0184003_8	1232446.BAIE02000002_gene829	77.8	2.15e-17	N/A	N/A
UniRef90	UHGV-0184003_9	UniRef90_A0A1C6FG30	118.0	9.56e-31	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0184003_9	908340.HMPREF9406_2573	111.0	4.94e-29	N/A	N/A
structural_annotation	UHGV-0184003_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_10	phrog_88	64.8	1.1e-18	major tail protein	tail
UniRef90	UHGV-0184003_10	UniRef90_UPI00148B0F18	63.9	0.00000000308	major tail protein	N/A
COG	UHGV-0184003_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184003_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_13	phrog_10613	71.7	1.4e-20	tail length tape measure protein	tail
UniRef90	UHGV-0184003_13	UniRef90_A0A1Y4R6K5	74.3	0.000000000676	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0184003_13	1160721.RBI_II00528	212.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0184003_13	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0184003_13	TIGR01760,NF033928	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_14	phrog_33	63.2	7e-18	distal tail protein Dit	tail
UniRef90	UHGV-0184003_14	UniRef90_A0A2X2UUQ3	121.0	7.18e-30	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0184003_14	203119.Cthe_1708	88.6	1.91e-18	Phage tail protein	N/A
COG	UHGV-0184003_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0184003_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_15	phrog_1067	269.7	0	minor head protein	head and packaging
UniRef90	UHGV-0184003_15	UniRef90_A0A316NPB5	401.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0184003_15	1160721.RBI_I01574	274.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0184003_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0184003_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0184003_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0184003_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0184003_18	K01447	77.6	2.1e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0184003_18	phrog_1794	148.3	6.44597e-44	amidase	lysis
UniRef90	UHGV-0184003_18	UniRef90_UPI00049795D9	177.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0184003_18	658088.HMPREF0987_01102	159.0	2.88667e-43	Ami_2	N/A
Pfam	UHGV-0184003_18	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0184003_18	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0184003_18	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0184003_18	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0184003_18	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_19	phrog_199	89.0	4.9e-26	holin	lysis
UniRef90	UHGV-0184003_19	UniRef90_A0A5R9MH90	181.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0184003_19	742740.HMPREF9474_02333	172.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0184003_19	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0184003_19	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0184003_19	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0184003_19	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0184003_20	1273103.NM10_00919	80.5	5.44e-18	N/A	N/A
PHROG	UHGV-0184003_22	phrog_25567	53.8	0.0000000000000028	N/A	unknown function
UniRef90	UHGV-0184003_22	UniRef90_UPI00164AED9E	103.0	3.24e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0184003_22	1408306.JHXX01000021_gene3140	54.3	0.0000000547	sequence-specific DNA binding	N/A
Pfam	UHGV-0184003_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0184003_22	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0184003_22	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0184003_25	K14059	135.3	8.4e-40	int; integrase	N/A
PHROG	UHGV-0184003_25	phrog_1	162.1	0	integrase	integration and excision
UniRef90	UHGV-0184003_25	UniRef90_A0A3D4D8C4	454.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0184003_25	693746.OBV_19730	384.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0184003_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0184003_25	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0184003_25	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184003_26	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_27	phrog_4852	61.4	6.5e-18	N/A	unknown function
UniRef90	UHGV-0184003_27	UniRef90_A0A1Q9JQN0	116.0	8.75e-28	DZANK-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0184003_27	397287.C807_03353	97.4	2.59e-21	response to antibiotic	N/A
Pfam	UHGV-0184003_27	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
COG	UHGV-0184003_27	COG4640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184003_27	PF12729	N/A	N/A	N/A	N/A
KOfam	UHGV-0184003_28	K22300	47.8	0.0000000000003	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0184003_28	UniRef90_UPI0013DE7A28	92.0	2.21e-21	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0184003_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0184003_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0184003_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0184003_31	742738.HMPREF9460_00848	117.0	1.55e-32	N/A	N/A
structural_annotation	UHGV-0184003_31	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_35	phrog_21498	303.1	0	N/A	unknown function
UniRef90	UHGV-0184003_35	UniRef90_C7MM70	234.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0184003_35	469378.Ccur_02830	234.0	0	DNA binding	N/A
COG	UHGV-0184003_35	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0184003_35	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_39	phrog_24368	41.7	0.000000000018	N/A	unknown function
PHROG	UHGV-0184003_42	phrog_36399	85.1	8.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0184003_42	1226322.HMPREF1545_00099	73.9	0.00000000000000197	N/A	N/A
PHROG	UHGV-0184003_43	phrog_8470	261.9	0	N/A	unknown function
UniRef90	UHGV-0184003_43	UniRef90_UPI0019580896	397.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0184003_43	1226322.HMPREF1545_00100	347.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0184003_43	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0184003_43	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_44	phrog_15609	222.5	0	N/A	unknown function
UniRef90	UHGV-0184003_44	UniRef90_UPI001C12751D	142.0	1.97e-36	N/A	N/A
eggNOG-mapper	UHGV-0184003_44	1395513.P343_08065	133.0	9.28e-34	N/A	N/A
Pfam	UHGV-0184003_44	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0184003_44	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0184003_44	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0184003_48	phrog_3584	107.0	1.8e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0184003_48	693746.OBV_25240	222.0	0	N/A	N/A
structural_annotation	UHGV-0184003_48	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0184003_50	K07451	47.1	0.00000000000044	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0184003_50	phrog_119	88.2	9.6e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184003_50	UniRef90_A0A0D8IV26	122.0	1.38e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0184003_50	1226322.HMPREF1545_00111	116.0	3.26e-33	HNH nucleases	N/A
Pfam	UHGV-0184003_50	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0184003_50	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0184003_50	TIGR02646	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0184003	Yes	31,622	63	94	1
UHGV-0079585	No	31,587	63	94	1
UHGV-2037441	No	31,379	63	93	1