vOTU vOTU-063509

vOTU: vOTU-063509

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063509
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vSUBGEN-38369 → vOTU-063509
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0024493
Biosample ID	SAMEA4766022
Genome length (bp)	44,064 bps
CheckV completeness	98.01% (High-quality)
CDS count	69
CDS density	86.65%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	287	Host agreement	98.26
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella sp003436425	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0024493_1	K01447	60.4	3.8e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0024493_1	phrog_7698	154.6	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0024493_1	UniRef90_UPI001D0AA402	546.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0024493_1	1125712.HMPREF1316_2631	144.0	3.38999e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0024493_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0024493_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0024493_1	COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_3	phrog_443	52.1	0.000000000000017	holin	lysis
UniRef90	UHGV-0024493_3	UniRef90_A0A2U2ELA1	77.8	1.85e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-0024493_3	476272.RUMHYD_01759	84.0	1.55e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0024493_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0024493_3	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_5	phrog_20016	61.1	1.4e-17	N/A	unknown function
UniRef90	UHGV-0024493_5	UniRef90_A0A395WF88	254.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0024493_5	1226322.HMPREF1545_00077	60.5	0.00000000115	N/A	N/A
Pfam	UHGV-0024493_5	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0024493_5	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024493_6	UniRef90_A0A8F0WFQ8	68.9	0.000000000186	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0024493_6	476272.RUMHYD_01770	105.0	2.19e-25	N/A	N/A
eggNOG-mapper	UHGV-0024493_11	82995.CR62_10245	78.2	0.00000000000538	Right handed beta helix region	N/A
Pfam	UHGV-0024493_11	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
structural_annotation	UHGV-0024493_12	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024493_13	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024493_14	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_15	phrog_1067	52.2	4.2e-24	minor head protein	head and packaging
eggNOG-mapper	UHGV-0024493_15	1232446.BAIE02000002_gene836	60.8	0.000000744	Phage minor structural protein	N/A
Pfam	UHGV-0024493_15	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-0024493_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0024493_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0024493_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_16	phrog_33	49.5	0.000000000000097	distal tail protein Dit	tail
UniRef90	UHGV-0024493_16	UniRef90_A0A1C6JHE5	65.5	0.00000000456	Phage-related protein	N/A
Pfam	UHGV-0024493_16	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0024493_16	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0024493_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0024493_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0024493_17	K10402	44.9	0.00000000000024	KIF20; kinesin family member 20	N/A
PHROG	UHGV-0024493_17	phrog_13339	334.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0024493_17	UniRef90_A0A395WD11	1870.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0024493_17	411490.ANACAC_00710	246.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0024493_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0024493_17	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0024493_17	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0024493_17	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_18	phrog_709	46.4	0.00000000000058	N/A	unknown function
structural_annotation	UHGV-0024493_18	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_19	phrog_88	139.8	1.49995e-41	major tail protein	tail
UniRef90	UHGV-0024493_19	UniRef90_A0A395WA58	396.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0024493_19	1033744.CAEL01000029_gene1276	155.0	4.2039e-45	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0024493_19	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0024493_19	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024493_20	UniRef90_A0A374RUJ8	140.0	2.04e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0024493_20	86416.Clopa_0344	57.8	0.00000000894	N/A	N/A
structural_annotation	UHGV-0024493_20	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024493_21	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_22	phrog_1951	73.2	2.4e-21	head-tail adaptor	connector
UniRef90	UHGV-0024493_22	UniRef90_A0A395WC07	228.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0024493_22	588581.Cpap_1270	61.2	0.000000000133	N/A	N/A
NCBIFam	UHGV-0024493_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0024493_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_23	phrog_5223	46.1	0.00000000000062	neck protein	connector
UniRef90	UHGV-0024493_23	UniRef90_A0A374RXD1	84.3	2.68e-19	DNA-packaging protein	N/A
structural_annotation	UHGV-0024493_23	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_24	phrog_10	83.2	3.7e-24	major head protein	head and packaging
UniRef90	UHGV-0024493_24	UniRef90_A0A395WF70	789.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0024493_24	1536774.H70357_10630	169.0	2.8026e-45	Phage capsid family	N/A
Pfam	UHGV-0024493_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0024493_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0024493_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0024493_24	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0024493_25	K06904	87.5	1.9e-25	N/A	N/A
PHROG	UHGV-0024493_25	phrog_80	116.0	5.1e-34	head maturation protease	head and packaging
UniRef90	UHGV-0024493_25	UniRef90_A0A413UET6	350.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0024493_25	445975.COLSTE_02163	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0024493_25	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0024493_25	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0024493_25	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0024493_25	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_26	phrog_12	105.6	3.6e-31	portal protein	head and packaging
UniRef90	UHGV-0024493_26	UniRef90_A0A395W9X2	810.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0024493_26	1203606.HMPREF1526_01337	287.0	0	Portal protein	N/A
Pfam	UHGV-0024493_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0024493_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0024493_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_27	phrog_9	310.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024493_27	UniRef90_A0A395WD03	1123.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0024493_27	742740.HMPREF9474_04307	548.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0024493_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0024493_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0024493_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0024493_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_28	phrog_361	74.5	1.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0024493_28	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0024493_28	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-0024493_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0024493_28	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0024493_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_29	phrog_119	60.1	3.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024493_29	UniRef90_A0A395WA48	262.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0024493_29	1211814.CAPG01000074_gene3460	65.5	0.0000000000038	HNH endonuclease	N/A
Pfam	UHGV-0024493_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0024493_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0024493_30	phrog_4534	47.8	0.00000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0024493_34	1403948.Q618_VCMC00003G0140	106.0	1.78e-26	N/A	N/A
PHROG	UHGV-0024493_39	phrog_4525	66.6	4.6e-19	N/A	unknown function
PHROG	UHGV-0024493_40	phrog_478	107.4	8.3e-32	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0024493_40	UniRef90_A0A0J8Z1B9	176.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0024493_40	272623.L62008	80.9	9.63e-18	N/A	N/A
UniRef90	UHGV-0024493_41	UniRef90_A0A413UEX6	293.0	0	N/A	N/A
structural_annotation	UHGV-0024493_41	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024493_46	PF16789	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_47	phrog_2118	118.1	8e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024493_47	UniRef90_A0A374RH39	195.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0024493_47	610130.Closa_0730	148.0	1.26117e-44	HNH endonuclease	N/A
Pfam	UHGV-0024493_47	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0024493_47	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0024493_47	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_48	phrog_2715	124.1	8.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-0024493_48	642492.Clole_0950	122.0	2.06e-33	N/A	N/A
structural_annotation	UHGV-0024493_48	PF18406	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_53	phrog_173	87.3	2.1e-25	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024493_53	UniRef90_UPI001D0A0924	247.0	0	dUTP diphosphatase	N/A
Pfam	UHGV-0024493_53	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0024493_53	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0024493_53	PF08761,COG4508	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024493_54	PF11184	N/A	N/A	N/A	N/A
KOfam	UHGV-0024493_57	K02315	122.2	5.6e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0024493_57	phrog_50	107.6	1.4e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024493_57	UniRef90_A0A395WER8	527.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0024493_57	1211844.CBLM010000016_gene1509	135.0	8.76e-36	N/A	N/A
Pfam	UHGV-0024493_57	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0024493_57	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0024493_57	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_58	phrog_428	147.9	7.9874e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024493_58	UniRef90_A0A395WBX6	496.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0024493_58	279808.SH2379	147.0	3.17e-40	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0024493_58	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0024493_58	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0024493_58	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0024493_58	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0024493_61	K04763	133.7	2e-39	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0024493_61	phrog_1	115.2	7.2e-34	integrase	integration and excision
UniRef90	UHGV-0024493_61	UniRef90_A0A395W9T7	580.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0024493_61	908340.HMPREF9406_2589	228.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0024493_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024493_61	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0024493_61	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0024493_65	K18830	65.0	1.3e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0024493_65	phrog_8	49.6	0.000000000000066	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024493_65	UniRef90_A0A413CSI3	255.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024493_65	999413.HMPREF1094_02045	100.0	1.33e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0024493_65	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0024493_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024493_65	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0024493_66	phrog_4980	132.0	5.2e-39	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0024493_66	1120998.AUFC01000030_gene2202	85.1	1.1e-16	Membrane	N/A
Pfam	UHGV-0024493_66	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0024493_66	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0024493_66	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0024493_69	K14059	141.1	1.49995e-41	int; integrase	N/A
PHROG	UHGV-0024493_69	phrog_1	124.5	1.3e-36	integrase	integration and excision
UniRef90	UHGV-0024493_69	UniRef90_A0A395WBW7	397.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0024493_69	1235796.C815_00955	195.0	0	DNA integration	N/A
Pfam	UHGV-0024493_69	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024493_69	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024493_69	PF00589,MF_02055,TIGR02249,COG0582	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024493	Yes	44,064	33	98	1