vOTU vOTU-063608

vOTU: vOTU-063608

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063608
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-02273 → vGENUS-02694 → vSUBGEN-03378 → vOTU-063608
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp900770195
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0187623
Biosample ID	N/A
Genome length (bp)	38,337 bps
CheckV completeness	95.34% (High-quality)
CDS count	74
CDS density	92.53%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp900770195	Total connections	19	Host agreement	94.74
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0187623_1	phrog_15768	47.4	0.00000000000039	N/A	unknown function
UniRef90	UHGV-0187623_1	UniRef90_UPI001BCBF470	60.1	0.00000000234	N/A	N/A
eggNOG-mapper	UHGV-0187623_1	679935.Alfi_0671	58.2	0.00000000229	N/A	N/A
Pfam	UHGV-0187623_1	PF19808	N/A	N/A	N/A	DUF6291
KOfam	UHGV-0187623_2	K03111	132.3	5.5e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0187623_2	phrog_44	144.0	8.1976e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187623_2	UniRef90_A0A1C6B6M2	141.0	5.25001e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0187623_2	1384066.JAGT01000001_gene1404	134.0	1.15e-37	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0187623_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0187623_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0187623_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0187623_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0187623_2	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_3	phrog_659	189.3	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187623_3	UniRef90_A0A2C8EKI7	182.0	0	Prophage pi2 protein 11, topoisomerase	N/A
eggNOG-mapper	UHGV-0187623_3	1229517.AMFD01000025_gene931	185.0	0	N/A	N/A
Pfam	UHGV-0187623_3	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0187623_3	PF06378,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_4	phrog_253	77.7	1.7e-22	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187623_4	UniRef90_A0A285PT93	88.2	2.63e-19	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0187623_4	1410670.JHXF01000015_gene2268	75.9	0.00000000000000266	Siphovirus Gp157	N/A
Pfam	UHGV-0187623_4	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0187623_4	PF05565	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187623_8	PF10743	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_11	phrog_8	51.7	0.000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187623_11	UniRef90_A0A396Q779	64.3	0.0000000000583	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0187623_11	411461.DORFOR_00211	54.3	0.0000000812	sequence-specific DNA binding	N/A
Pfam	UHGV-0187623_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0187623_11	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0187623_12	K14059	212.3	0	int; integrase	N/A
PHROG	UHGV-0187623_12	phrog_1	193.9	0	integrase	integration and excision
UniRef90	UHGV-0187623_12	UniRef90_A0A7X9GK55	283.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0187623_12	86416.Clopa_1675	129.0	4.81e-31	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0187623_12	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0187623_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0187623_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0187623_12	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187623_13	UniRef90_UPI00155ADB66	61.6	0.0000000923	N/A	N/A
eggNOG-mapper	UHGV-0187623_13	1688.BCUN_1452	69.3	0.0000000000351	N/A	N/A
Pfam	UHGV-0187623_13	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-0187623_15	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_16	phrog_20016	91.7	5.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0187623_16	397290.C810_05214	69.3	0.00000000000038	N/A	N/A
structural_annotation	UHGV-0187623_16	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_17	phrog_16490	142.0	1.80067e-42	N/A	unknown function
eggNOG-mapper	UHGV-0187623_17	397290.C810_05212	58.2	0.000000496	N/A	N/A
PHROG	UHGV-0187623_18	phrog_22984	61.6	1.1e-17	N/A	unknown function
PHROG	UHGV-0187623_19	phrog_21718	87.1	2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0187623_19	397290.C810_05210	69.7	0.000000000000624	N/A	N/A
PHROG	UHGV-0187623_20	phrog_3754	80.0	2.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0187623_20	476272.RUMHYD_01764	146.0	9.80909e-44	N/A	N/A
structural_annotation	UHGV-0187623_21	COG4451	N/A	N/A	N/A	N/A
KOfam	UHGV-0187623_27	K07729	53.3	0.000000000000006	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0187623_27	phrog_5823	47.6	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187623_27	UniRef90_R6P5B8	70.1	0.0000000000000504	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0187623_27	864565.HMPREF0379_0642	65.1	0.0000000000106	N/A	N/A
Pfam	UHGV-0187623_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0187623_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0187623_27	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187623_28	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0187623_29	K07273	150.6	1.4013e-44	acm; lysozyme	N/A
PHROG	UHGV-0187623_29	phrog_291	128.4	6.8e-38	endolysin	lysis
UniRef90	UHGV-0187623_29	UniRef90_UPI001D002A5A	145.0	2.99e-38	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0187623_29	1235793.C809_03470	130.0	3.93e-31	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0187623_29	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0187623_29	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0187623_29	PF01183,PF08460,MF_00496,NF033202,NF009621,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_33	phrog_24103	53.4	0.0000000000000061	N/A	unknown function
eggNOG-mapper	UHGV-0187623_33	1111134.HMPREF1253_0369	59.7	0.000000226	beta-propeller repeat	N/A
COG	UHGV-0187623_33	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
Pfam	UHGV-0187623_35	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
COG	UHGV-0187623_35	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0187623_36	phrog_33	64.3	2.9e-18	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0187623_36	1540257.JQMW01000004_gene407	55.8	0.00000192	tail component	N/A
COG	UHGV-0187623_36	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0187623_36	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0187623_37	K08757	66.5	1.4e-22	APOA1; apolipoprotein A-I	N/A
PHROG	UHGV-0187623_37	phrog_58	188.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0187623_37	1123309.AQYB01000018_gene819	114.0	3.58e-23	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0187623_37	PF07464	N/A	N/A	Apolipophorin-III precursor (apoLp-III)	ApoLp-III
COG	UHGV-0187623_37	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0187623_38	phrog_6900	192.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0187623_38	UniRef90_A0A1P8BMM1	120.0	8.71e-31	Tail tapemeasure protein	N/A
eggNOG-mapper	UHGV-0187623_38	1123309.AQYB01000018_gene819	177.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0187623_38	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0187623_41	phrog_885	68.6	7.2e-20	major tail protein	tail
eggNOG-mapper	UHGV-0187623_41	1504822.CCNO01000012_gene492	155.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0187623_41	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187623_42	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_43	phrog_17977	52.6	0.0000000000000064	N/A	unknown function
UniRef90	UHGV-0187623_43	UniRef90_UPI00141211AB	102.0	7.44e-26	head-tail adaptor protein	N/A
structural_annotation	UHGV-0187623_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_45	phrog_544	125.3	4.9e-37	major head protein	head and packaging
UniRef90	UHGV-0187623_45	UniRef90_A0A1C6B5R0	328.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0187623_45	476272.RUMHYD_01776	296.0	0	N/A	N/A
structural_annotation	UHGV-0187623_45	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187623_46	UniRef90_A0A6B9SU02	112.0	1.33e-27	Fibronectin autolysin	N/A
structural_annotation	UHGV-0187623_46	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_47	phrog_5	63.5	5e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0187623_47	UniRef90_A0A6A8M6L6	84.7	2.17e-18	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0187623_47	1504822.CCNO01000013_gene284	74.7	9.13e-16	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0187623_47	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0187623_47	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_48	phrog_2468	102.8	8.9e-31	head morphogenesis	head and packaging
UniRef90	UHGV-0187623_48	UniRef90_A0A3D2MUF2	199.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0187623_48	1504822.CCNO01000013_gene286	155.0	5.74e-40	cell adhesion	N/A
Pfam	UHGV-0187623_48	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0187623_48	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0187623_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187623_48	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_49	phrog_64	162.9	0	portal protein	head and packaging
UniRef90	UHGV-0187623_49	UniRef90_UPI001AA0B7FF	412.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0187623_49	673376.F2VHW1_9CAUD	238.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0187623_49	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0187623_49	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_50	phrog_38	164.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0187623_50	UniRef90_R9QM30	452.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0187623_50	1140001.I571_01829	459.0	0	N/A	N/A
structural_annotation	UHGV-0187623_50	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187623_53	PF18932	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187623_54	706437.HMPREF0813_02005	79.3	1.66e-17	N/A	N/A
PHROG	UHGV-0187623_55	phrog_13321	56.4	2.8e-16	N/A	unknown function
UniRef90	UHGV-0187623_55	UniRef90_D4LDX5	491.0	0	DNA repair photolyase	N/A
eggNOG-mapper	UHGV-0187623_55	1235790.C805_00085	335.0	0	DNA photolyase activity	N/A
COG	UHGV-0187623_55	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-0187623_55	PF20903,MF_00660,NF033668,COG1180	N/A	N/A	N/A	N/A
KOfam	UHGV-0187623_56	K03497	57.7	2.9e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0187623_56	phrog_620	145.1	3.69943e-43	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187623_56	UniRef90_A0A7G7NBK6	117.0	1.15e-29	ParB N-terminal-like domain containing protein	N/A
eggNOG-mapper	UHGV-0187623_56	1123247.AUIJ01000022_gene281	114.0	2.21e-27	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0187623_56	MTase_II_00015	89.0	9.3e-26	Type II methyltransferase	RM
Pfam	UHGV-0187623_56	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0187623_56	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0187623_56	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-0187623_57	K01160	51.2	0.000000000000035	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0187623_57	phrog_1682	61.1	1.9e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187623_57	UniRef90_UPI00055C0AEA	72.0	0.000000000000129	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0187623_57	1120985.AUMI01000019_gene2247	72.0	0.0000000000000217	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0187623_57	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0187623_57	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0187623_57	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0187623_61	phrog_478	126.9	7.9e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0187623_61	UniRef90_A0A0U2WUA4	166.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0187623_61	1499683.CCFF01000017_gene2138	185.0	0	N/A	N/A
PHROG	UHGV-0187623_74	phrog_15768	86.1	5.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0187623_74	642492.Clole_0798	94.7	2.16e-22	N/A	N/A
COG	UHGV-0187623_74	COG3935	N/A	N/A	DNA replication protein DnaD	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0187623	Yes	38,337	37	95	1
UHGV-0200361	No	38,337	37	95	1