vOTU vOTU-063686

vOTU: vOTU-063686

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063686
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00099 → vGENUS-00355 → vSUBGEN-32933 → vOTU-063686
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1339214
Biosample ID	N/A
Genome length (bp)	36,451 bps
CheckV completeness	98.91% (High-quality)
CDS count	58
CDS density	90.65%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	464	Host agreement	87.5
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	26	Host agreement	73.08

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1339214_1	UniRef90_S2YRM1	138.0	6.60999e-40	N/A	N/A
eggNOG-mapper	UHGV-1339214_1	742723.HMPREF9477_00919	67.8	0.00000000000205	N/A	N/A
eggNOG-mapper	UHGV-1339214_3	411470.RUMGNA_02203	255.0	0	N/A	N/A
PHROG	UHGV-1339214_6	phrog_36	54.8	0.0000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-1339214_6	UniRef90_A0A3E4V8N2	228.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1339214_6	411470.RUMGNA_02205	214.0	0	Sigma-70, region 4	N/A
Pfam	UHGV-1339214_6	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1339214_6	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_7	phrog_309	198.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-1339214_7	UniRef90_A0A2N5PKF8	279.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1339214_7	411470.RUMGNA_02210	202.0	0	transposase activity	N/A
COG	UHGV-1339214_7	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1339214_7	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1339214_8	K06909	82.3	6.9e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1339214_8	phrog_2	87.4	2.8e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1339214_8	UniRef90_A7B3T0	872.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1339214_8	411470.RUMGNA_02211	872.0	0	N/A	N/A
Pfam	UHGV-1339214_8	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1339214_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1339214_8	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_9	phrog_533	334.1	0	portal protein	head and packaging
UniRef90	UHGV-1339214_9	UniRef90_A7B3T1	893.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1339214_9	411470.RUMGNA_02212	893.0	0	N/A	N/A
structural_annotation	UHGV-1339214_9	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_10	phrog_581	341.4	0	minor head protein	head and packaging
UniRef90	UHGV-1339214_10	UniRef90_UPI001EE14397	622.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1339214_10	411470.RUMGNA_02213	772.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1339214_10	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1339214_10	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339214_10	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1339214_11	411470.RUMGNA_02214	181.0	0	N/A	N/A
structural_annotation	UHGV-1339214_11	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_12	phrog_11541	53.6	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-1339214_12	411470.RUMGNA_02215	332.0	0	N/A	N/A
NCBIFam	UHGV-1339214_14	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1339214_14	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_15	phrog_194	108.2	9.5e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-1339214_15	UniRef90_A5KPA4	305.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1339214_15	411470.RUMGNA_02218	342.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1339214_15	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1339214_15	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_16	phrog_422	209.2	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1339214_16	411470.RUMGNA_02219	550.0	0	N/A	N/A
structural_annotation	UHGV-1339214_16	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_17	phrog_541	93.3	2.1e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-1339214_17	411470.RUMGNA_02220	198.0	0	N/A	N/A
PHROG	UHGV-1339214_18	phrog_3366	92.8	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-1339214_18	411470.RUMGNA_02221	225.0	0	N/A	N/A
Pfam	UHGV-1339214_18	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1339214_18	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_19	phrog_556	136.0	9.70007e-41	minor head protein	head and packaging
UniRef90	UHGV-1339214_19	UniRef90_UPI001C8E2A32	208.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1339214_19	411470.RUMGNA_02222	213.0	0	N/A	N/A
structural_annotation	UHGV-1339214_19	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_20	phrog_3266	155.5	0	tail completion	connector
eggNOG-mapper	UHGV-1339214_20	411470.RUMGNA_02223	271.0	0	N/A	N/A
structural_annotation	UHGV-1339214_20	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_21	phrog_3099	156.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1339214_21	411470.RUMGNA_02224	325.0	0	N/A	N/A
structural_annotation	UHGV-1339214_21	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_22	phrog_4450	111.3	6.3e-33	N/A	unknown function
UniRef90	UHGV-1339214_22	UniRef90_A0A7M2RHR3	59.7	0.00000000695	AP endonuclease	N/A
eggNOG-mapper	UHGV-1339214_22	411470.RUMGNA_02225	221.0	0	N/A	N/A
Pfam	UHGV-1339214_22	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-1339214_22	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_23	phrog_706	151.0	5.60519e-45	N/A	unknown function
UniRef90	UHGV-1339214_23	UniRef90_A7B3U5	341.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1339214_23	411470.RUMGNA_02226	341.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-1339214_23	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1339214_23	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_24	phrog_9959	161.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1339214_24	UniRef90_A0A8B3C0A6	823.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1339214_24	411470.RUMGNA_02228	826.0	0	tape measure	N/A
Pfam	UHGV-1339214_24	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1339214_24	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1339214_24	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1339214_24	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_25	phrog_202	323.7	0	distal tail protein Dit	tail
UniRef90	UHGV-1339214_25	UniRef90_A7B3U8	1009.0	0	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-1339214_25	411470.RUMGNA_02229	1009.0	0	N/A	N/A
Pfam	UHGV-1339214_25	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1339214_25	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1339214_25	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1339214_25	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_26	phrog_588	505.9	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-1339214_26	UniRef90_A7B3U9	1635.0	0	Phage minor structural protein, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1339214_26	411470.RUMGNA_02230	1635.0	0	N/A	N/A
structural_annotation	UHGV-1339214_26	PF14594,PF19081,MF_04116,TIGR01665,NF041894,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1339214_27	608534.GCWU000341_02271	56.2	0.00000000544	N/A	N/A
KOfam	UHGV-1339214_29	K01447	59.5	6.9e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1339214_29	phrog_670	169.2	0	endolysin	lysis
UniRef90	UHGV-1339214_29	UniRef90_A7B871	508.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1339214_29	411470.RUMGNA_03787	508.0	0	COG NOG33632 non supervised orthologous group	N/A
Pfam	UHGV-1339214_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1339214_29	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
structural_annotation	UHGV-1339214_29	PF01510,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-1339214_30	K22299	44.9	0.0000000000021	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1339214_30	phrog_3	41.7	0.000000000042	transcriptional repressor	transcription regulation
UniRef90	UHGV-1339214_30	UniRef90_A0A2N5NVL9	287.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1339214_30	411470.RUMGNA_03786	287.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1339214_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1339214_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1339214_30	PF01381,MF_02017,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1339214_31	411470.RUMGNA_03785	282.0	0	N/A	N/A
KOfam	UHGV-1339214_33	K06400	266.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1339214_33	phrog_95	290.3	0	integrase	integration and excision
UniRef90	UHGV-1339214_33	UniRef90_A7B3P5	1061.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1339214_33	411470.RUMGNA_02175	1061.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1339214_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1339214_33	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1339214_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1339214_33	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_34	phrog_7974	60.4	2.4e-17	N/A	unknown function
UniRef90	UHGV-1339214_34	UniRef90_A7B3P6	545.0	0	N/A	N/A
eggNOG-mapper	UHGV-1339214_34	411470.RUMGNA_02177	545.0	0	belongs to the thioredoxin family	N/A
Pfam	UHGV-1339214_34	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-1339214_34	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-1339214_34	PF14020,PF02368,COG1721	N/A	N/A	N/A	N/A
KOfam	UHGV-1339214_35	K18830	64.2	2.8e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1339214_35	phrog_4	55.4	0.0000000000000015	transcriptional repressor	transcription regulation
UniRef90	UHGV-1339214_35	UniRef90_A0A8B3BUM8	262.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1339214_35	411470.RUMGNA_02181	262.0	0	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1339214_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1339214_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1339214_35	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_37	phrog_28292	114.4	3.9e-34	N/A	unknown function
UniRef90	UHGV-1339214_37	UniRef90_A0A8B3BZ84	164.0	0	3-hydroxyacyl-CoA dehydrogenase	N/A
eggNOG-mapper	UHGV-1339214_37	500632.CLONEX_01438	135.0	5.82001e-41	N/A	N/A
KOfam	UHGV-1339214_38	K07741	136.6	3.7e-40	antB; anti-repressor protein	N/A
PHROG	UHGV-1339214_38	phrog_63	132.2	4.3e-39	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1339214_38	UniRef90_A7B3Q4	517.0	0	AntA/AntB antirepressor	N/A
eggNOG-mapper	UHGV-1339214_38	411470.RUMGNA_02184	517.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1339214_38	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1339214_38	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1339214_38	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1339214_38	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_45	phrog_253	127.4	9.1e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1339214_45	UniRef90_A7B3R2	290.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1339214_45	411470.RUMGNA_02192	290.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1339214_45	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1339214_45	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_46	phrog_14970	286.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1339214_46	411470.RUMGNA_02193	275.0	0	double-strand break repair protein	N/A
COG	UHGV-1339214_46	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1339214_46	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_47	phrog_72	49.4	0.000000000000073	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1339214_47	411470.RUMGNA_02194	331.0	0	N/A	N/A
structural_annotation	UHGV-1339214_47	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_48	phrog_7566	65.5	5.5e-19	N/A	unknown function
UniRef90	UHGV-1339214_48	UniRef90_A0A2N5NVH0	243.0	0	Phosphoenolpyruvate carboxykinase	N/A
KOfam	UHGV-1339214_49	K01160	57.0	5.8e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1339214_49	phrog_140	134.2	6.89999e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1339214_49	UniRef90_A7B3R6	261.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1339214_49	411470.RUMGNA_02196	261.0	0	COG COG4570 Holliday junction resolvase	N/A
Pfam	UHGV-1339214_49	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1339214_49	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1339214_49	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_50	phrog_1163	233.8	0	N/A	unknown function
UniRef90	UHGV-1339214_50	UniRef90_A0A415S878	542.0	0	Replication protein	N/A
eggNOG-mapper	UHGV-1339214_50	1042163.BRLA_c031420	189.0	0	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1339214_50	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-1339214_50	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1339214_50	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1339214_50	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-1339214_50	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_51	phrog_2600	120.8	1.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-1339214_51	1178540.BA70_18565	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-1339214_53	97139.C824_00033	57.8	0.00000000162	N/A	N/A
PHROG	UHGV-1339214_54	phrog_15471	47.2	0.00000000000031	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1339214_54	UniRef90_A0A2N5NVP1	333.0	0	HNHc domain-containing protein	N/A
Pfam	UHGV-1339214_54	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1339214_54	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_55	phrog_599	45.5	0.0000000000016	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1339214_55	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1339214_55	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1339214_55	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1339214_55	PF14354,TIGR03655,COG3811	N/A	N/A	N/A	N/A
PHROG	UHGV-1339214_57	phrog_8684	105.7	2.7e-31	N/A	unknown function
UniRef90	UHGV-1339214_57	UniRef90_F7K050	331.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1339214_57	411470.RUMGNA_02199	318.0	0	N/A	N/A
Pfam	UHGV-1339214_57	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1339214_57	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1339214_57	PF09643,TIGR01671	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1339214	Yes	36,451	42	99	1
UHGV-0465653	No	36,450	42	99	1