vOTU vOTU-063705

vOTU: vOTU-063705

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063705
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-19322 → vOTU-063705
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1992297
Biosample ID	N/A
Genome length (bp)	41,888 bps
CheckV completeness	99.90% (High-quality)
CDS count	67
CDS density	90.81%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	489	Host agreement	98.57
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1992297_1	K14059	200.5	0	int; integrase	N/A
PHROG	UHGV-1992297_1	phrog_1	176.2	0	integrase	integration and excision
UniRef90	UHGV-1992297_1	UniRef90_A0A367GI93	246.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_1	1507.HMPREF0262_00307	186.0	0	Phage integrase family	N/A
Pfam	UHGV-1992297_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1992297_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1992297_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1992297_2	K07729	40.8	0.000000000019	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1992297_2	phrog_1373	44.9	0.00000000000084	transcriptional regulator	transcription regulation
UniRef90	UHGV-1992297_2	UniRef90_A0A2A7AM70	186.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1992297_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1992297_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1992297_2	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1992297_5	K02342	41.7	0.000000000013	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1992297_5	phrog_192	56.5	5.4e-16	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1992297_5	1121333.JMLH01000063_gene1384	82.0	0.0000000000000113	SWIM zinc finger	N/A
COG	UHGV-1992297_5	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-1992297_5	PF00929,PF00533,MF_00157,NF004844,COG0847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1992297_9	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_10	phrog_8	45.8	0.0000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-1992297_10	UniRef90_A0A2A7AM72	132.0	4.86e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_10	1378168.N510_01712	72.4	0.0000000000000753	N/A	N/A
Pfam	UHGV-1992297_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1992297_10	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1992297_11	UniRef90_UPI000BEF0F65	70.9	0.00000000000000636	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1992297_11	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-1992297_14	PF12773	N/A	N/A	Double zinc ribbon	DZR
PHROG	UHGV-1992297_16	phrog_32852	40.1	0.000000000047	N/A	unknown function
eggNOG-mapper	UHGV-1992297_18	596152.DesU5LDRAFT_1910	98.2	1.35e-22	N/A	N/A
structural_annotation	UHGV-1992297_18	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_21	phrog_14970	44.9	0.0000000000021	N/A	unknown function
COG	UHGV-1992297_21	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1992297_21	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_22	phrog_72	47.5	0.00000000000034	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1992297_22	411471.SUBVAR_05829	135.0	5.88e-38	N/A	N/A
structural_annotation	UHGV-1992297_22	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1992297_23	PF09723	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_25	phrog_7566	84.8	6.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-1992297_25	411471.SUBVAR_05830	103.0	1.3e-27	N/A	N/A
KOfam	UHGV-1992297_26	K03111	150.1	2.24208e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1992297_26	phrog_44	155.0	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1992297_26	UniRef90_A0A2A7ALU9	207.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1992297_26	748224.HMPREF9436_00638	213.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1992297_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1992297_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1992297_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1992297_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1992297_26	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_27	phrog_6969	57.1	2.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-1992297_27	748224.HMPREF9436_00735	157.0	1.61149e-43	N/A	N/A
Pfam	UHGV-1992297_27	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-1992297_27	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-1992297_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1992297_27	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-1992297_29	K03496	204.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1992297_29	phrog_164	151.1	7.00649e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1992297_29	UniRef90_A0A2A7B6H3	358.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_29	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-1992297_29	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1992297_29	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1992297_29	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1992297_30	K03497	87.6	2.5e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1992297_30	phrog_4715	110.8	9.3e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1992297_30	UniRef90_A0A2A7B6Q0	366.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_30	411471.SUBVAR_05842	183.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1992297_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1992297_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1992297_30	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1992297_31	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_32	phrog_30559	51.0	0.000000000000029	N/A	unknown function
PHROG	UHGV-1992297_36	phrog_3136	128.6	1.5e-38	N/A	unknown function
UniRef90	UHGV-1992297_36	UniRef90_A0A329TS47	112.0	1.49e-27	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_36	1007096.BAGW01000031_gene120	55.5	0.000000981	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1992297_36	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1992297_36	PF04266,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_38	phrog_119	57.8	1.7e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1992297_38	UniRef90_A0A2A7B6I3	224.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_38	610130.Closa_0739	107.0	1.73e-28	HNH nucleases	N/A
Pfam	UHGV-1992297_38	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1992297_38	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1992297_39	phrog_13845	56.7	3.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1992297_39	1399942.U3PDR2_9CAUD	67.4	0.000000000000803	N/A	N/A
structural_annotation	UHGV-1992297_39	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_40	phrog_9	233.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1992297_40	UniRef90_A0A2A7ALT4	1037.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1992297_40	610130.Closa_0741	627.0	0	Phage Terminase	N/A
Pfam	UHGV-1992297_40	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1992297_40	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1992297_40	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_41	phrog_12	106.2	2.6e-31	portal protein	head and packaging
UniRef90	UHGV-1992297_41	UniRef90_A0A2A7AM75	472.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1992297_41	349161.Dred_2606	265.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1992297_41	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1992297_41	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1992297_41	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1992297_41	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1992297_42	K01358	90.4	2.6e-26	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1992297_42	phrog_94	136.0	4.1e-40	head maturation protease	head and packaging
UniRef90	UHGV-1992297_42	UniRef90_UPI00156EEE56	155.0	1.63952e-43	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1992297_42	1232452.BAIB02000007_gene1626	150.0	3.09967e-42	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1992297_42	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1992297_42	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1992297_42	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_43	phrog_10	154.6	0	major head protein	head and packaging
UniRef90	UHGV-1992297_43	UniRef90_A0A2A7B712	595.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1992297_43	1235792.C808_00086	429.0	0	Phage capsid family	N/A
Pfam	UHGV-1992297_43	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1992297_43	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1992297_43	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1992297_43	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1992297_43	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_44	phrog_749	55.0	0.0000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1992297_44	1211817.CCAT010000053_gene2133	62.0	0.0000000000493	N/A	N/A
PHROG	UHGV-1992297_45	phrog_19734	95.9	3.7e-28	N/A	unknown function
UniRef90	UHGV-1992297_45	UniRef90_A0A0D8I708	81.6	2.51e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-1992297_45	349161.Dred_2602	75.9	7.34e-16	N/A	N/A
structural_annotation	UHGV-1992297_45	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1992297_46	999413.HMPREF1094_02005	66.6	0.000000000000804	N/A	N/A
structural_annotation	UHGV-1992297_46	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_47	phrog_5	47.8	0.00000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-1992297_47	UniRef90_A0A1C6FG30	115.0	9.71e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1992297_47	908340.HMPREF9406_2573	110.0	1.76e-28	N/A	N/A
structural_annotation	UHGV-1992297_47	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_48	phrog_88	96.0	3.9e-28	major tail protein	tail
UniRef90	UHGV-1992297_48	UniRef90_G9YSC5	109.0	1.61e-26	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1992297_48	33035.JPJF01000039_gene278	69.7	0.00000000000545	N/A	N/A
NCBIFam	UHGV-1992297_48	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1992297_48	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_51	phrog_9959	87.1	1.1e-25	tail length tape measure protein	tail
UniRef90	UHGV-1992297_51	UniRef90_A0A2A7ALS3	800.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_51	596328.HMPREF0578_1241	161.0	9.51e-38	phage tail tape measure protein	N/A
Pfam	UHGV-1992297_51	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1992297_51	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1992297_51	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1992297_51	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_52	phrog_33	78.3	1.7e-22	distal tail protein Dit	tail
UniRef90	UHGV-1992297_52	UniRef90_A0A173Z1X4	140.0	1.09e-37	Phage-related protein	N/A
eggNOG-mapper	UHGV-1992297_52	748727.CLJU_c03670	90.5	3.6e-19	tail component	N/A
NCBIFam	UHGV-1992297_52	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1992297_52	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1992297_52	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_53	phrog_1067	168.8	0	minor head protein	head and packaging
UniRef90	UHGV-1992297_53	UniRef90_A0A2A7AM44	701.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_53	1123263.AUKY01000068_gene489	191.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1992297_53	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1992297_53	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1992297_53	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1992297_53	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-1992297_55	K01126	58.3	1e-16	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	N/A
Pfam	UHGV-1992297_55	PF03009	N/A	N/A	Glycerophosphoryl diester phosphodiesterase family	GDPD
COG	UHGV-1992297_55	COG0584	N/A	N/A	Glycerophosphoryl diester phosphodiesterase	N/A
KOfam	UHGV-1992297_56	K07273	164.4	0	acm; lysozyme	N/A
PHROG	UHGV-1992297_56	phrog_291	126.6	2.5e-37	endolysin	lysis
UniRef90	UHGV-1992297_56	UniRef90_UPI001D0EE7D8	304.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1992297_56	748224.HMPREF9436_00154	273.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1992297_56	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1992297_56	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1992297_56	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_57	phrog_1863	76.9	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1992297_57	718252.FP2_04900	147.0	2.8026e-45	N/A	N/A
PHROG	UHGV-1992297_58	phrog_15303	83.5	1.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-1992297_60	1160721.RBI_I00206	58.5	0.0000000000724	N/A	N/A
Pfam	UHGV-1992297_60	PF09274	N/A	N/A	ParG	ParG
structural_annotation	UHGV-1992297_60	PF10723	N/A	N/A	N/A	N/A
KOfam	UHGV-1992297_61	K22300	64.9	4e-22	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1992297_61	phrog_8	60.6	5.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1992297_61	UniRef90_A0A386H238	63.2	0.00000000246	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1992297_61	1226325.HMPREF1548_06481	58.9	0.000000109	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1992297_61	retron_type_VI_hth_cluster2_1	45.7	0.00000000000011	N/A	Retron
Pfam	UHGV-1992297_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1992297_61	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-1992297_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1992297_61	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1992297_65	phrog_16490	104.5	1.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-1992297_65	1408437.JNJN01000043_gene803	154.0	5.1848e-43	N/A	N/A
eggNOG-mapper	UHGV-1992297_66	1408437.JNJN01000043_gene802	121.0	4.52e-34	N/A	N/A
eggNOG-mapper	UHGV-1992297_67	1408437.JNJN01000043_gene801	98.6	8.21e-23	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1992297	Yes	41,888	51	100	1