vOTU vOTU-063989

vOTU: vOTU-063989

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063989
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-15996 → vSUBGEN-28372 → vOTU-063989
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-1342003
Biosample ID	SAMN00792066
Genome length (bp)	32,482 bps
CheckV completeness	92.32% (High-quality)
CDS count	46
CDS density	91.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1662	Host agreement	88.51
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1342003_1	K01447	58.9	1.1e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1342003_1	phrog_20388	309.6	0	endolysin	lysis
UniRef90	UHGV-1342003_1	UniRef90_A0A374N1L8	550.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1342003_1	1203606.HMPREF1526_00253	320.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1342003_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1342003_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1342003_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1342003_1	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_2	phrog_881	79.9	1.8e-23	holin	lysis
UniRef90	UHGV-1342003_2	UniRef90_R7EEV6	101.0	7.71e-27	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1342003_2	742740.HMPREF9474_02251	103.0	1.27e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-1342003_2	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1342003_2	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_3	phrog_1009	40.0	0.000000000059	N/A	unknown function
UniRef90	UHGV-1342003_3	UniRef90_A0A373XMY3	175.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-1342003_3	742765.HMPREF9457_03364	84.7	2.33e-20	N/A	N/A
PHROG	UHGV-1342003_5	phrog_5302	279.6	0	tail protein	tail
UniRef90	UHGV-1342003_5	UniRef90_A0A373XLZ6	1032.0	0	N/A	N/A
eggNOG-mapper	UHGV-1342003_5	742740.HMPREF9474_02337	312.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1342003_5	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1342003_5	PF10651,NF040788	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_6	phrog_1067	99.3	8.1e-30	minor head protein	head and packaging
UniRef90	UHGV-1342003_6	UniRef90_A0A1G5CPD2	150.0	7.52e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1342003_6	1462527.CCDM010000003_gene3730	57.0	0.00000774	gp58-like protein	N/A
NCBIFam	UHGV-1342003_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1342003_6	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1342003_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_7	phrog_33	83.4	4.4e-24	distal tail protein Dit	tail
UniRef90	UHGV-1342003_7	UniRef90_A0A1G5CPA2	137.0	1.1e-35	Phage-related protein	N/A
eggNOG-mapper	UHGV-1342003_7	1160721.RBI_I01575	92.8	9.46e-20	Phage tail protein	N/A
COG	UHGV-1342003_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1342003_7	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1342003_8	K20283	82.2	1.2e-24	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1342003_8	phrog_1272	275.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1342003_8	UniRef90_A0A412ULX0	1657.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1342003_8	588581.Cpap_1264	255.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1342003_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1342003_8	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1342003_8	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1342003_10	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_11	phrog_88	72.1	8e-21	major tail protein	tail
UniRef90	UHGV-1342003_11	UniRef90_A0A1G5CNS8	147.0	4.63998e-41	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1342003_11	1235790.C805_01798	61.6	0.00000000597	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1342003_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1342003_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1342003_12	UniRef90_UPI000E5564A4	260.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1342003_12	1235792.C808_00089	51.6	0.00000222	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-1342003_12	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1342003_13	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_14	phrog_19734	73.3	2.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1342003_14	86416.Clopa_0343	61.6	0.000000000113	N/A	N/A
NCBIFam	UHGV-1342003_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1342003_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_15	phrog_749	56.0	6.1e-16	N/A	unknown function
UniRef90	UHGV-1342003_15	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1342003_15	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-1342003_16	phrog_10	128.6	5.7e-38	major head protein	head and packaging
UniRef90	UHGV-1342003_16	UniRef90_A0A412ULW9	734.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1342003_16	1211817.CCAT010000053_gene2132	325.0	0	Phage capsid family	N/A
Pfam	UHGV-1342003_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1342003_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1342003_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1342003_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1342003_17	K01358	139.0	4.69996e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1342003_17	phrog_94	210.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1342003_17	UniRef90_A0A412ULU1	452.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1342003_17	86416.Clopa_0340	179.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1342003_17	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1342003_17	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1342003_17	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_18	phrog_12	95.1	5.7e-28	portal protein	head and packaging
UniRef90	UHGV-1342003_18	UniRef90_A0A412ULV9	759.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1342003_18	1415774.U728_1254	259.0	0	Phage portal protein	N/A
Pfam	UHGV-1342003_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1342003_18	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1342003_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1342003_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_19	phrog_9	302.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1342003_19	UniRef90_A0A412UM03	1036.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1342003_19	86416.Clopa_0337	636.0	0	Phage Terminase	N/A
Pfam	UHGV-1342003_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1342003_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1342003_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1342003_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_20	phrog_5110	81.8	5.6e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1342003_20	UniRef90_A0A1M5U1D5	113.0	1.7e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1342003_20	1211817.CCAT010000053_gene2128	101.0	1.1e-26	N/A	N/A
Pfam	UHGV-1342003_20	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1342003_20	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_21	phrog_119	66.8	3.2e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342003_21	UniRef90_A0A412ULY9	207.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1342003_21	1158607.UAU_01026	99.4	1.18e-25	HNH endonuclease	N/A
Pfam	UHGV-1342003_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1342003_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1342003_22	phrog_31049	40.6	0.0000000000003	N/A	unknown function
eggNOG-mapper	UHGV-1342003_22	431943.CKL_4074	52.0	0.00000166	N/A	N/A
structural_annotation	UHGV-1342003_22	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_23	phrog_3584	143.2	1.80067e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1342003_23	1235800.C819_00515	67.0	0.000000000231	N/A	N/A
structural_annotation	UHGV-1342003_23	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-1342003_27	UniRef90_UPI000E4DC4DA	138.0	3.03e-39	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1342003_27	PF15597	N/A	N/A	N/A	N/A
KOfam	UHGV-1342003_28	K22300	62.4	1.1e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1342003_28	phrog_8	65.8	1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1342003_28	UniRef90_A0A374N9T4	83.2	1.19e-19	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1342003_28	1292035.H476_0281	69.3	0.000000000000447	Peptidase S24-like	N/A
PADLOC	UHGV-1342003_28	retron_type_VI_hth_cluster2_1	47.6	0.00000000000043	N/A	Retron
Pfam	UHGV-1342003_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1342003_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1342003_28	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_30	phrog_824	146.6	6.72623e-44	N/A	unknown function
UniRef90	UHGV-1342003_30	UniRef90_A0A3D3D6C6	241.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1342003_30	397288.C806_00096	158.0	0	VRR_NUC	N/A
Pfam	UHGV-1342003_30	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1342003_30	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_31	phrog_24518	92.1	5.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-1342003_31	1519439.JPJG01000077_gene922	107.0	2.51e-26	N/A	N/A
structural_annotation	UHGV-1342003_33	PF19678,TIGR02610	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_35	phrog_6058	41.6	0.000000000013	N/A	unknown function
structural_annotation	UHGV-1342003_35	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_36	phrog_8684	95.2	2.6e-28	N/A	unknown function
UniRef90	UHGV-1342003_36	UniRef90_UPI000E48855B	218.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1342003_36	1458852.A0A059T7V5_9CAUD	75.5	0.00000000000000147	YopX protein	N/A
Pfam	UHGV-1342003_36	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1342003_36	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1342003_37	K03497	158.2	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1342003_37	phrog_6218	246.7	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342003_37	UniRef90_UPI000E47CAB6	714.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-1342003_37	394503.Ccel_3306	256.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-1342003_37	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1342003_37	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1342003_37	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-1342003_37	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_39	phrog_6058	41.6	0.000000000013	N/A	unknown function
structural_annotation	UHGV-1342003_39	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1342003_40	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
UniRef90	UHGV-1342003_42	UniRef90_UPI000E51362F	132.0	4.37e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1342003_42	411461.DORFOR_00030	50.8	0.000000123	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1342003_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1342003_42	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_43	phrog_8	45.1	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-1342003_43	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1342003_43	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-1342003_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1342003_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1342003_43	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_44	phrog_1914	145.0	4.49817e-43	N/A	unknown function
UniRef90	UHGV-1342003_44	UniRef90_UPI000E543E50	345.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1342003_44	1160721.RBI_I01604	172.0	0	N/A	N/A
Pfam	UHGV-1342003_44	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1342003_44	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1342003_44	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1342003_45	phrog_4980	114.4	2.8e-35	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1342003_45	UniRef90_UPI000E52DA24	355.0	0	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1342003_45	658086.HMPREF0994_06731	95.1	6.35e-19	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1342003_45	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1342003_45	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1342003_45	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-1342003_46	K14059	96.8	3.3e-28	int; integrase	N/A
PHROG	UHGV-1342003_46	phrog_1	120.6	1.7e-35	integrase	integration and excision
UniRef90	UHGV-1342003_46	UniRef90_A0A1G5CL52	796.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1342003_46	693746.OBV_41260	187.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1342003_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1342003_46	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1342003_46	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1342003	Yes	32,482	40	92	1
UHGV-1485273	No	25,376	40	72	1
UHGV-1462250	No	22,447	40	64	1
UHGV-0194697	No	22,427	40	64	1