vOTU vOTU-063996

vOTU: vOTU-063996

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-063996
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00172 → vSUBGEN-09343 → vOTU-063996
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1531778
Biosample ID	SAMN02674707
Genome length (bp)	34,570 bps
CheckV completeness	90.48% (High-quality)
CDS count	46
CDS density	92.99%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	1265	Host agreement	81.58
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	325	Host agreement	86.77

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1531778_1	K14059	225.4	0	int; integrase	N/A
PHROG	UHGV-1531778_1	phrog_1	207.2	0	integrase	integration and excision
UniRef90	UHGV-1531778_1	UniRef90_R6AKI6	817.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1531778_1	536233.CLO_0855	393.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1531778_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1531778_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1531778_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1531778_1	PF00589,PF12286,PF14659,MF_01808,NF002331,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_2	phrog_2695	353.6	0	N/A	unknown function
UniRef90	UHGV-1531778_2	UniRef90_A0A174PBX4	671.0	0	SIR2_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1531778_2	1504823.CCMM01000008_gene1082	443.0	0	NAD+ binding	N/A
PADLOC	UHGV-1531778_2	Sirtuin_Blast2	235.9	0	N/A	N/A
Pfam	UHGV-1531778_2	PF13289	N/A	N/A	SIR2-like domain	SIR2_2
COG	UHGV-1531778_2	COG0846	N/A	N/A	NAD-dependent protein deacetylase, SIR2 family	N/A
eggNOG-mapper	UHGV-1531778_3	658655.HMPREF0988_00902	48.1	0.000000442	N/A	N/A
UniRef90	UHGV-1531778_4	UniRef90_UPI0006C337A0	223.0	0	tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-1531778_4	2754.EH55_11435	169.0	8.40779e-45	cell adhesion	N/A
COG	UHGV-1531778_4	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_5	phrog_20886	53.2	0.0000000000000038	N/A	unknown function
UniRef90	UHGV-1531778_5	UniRef90_UPI0013E038FD	53.1	0.000000137	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1531778_5	861450.HMPREF0080_02020	47.8	0.00000413	N/A	N/A
Pfam	UHGV-1531778_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1531778_5	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1531778_6	K22299	64.2	3.1e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1531778_6	phrog_8	75.8	8.2e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1531778_6	UniRef90_A0A413YU20	253.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1531778_6	553973.CLOHYLEM_07297	89.4	2.29e-21	Transcriptional	N/A
PADLOC	UHGV-1531778_6	retron_type_VI_hth_cluster2_1	53.4	0.0000000000000052	N/A	Retron
Pfam	UHGV-1531778_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1531778_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1531778_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531778_7	UniRef90_A0A413YU34	130.0	3.31e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1531778_7	706433.HMPREF9430_01294	80.1	5.16e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1531778_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1531778_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531778_8	UniRef90_A0A356C6A4	154.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-1531778_8	318464.IO99_13850	65.5	0.000000000000379	Helix-turn-helix domain	N/A
Pfam	UHGV-1531778_8	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1531778_8	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1531778_8	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_10	phrog_3584	242.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531778_10	UniRef90_A0A4P8IFK4	342.0	0	N/A	N/A
eggNOG-mapper	UHGV-1531778_10	742741.HMPREF9475_00404	294.0	0	N/A	N/A
structural_annotation	UHGV-1531778_10	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-1531778_11	K03469	67.0	4.1e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1531778_11	phrog_531	63.7	3.5e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531778_11	UniRef90_A0A413YU26	275.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1531778_11	1121447.JONL01000002_gene2134	75.5	0.00000000000000323	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1531778_11	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1531778_11	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1531778_11	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1531778_12	PF19962,NF011863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1531778_13	1280698.AUJS01000007_gene1016	148.0	1.62551e-43	N/A	N/A
PHROG	UHGV-1531778_14	phrog_4433	72.6	3.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1531778_14	742733.HMPREF9469_00220	130.0	1.5e-35	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1531778_14	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1531778_14	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_15	phrog_8470	171.5	0	N/A	unknown function
UniRef90	UHGV-1531778_15	UniRef90_UPI0018999714	654.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1531778_15	742733.HMPREF9469_00219	379.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1531778_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1531778_15	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_16	phrog_15077	91.8	1.4e-26	N/A	unknown function
UniRef90	UHGV-1531778_16	UniRef90_A0A3A6HZA9	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-1531778_16	1280698.AUJS01000007_gene1019	238.0	0	N/A	N/A
structural_annotation	UHGV-1531778_16	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_21	phrog_625	69.3	3.8e-20	N/A	unknown function
UniRef90	UHGV-1531778_21	UniRef90_A0A413YU40	243.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1531778_21	397290.C810_01502	127.0	4.87e-36	N/A	N/A
structural_annotation	UHGV-1531778_21	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_22	phrog_36	66.7	4.4e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1531778_22	UniRef90_UPI0009BB8B35	70.9	0.000000000000886	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1531778_22	397290.C810_01391	105.0	4.12e-27	N/A	N/A
structural_annotation	UHGV-1531778_22	PF02996	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1531778_23	595460.RRSWK_03491	149.0	1.59e-39	N/A	N/A
KOfam	UHGV-1531778_25	K07474	152.7	2.8026e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1531778_25	phrog_51	161.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-1531778_25	UniRef90_A0A413YU49	365.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1531778_25	1499683.CCFF01000014_gene3916	149.0	4.9606e-43	Terminase small subunit	N/A
Pfam	UHGV-1531778_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1531778_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1531778_25	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1531778_26	K06909	95.2	8.3e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1531778_26	phrog_2	69.6	6.6e-20	terminase large subunit	head and packaging
UniRef90	UHGV-1531778_26	UniRef90_A0A413YU24	957.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1531778_26	1391647.AVSV01000003_gene1802	516.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1531778_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1531778_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1531778_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_27	phrog_533	285.7	0	portal protein	head and packaging
UniRef90	UHGV-1531778_27	UniRef90_A0A413YU90	939.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1531778_27	33035.JPJF01000093_gene2257	547.0	0	N/A	N/A
structural_annotation	UHGV-1531778_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_28	phrog_581	243.4	0	minor head protein	head and packaging
UniRef90	UHGV-1531778_28	UniRef90_A0A413YU28	649.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1531778_28	33035.JPJF01000093_gene2255	439.0	0	N/A	N/A
Pfam	UHGV-1531778_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1531778_28	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1531778_28	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_31	phrog_872	168.7	0	N/A	unknown function
UniRef90	UHGV-1531778_31	UniRef90_A0A413P9Z7	217.0	0	N/A	N/A
eggNOG-mapper	UHGV-1531778_31	573413.Spirs_2170	178.0	0	N/A	N/A
Pfam	UHGV-1531778_31	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1531778_31	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1531778_31	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_32	phrog_2303	138.6	4.30002e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1531778_32	483218.BACPEC_01156	139.0	4.75e-38	N/A	N/A
PHROG	UHGV-1531778_33	phrog_422	212.8	0	major head protein	head and packaging
UniRef90	UHGV-1531778_33	UniRef90_W0U896	210.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1531778_33	1121947.AUHK01000002_gene935	216.0	0	N/A	N/A
structural_annotation	UHGV-1531778_33	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_35	phrog_541	65.5	8.3e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-1531778_35	1304866.K413DRAFT_0783	145.0	1.58347e-43	N/A	N/A
PHROG	UHGV-1531778_36	phrog_8710	126.3	1.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-1531778_36	742740.HMPREF9474_03508	125.0	1e-35	N/A	N/A
structural_annotation	UHGV-1531778_36	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_37	phrog_556	59.9	3.9e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-1531778_37	483218.BACPEC_01151	140.0	3.66005e-41	N/A	N/A
PHROG	UHGV-1531778_38	phrog_2595	79.3	4.2e-23	head-tail connector protein	connector
UniRef90	UHGV-1531778_38	UniRef90_UPI001D068DAC	137.0	8.45e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-1531778_38	742740.HMPREF9474_03510	125.0	7.13e-35	N/A	N/A
Pfam	UHGV-1531778_38	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1531778_38	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_39	phrog_820	117.7	7.1e-35	major tail protein	tail
UniRef90	UHGV-1531778_39	UniRef90_T3DDR1	171.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-1531778_39	1151292.QEW_2426	171.0	0	N/A	N/A
structural_annotation	UHGV-1531778_39	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_40	phrog_8300	67.4	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-1531778_40	1151292.QEW_2425	60.8	0.000000000154	N/A	N/A
structural_annotation	UHGV-1531778_40	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_41	phrog_8355	88.1	4.8e-26	N/A	unknown function
UniRef90	UHGV-1531778_41	UniRef90_UPI0006BBA9AA	110.0	1.75e-29	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1531778_41	1151292.QEW_2424	105.0	5.07e-29	N/A	N/A
PHROG	UHGV-1531778_42	phrog_1535	280.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1531778_42	UniRef90_A0A1C5PIN9	492.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1531778_42	33035.JPJF01000093_gene2243	352.0	0	phage tail tape measure protein	N/A
COG	UHGV-1531778_42	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1531778_42	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_43	phrog_1194	82.4	4.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-1531778_43	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-1531778_43	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_44	phrog_1401	66.5	3.9e-19	N/A	unknown function
UniRef90	UHGV-1531778_44	UniRef90_UPI00129D2DCF	66.6	0.0000000000196	N/A	N/A
eggNOG-mapper	UHGV-1531778_44	1294142.CINTURNW_1705	60.8	0.000000000553	N/A	N/A
structural_annotation	UHGV-1531778_44	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_45	phrog_6616	160.2	0	tail protein	tail
UniRef90	UHGV-1531778_45	UniRef90_A0A8D9PGP3	746.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1531778_45	1499683.CCFF01000014_gene3896	270.0	0	Phage minor structural protein	N/A
COG	UHGV-1531778_45	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1531778_45	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1531778_46	phrog_2566	45.8	0.00000000000095	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1531778	Yes	34,570	37	90	1
UHGV-1569856	No	11,861	37	32	1