vOTU vOTU-064390

vOTU: vOTU-064390

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-064390
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp900545925
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00020 → vGENUS-19946 → vSUBGEN-38932 → vOTU-064390
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1859368
Biosample ID	SAMN18819177
Genome length (bp)	39,290 bps
CheckV completeness	95.38% (High-quality)
CDS count	76
CDS density	93.21%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	591	Host agreement	78.68
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp900545925	Total connections	7	Host agreement	71.43

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1859368_1	phrog_35892	80.3	1.1e-23	N/A	unknown function
UniRef90	UHGV-1859368_1	UniRef90_A0A843FMD8	185.0	0	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-1859368_1	471875.RUMLAC_02240	154.0	1.94e-40	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-1859368_1	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-1859368_1	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1859368_1	PF14870,MF_01282,NF000022,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_3	phrog_10898	40.2	0.000000000057	N/A	unknown function
structural_annotation	UHGV-1859368_3	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_4	phrog_10898	282.9	0	N/A	unknown function
UniRef90	UHGV-1859368_4	UniRef90_A0A7U3NJT3	192.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1859368_4	717606.PaecuDRAFT_2136	73.9	0.00000000000221	S-layer homology domain	N/A
COG	UHGV-1859368_4	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-1859368_4	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1859368_7	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_8	phrog_64	155.1	0	portal protein	head and packaging
UniRef90	UHGV-1859368_8	UniRef90_UPI001AA0B7FF	497.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1859368_8	673376.F2VHW1_9CAUD	221.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1859368_8	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1859368_8	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1859368_9	K06909	133.5	2.2e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1859368_9	phrog_10250	158.8	0	N/A	unknown function
UniRef90	UHGV-1859368_9	UniRef90_UPI0018A99FCF	620.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1859368_9	476272.RUMHYD_01756	450.0	0	N/A	N/A
Pfam	UHGV-1859368_9	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1859368_9	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1859368_9	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1859368_9	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1859368_9	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1859368_10	K07474	104.9	1.5e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1859368_10	phrog_51	113.0	2.4e-33	terminase small subunit	head and packaging
UniRef90	UHGV-1859368_10	UniRef90_A0A396NMY4	130.0	1.4e-36	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1859368_10	476272.RUMHYD_01754	126.0	1.51e-35	Terminase small subunit	N/A
Pfam	UHGV-1859368_10	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1859368_10	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1859368_10	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1859368_11	PF10922,MF_00839	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1859368_12	742738.HMPREF9460_02503	90.9	1.37e-22	N/A	N/A
structural_annotation	UHGV-1859368_12	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_14	phrog_1770	59.7	6.3e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1859368_14	32057.KB217481_gene8515	128.0	1.8e-35	N/A	N/A
structural_annotation	UHGV-1859368_14	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
UniRef90	UHGV-1859368_17	UniRef90_A0A8D9PDK2	54.7	0.000000155	Zinc-ribbon containing domain	N/A
PHROG	UHGV-1859368_21	phrog_599	48.2	0.00000000000026	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1859368_21	UniRef90_A0A412AV49	108.0	2.34e-29	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-1859368_21	1235790.C805_00069	62.8	0.00000000000473	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1859368_21	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1859368_21	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1859368_21	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1859368_21	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_22	phrog_38832	40.2	0.00000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1859368_22	665956.HMPREF1032_03087	51.2	0.00000455	N/A	N/A
PHROG	UHGV-1859368_23	phrog_38832	70.8	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1859368_23	665956.HMPREF1032_03087	124.0	1.21e-34	N/A	N/A
PHROG	UHGV-1859368_24	phrog_3136	141.7	2.20004e-42	N/A	unknown function
UniRef90	UHGV-1859368_24	UniRef90_UPI001C26B029	157.0	4.2039e-45	ASCH domain-containing protein	N/A
COG	UHGV-1859368_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1859368_24	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-1859368_26	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1859368_26	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_28	phrog_16304	56.9	4.4e-16	N/A	unknown function
UniRef90	UHGV-1859368_28	UniRef90_A0A3D3Y5P0	225.0	0	N/A	N/A
Pfam	UHGV-1859368_28	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1859368_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1859368_28	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_29	phrog_378	98.7	7.3e-29	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1859368_29	UniRef90_UPI001E43F9BA	71.2	0.00000000000111	N/A	N/A
eggNOG-mapper	UHGV-1859368_29	1423732.BALS01000134_gene393	65.5	0.0000000000437	N/A	N/A
structural_annotation	UHGV-1859368_29	PF05037,NF004948	N/A	N/A	N/A	N/A
UniRef90	UHGV-1859368_30	UniRef90_A0A2Z4QA33	241.0	0	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-1859368_30	718252.FP2_01050	129.0	1.08e-34	N/A	N/A
structural_annotation	UHGV-1859368_30	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_31	phrog_124	114.6	8.6e-34	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1859368_31	UniRef90_A0A2Z4QBI4	395.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-1859368_31	445972.ANACOL_00146	229.0	0	AAA domain	N/A
Pfam	UHGV-1859368_31	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1859368_31	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-1859368_31	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1859368_35	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1859368_36	TIGR01898,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_37	phrog_15946	60.8	3.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-1859368_37	1041147.AUFB01000014_gene330	68.6	0.00000000000186	N/A	N/A
UniRef90	UHGV-1859368_38	UniRef90_UPI000F0633F9	63.5	0.00000000000653	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1859368_38	1235835.C814_03153	76.3	1.23e-17	N/A	N/A
structural_annotation	UHGV-1859368_38	PF09035,NF040990	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1859368_39	405948.SACE_5483	50.1	0.00000403	domain, Protein	N/A
Pfam	UHGV-1859368_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1859368_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1859368_39	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1859368_40	1216932.CM240_0696	73.6	0.000000000000439	N/A	N/A
structural_annotation	UHGV-1859368_40	PF03965,MF_01819,NF012168,COG3682	N/A	N/A	N/A	N/A
UniRef90	UHGV-1859368_41	UniRef90_A0A3D3Y0G5	138.0	2.49e-39	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1859368_41	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1859368_45	UniRef90_A0A542AKK8	66.6	0.00000000182	Adhesin_P1_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1859368_45	1298920.KI911353_gene413	141.0	3.11e-39	N/A	N/A
Pfam	UHGV-1859368_45	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-1859368_45	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
UniRef90	UHGV-1859368_47	UniRef90_A0A8D9UHA6	87.4	4.59e-18	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1859368_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1859368_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1859368_47	PF12844	N/A	N/A	N/A	N/A
KOfam	UHGV-1859368_48	K14059	131.8	9.4e-39	int; integrase	N/A
PHROG	UHGV-1859368_48	phrog_1	143.6	1.80067e-42	integrase	integration and excision
UniRef90	UHGV-1859368_48	UniRef90_UPI00195CC1EE	380.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1859368_48	1235835.C814_03141	194.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1859368_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1859368_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1859368_48	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1859368_49	1226322.HMPREF1545_00079	113.0	4.21e-31	N/A	N/A
structural_annotation	UHGV-1859368_50	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_51	phrog_20016	197.5	0	N/A	unknown function
UniRef90	UHGV-1859368_51	UniRef90_A0A285PT46	190.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1859368_51	1226322.HMPREF1545_00077	171.0	0	N/A	N/A
structural_annotation	UHGV-1859368_51	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_52	phrog_16490	134.9	1.49939e-42	N/A	unknown function
eggNOG-mapper	UHGV-1859368_52	1408437.JNJN01000043_gene803	157.0	8.40779e-45	N/A	N/A
PHROG	UHGV-1859368_53	phrog_22984	73.5	2.6e-21	N/A	unknown function
PHROG	UHGV-1859368_54	phrog_21718	108.3	6.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-1859368_54	397290.C810_05210	69.7	0.000000000000789	N/A	N/A
PHROG	UHGV-1859368_55	phrog_3754	106.4	2.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-1859368_55	1226322.HMPREF1545_00073	168.0	0	N/A	N/A
eggNOG-mapper	UHGV-1859368_56	1160721.RBI_I00206	56.2	0.00000000057	N/A	N/A
structural_annotation	UHGV-1859368_56	PF10723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1859368_58	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_59	phrog_14030	140.4	1.19993e-41	N/A	unknown function
UniRef90	UHGV-1859368_59	UniRef90_R6LL81	244.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1859368_59	1121866.AUGK01000003_gene1444	96.3	4.22e-20	amidase activity	N/A
COG	UHGV-1859368_59	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1859368_60	phrog_6918	95.6	3.5e-28	holin	lysis
UniRef90	UHGV-1859368_60	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-1859368_60	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1859368_60	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1859368_60	PF09682,TIGR01673	N/A	N/A	N/A	N/A
Pfam	UHGV-1859368_63	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1859368_63	PF07484	N/A	N/A	N/A	N/A
Pfam	UHGV-1859368_64	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1859368_64	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_65	phrog_18725	101.4	8.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-1859368_65	693746.OBV_18220	130.0	2.52e-36	N/A	N/A
PHROG	UHGV-1859368_66	phrog_13879	194.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1859368_66	1122919.KB905559_gene1344	166.0	1.17989e-42	N/A	N/A
structural_annotation	UHGV-1859368_66	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1859368_67	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_68	phrog_6900	239.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1859368_68	1123312.KB904569_gene357	309.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1859368_68	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1859368_68	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_70	phrog_18646	54.5	0.0000000000000024	N/A	unknown function
PHROG	UHGV-1859368_71	phrog_885	75.2	7.8e-22	major tail protein	tail
UniRef90	UHGV-1859368_71	UniRef90_A0A843J9F0	209.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1859368_71	1504822.CCNO01000012_gene492	246.0	0	N/A	N/A
structural_annotation	UHGV-1859368_71	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1859368_72	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_73	phrog_17977	79.1	4.3e-23	N/A	unknown function
UniRef90	UHGV-1859368_73	UniRef90_UPI00141211AB	114.0	9.97e-31	head-tail adaptor protein	N/A
structural_annotation	UHGV-1859368_73	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1859368_75	phrog_544	131.5	8.2e-39	major head protein	head and packaging
UniRef90	UHGV-1859368_75	UniRef90_A0A1C6B5R0	593.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1859368_75	1232453.BAIF02000011_gene3359	363.0	0	N/A	N/A
Pfam	UHGV-1859368_75	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1859368_75	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1859368_76	UniRef90_A0A6B9SU02	122.0	6.16e-32	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-1859368_76	476272.RUMHYD_01775	59.7	0.0000000097	COG NOG36366 non supervised orthologous group	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1859368	Yes	39,290	53	95	1