vOTU vOTU-064448

vOTU: vOTU-064448

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-064448
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Acetatifactor → Acetatifactor sp900554205
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00449 → vGENUS-05482 → vSUBGEN-14121 → vOTU-064448
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Acetatifactor
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0006727
Biosample ID	N/A
Genome length (bp)	39,992 bps
CheckV completeness	98.20% (High-quality)
CDS count	65
CDS density	93.38%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Acetatifactor	Total connections	401	Host agreement	87.53
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Acetatifactor → Acetatifactor sp900554205	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0006727_1	K06400	237.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0006727_1	phrog_95	242.3	0	integrase	integration and excision
UniRef90	UHGV-0006727_1	UniRef90_A0A1Q6KI87	310.0	0	Resolvase/invertase-type recombinase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_1	411470.RUMGNA_02175	181.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0006727_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0006727_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0006727_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0006727_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0006727_1	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_2	phrog_8545	57.7	1.9e-16	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0006727_2	UniRef90_UPI001C0EAFDF	141.0	2.22e-39	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0006727_2	1304866.K413DRAFT_0836	141.0	7.05e-40	tRNA_anti-like	N/A
Pfam	UHGV-0006727_2	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0006727_2	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-0006727_3	K22300	43.8	0.0000000000046	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0006727_3	phrog_8	55.3	0.0000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0006727_3	UniRef90_A0A317UDF6	100.0	3.48e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_3	1536772.R70723_06535	76.3	2.57e-16	addiction module antidote protein HigA	N/A
Pfam	UHGV-0006727_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0006727_3	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0006727_3	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006727_4	UniRef90_K4ZGH7	60.8	0.000000000143	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_4	411460.RUMTOR_02057	53.9	0.00000000861	Cro/C1-type HTH DNA-binding domain	N/A
PHROG	UHGV-0006727_8	phrog_1499	304.0	0	N/A	unknown function
UniRef90	UHGV-0006727_8	UniRef90_A0A316M6R3	722.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_8	742733.HMPREF9469_01850	593.0	0	DNA recombination	N/A
Pfam	UHGV-0006727_8	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0006727_8	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0006727_8	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_9	phrog_3657	333.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0006727_9	1304866.K413DRAFT_3015	357.0	0	N/A	N/A
PHROG	UHGV-0006727_10	phrog_1227	256.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006727_10	UniRef90_A0A316M6N2	509.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006727_10	742733.HMPREF9469_01848	355.0	0	N/A	N/A
Pfam	UHGV-0006727_10	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0006727_10	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0006727_10	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_11	phrog_7566	56.4	4.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0006727_11	1304866.K413DRAFT_3017	63.2	0.0000000000143	N/A	N/A
PHROG	UHGV-0006727_12	phrog_1682	55.8	7.6e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006727_12	UniRef90_A0A0F0CCS0	166.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0006727_12	742733.HMPREF9469_01846	152.0	1.4013e-45	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0006727_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0006727_12	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_14	phrog_15768	103.6	2.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0006727_14	886379.AEWI01000001_gene1766	159.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0006727_14	PF09681,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_15	phrog_478	118.4	2.9e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0006727_15	UniRef90_A0A373Q857	179.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_15	478749.BRYFOR_08526	99.0	6.95e-25	N/A	N/A
KOfam	UHGV-0006727_21	K00571	95.5	5e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0006727_21	phrog_16	228.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006727_21	UniRef90_A0A316MA86	1541.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0006727_21	1298920.KI911353_gene2709	1361.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0006727_21	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0006727_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0006727_21	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0006727_21	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_26	phrog_15198	44.6	0.0000000000017	N/A	unknown function
UniRef90	UHGV-0006727_26	UniRef90_A0A6L6XDH6	122.0	6.69e-33	N/A	N/A
Pfam	UHGV-0006727_26	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0006727_28	phrog_8684	123.1	3.4e-37	N/A	unknown function
UniRef90	UHGV-0006727_28	UniRef90_A0A3D2KEV6	162.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_28	742733.HMPREF9469_00912	87.0	3.83e-20	YopX protein	N/A
Pfam	UHGV-0006727_28	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0006727_28	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0006727_28	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_29	phrog_599	40.9	0.000000000043	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0006727_29	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0006727_29	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0006727_30	phrog_20593	52.0	0.000000000000012	N/A	unknown function
PHROG	UHGV-0006727_33	phrog_874	188.3	0	N/A	unknown function
UniRef90	UHGV-0006727_33	UniRef90_A0A6N7W7Q7	234.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_33	411468.CLOSCI_00298	242.0	0	N/A	N/A
structural_annotation	UHGV-0006727_33	PF04266,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006727_35	UniRef90_UPI00129DE9D4	54.3	0.0000000184	Arc family DNA-binding protein	N/A
structural_annotation	UHGV-0006727_35	PF03869,NF008671,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0006727_37	K03497	52.8	0.0000000000000075	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0006727_37	phrog_940	347.1	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006727_37	UniRef90_UPI00190E9E57	422.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006727_37	1232449.BAHV02000018_gene1534	374.0	0	N/A	N/A
PADLOC	UHGV-0006727_37	MTase_II_00015	95.7	6.9e-28	Type II methyltransferase	RM
Pfam	UHGV-0006727_37	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0006727_37	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0006727_37	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0006727_37	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_38	phrog_2579	53.2	0.0000000000000043	ParB C-terminal domain	DNA, RNA and nucleotide metabolism
KOfam	UHGV-0006727_40	K06909	416.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0006727_40	phrog_3717	187.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0006727_40	UniRef90_A0A1C7I418	592.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0006727_40	33035.JPJF01000106_gene3136	588.0	0	Terminase small subunit	N/A
Pfam	UHGV-0006727_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0006727_40	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0006727_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0006727_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0006727_40	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_41	phrog_533	292.0	0	portal protein	head and packaging
UniRef90	UHGV-0006727_41	UniRef90_A0A1C5MB20	534.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0006727_41	33035.JPJF01000106_gene3135	466.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0006727_41	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_42	phrog_556	61.2	1.2e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0006727_42	1235790.C805_00048	98.6	1.26e-23	N/A	N/A
Pfam	UHGV-0006727_42	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0006727_42	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_43	phrog_581	219.1	0	minor head protein	head and packaging
UniRef90	UHGV-0006727_43	UniRef90_A0A3D4T830	149.0	4.05e-36	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0006727_43	1235790.C805_00050	236.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0006727_43	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0006727_43	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006727_43	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_44	phrog_3754	97.4	4.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0006727_44	476272.RUMHYD_01764	134.0	6.41e-39	N/A	N/A
UniRef90	UHGV-0006727_45	UniRef90_A0A395X7A4	104.0	3.96e-27	CTP synthase	N/A
eggNOG-mapper	UHGV-0006727_45	476272.RUMHYD_01766	98.2	1.75e-25	N/A	N/A
PHROG	UHGV-0006727_46	phrog_21718	96.3	2.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0006727_46	397290.C810_05210	94.7	1.64e-22	N/A	N/A
PHROG	UHGV-0006727_47	phrog_22984	77.4	1.5e-22	N/A	unknown function
PHROG	UHGV-0006727_48	phrog_16490	98.1	5.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0006727_48	476272.RUMHYD_01770	140.0	2e-38	N/A	N/A
PHROG	UHGV-0006727_50	phrog_28802	94.7	4.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-0006727_50	476272.RUMHYD_01772	97.8	1.33e-23	N/A	N/A
PHROG	UHGV-0006727_51	phrog_194	82.2	7.6e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0006727_51	UniRef90_UPI001D14C9C8	133.0	1.15e-35	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0006727_51	411460.RUMTOR_02088	101.0	2.7e-24	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0006727_51	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0006727_51	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_52	phrog_544	147.4	8.54792e-44	major head protein	head and packaging
UniRef90	UHGV-0006727_52	UniRef90_A0A810PZM2	318.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_52	1347392.CCEZ01000005_gene1236	216.0	0	N/A	N/A
structural_annotation	UHGV-0006727_52	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_53	phrog_541	87.7	9.4e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0006727_53	397290.C810_05226	107.0	2e-27	N/A	N/A
PHROG	UHGV-0006727_54	phrog_1129	67.5	1.3e-19	holin	lysis
UniRef90	UHGV-0006727_54	UniRef90_A0A416MDZ9	135.0	1.11e-39	Enolase	N/A
eggNOG-mapper	UHGV-0006727_54	742740.HMPREF9474_03522	125.0	1.11e-36	N/A	N/A
Pfam	UHGV-0006727_54	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0006727_54	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_55	phrog_3366	98.3	6.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0006727_55	476272.RUMHYD_01779	140.0	1.23999e-40	N/A	N/A
structural_annotation	UHGV-0006727_55	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_56	phrog_3266	74.9	8.4e-22	tail completion	connector
eggNOG-mapper	UHGV-0006727_56	476272.RUMHYD_01781	169.0	0	N/A	N/A
structural_annotation	UHGV-0006727_56	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_57	phrog_3099	130.2	1.3e-38	N/A	unknown function
UniRef90	UHGV-0006727_57	UniRef90_A0A7M3SAI1	110.0	1.12e-26	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0006727_57	1304866.K413DRAFT_3043	110.0	1.68e-28	N/A	N/A
structural_annotation	UHGV-0006727_57	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_58	phrog_11299	117.3	1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0006727_58	411459.RUMOBE_01382	100.0	3.85e-25	N/A	N/A
structural_annotation	UHGV-0006727_58	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_59	phrog_706	117.6	8.1e-35	N/A	unknown function
UniRef90	UHGV-0006727_59	UniRef90_A0A173TZF2	187.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0006727_59	411459.RUMOBE_01383	176.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0006727_59	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0006727_59	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_60	phrog_1535	141.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0006727_60	UniRef90_A0A1I2KTM2	122.0	4.75e-25	Phage-related protein	N/A
eggNOG-mapper	UHGV-0006727_60	411459.RUMOBE_01384	130.0	1.56e-28	phage tail tape measure protein	N/A
COG	UHGV-0006727_60	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0006727_61	phrog_1194	63.2	3.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0006727_61	483218.BACPEC_01144	99.0	8.16e-25	N/A	N/A
Pfam	UHGV-0006727_61	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0006727_61	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_62	phrog_18190	602.7	0	N/A	unknown function
UniRef90	UHGV-0006727_62	UniRef90_R7BGL9	415.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006727_62	1235790.C805_00089	398.0	0	N/A	N/A
structural_annotation	UHGV-0006727_62	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0006727_64	phrog_17196	123.3	1.3e-36	kinase	other
eggNOG-mapper	UHGV-0006727_64	483218.BACPEC_01141	168.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0006727_64	PF19537,PF13619,COG3536	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0006727	Yes	39,992	45	98	1
UHGV-0005409	No	22,306	44	55	1