vOTU vOTU-064740

vOTU: vOTU-064740

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-064740
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00581 → vGENUS-00476 → vSUBGEN-40183 → vOTU-064740
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1400020
Biosample ID	SAMEA3665078
Genome length (bp)	38,048 bps
CheckV completeness	92.06% (High-quality)
CDS count	43
CDS density	93.74%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	206	Host agreement	95.63
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	40	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1400020_1	PF20622,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_2	phrog_22978	733.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1400020_2	1410650.JHWL01000003_gene2814	479.0	0	N/A	N/A
Pfam	UHGV-1400020_2	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-1400020_3	1410650.JHWL01000003_gene2815	77.8	0.00000000000147	N/A	N/A
PHROG	UHGV-1400020_5	phrog_511	202.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1400020_5	1410650.JHWL01000003_gene2827	274.0	0	N/A	N/A
structural_annotation	UHGV-1400020_5	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_6	phrog_12105	129.9	8e-38	N/A	unknown function
eggNOG-mapper	UHGV-1400020_6	1226322.HMPREF1545_03850	89.0	4.26e-21	N/A	N/A
PHROG	UHGV-1400020_7	phrog_15239	46.6	0.000000000004	N/A	unknown function
PHROG	UHGV-1400020_8	phrog_1357	212.7	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1400020_8	1410650.JHWL01000003_gene2830	270.0	0	N/A	N/A
NCBIFam	UHGV-1400020_8	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1400020_8	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_9	phrog_13908	191.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1400020_9	1410650.JHWL01000003_gene2831	116.0	2.75e-27	N/A	N/A
KOfam	UHGV-1400020_10	K07584	44.2	0.000000000026	N/A	N/A
PHROG	UHGV-1400020_10	phrog_4478	52.8	0.00000000000003	peptidase	other
eggNOG-mapper	UHGV-1400020_10	521098.Aaci_1816	54.7	0.0000000349	Cysteine protease Prp	N/A
Pfam	UHGV-1400020_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1400020_10	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400020_10	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_11	phrog_156	293.2	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1400020_11	1410650.JHWL01000003_gene2833	520.0	0	N/A	N/A
structural_annotation	UHGV-1400020_11	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1400020_12	K06909	120.6	1.2e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1400020_12	phrog_979	120.7	2.9e-36	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-1400020_12	1410650.JHWL01000003_gene2834	563.0	0	N/A	N/A
Pfam	UHGV-1400020_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1400020_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1400020_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_13	phrog_1206	40.9	0.000000000043	terminase small subunit	head and packaging
KOfam	UHGV-1400020_15	K01160	58.7	0.0000000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1400020_15	phrog_1682	80.6	1.8e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400020_15	1235790.C805_00029	117.0	1.12e-32	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1400020_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1400020_15	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_16	phrog_474	116.0	3.9e-33	phosphofructokinase	other
eggNOG-mapper	UHGV-1400020_16	665956.HMPREF1032_00639	115.0	9.56e-32	N/A	N/A
Pfam	UHGV-1400020_16	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1400020_16	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_17	phrog_21498	311.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1400020_17	78346.BRUM_0376	244.0	0	DNA binding	N/A
COG	UHGV-1400020_17	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1400020_17	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_23	phrog_2118	102.2	4.9e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400020_23	742740.HMPREF9474_03129	125.0	9.84e-36	HNH endonuclease	N/A
Pfam	UHGV-1400020_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1400020_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1400020_23	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_24	phrog_38832	47.9	0.0000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1400020_24	665956.HMPREF1032_03087	52.4	0.00000042	N/A	N/A
PHROG	UHGV-1400020_28	phrog_9474	111.8	6.4e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400020_28	644966.Tmar_0029	225.0	0	HNH endonuclease	N/A
Pfam	UHGV-1400020_28	PF14279	N/A	N/A	HNH endonuclease	HNH_5
COG	UHGV-1400020_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1400020_29	K03111	142.5	3.69999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1400020_29	phrog_44	136.9	1.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400020_29	693746.OBV_12860	182.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1400020_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1400020_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1400020_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1400020_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1400020_29	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1400020_30	K07455	289.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1400020_30	phrog_148	281.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400020_30	1226322.HMPREF1545_00015	371.0	0	RecT family	N/A
Pfam	UHGV-1400020_30	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1400020_30	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1400020_30	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1400020_30	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400020_31	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-1400020_32	phrog_434	319.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400020_32	1121344.JHZO01000003_gene985	283.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1400020_32	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1400020_32	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1400020_32	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1400020_32	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1400020_34	K00558	44.1	2.5e-19	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1400020_34	phrog_16528	81.5	7.6e-23	DNA methyltransferase	other
eggNOG-mapper	UHGV-1400020_34	657322.FPR_23140	194.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-1400020_34	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1400020_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1400020_35	K00558	113.5	1.3e-32	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1400020_35	phrog_116	131.5	3.7e-38	DNA methyltransferase	other
eggNOG-mapper	UHGV-1400020_35	755731.Clo1100_3595	312.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1400020_35	oMTase_00004	194.8	0	orphan methyltransferase	RM
Pfam	UHGV-1400020_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1400020_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
eggNOG-mapper	UHGV-1400020_37	1235835.C814_03153	68.2	0.0000000000000247	N/A	N/A
structural_annotation	UHGV-1400020_37	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400020_38	1321782.HMPREF1986_00318	56.6	0.000000000649	N/A	N/A
structural_annotation	UHGV-1400020_38	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1400020_39	K22300	60.8	2.3e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1400020_39	phrog_8	55.0	0.000000000000017	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1400020_39	1226322.HMPREF1545_00980	58.5	0.0000000229	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1400020_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1400020_39	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1400020_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1400020_40	K07729	65.4	8.9e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1400020_40	phrog_8	45.2	0.000000000017	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1400020_40	608538.HTH_1322	61.6	0.000000000219	PBP superfamily domain	N/A
Pfam	UHGV-1400020_40	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1400020_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1400020_40	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1400020_42	K14059	142.9	3.09995e-41	int; integrase	N/A
PHROG	UHGV-1400020_42	phrog_1	158.6	0	integrase	integration and excision
eggNOG-mapper	UHGV-1400020_42	693746.OBV_43340	398.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1400020_42	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1400020_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1400020_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1400020_42	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1400020	Yes	38,048	60	92	1
UHGV-1973800	No	37,001	60	89	1
UHGV-1410692	No	25,237	61	61	1
UHGV-1751369	No	20,374	61	49	1
UHGV-0128505	No	16,684	62	40	1